top page

Tutorials are available here.

Target CDS Information

Gene Symbol (Gene ID) Lman2l (ENSMUSG00000001143)
Cross Reference
EMBL AC084391, AC132456
GO GO:0003674, GO:0005789, GO:0005794, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name Lman2l-003
OTTP OTTMUSP00000062560
OTTT OTTMUST00000051149
UCSC uc007aqd.1
UniParc UPI000268B57A
Uniprot/SPTREMBL J3QNZ7
Vega_transcript Lman2l-003, OTTMUST00000051149
Vega_translation 178969, OTTMUSP00000062560
Definition protein_id:ENSMUSP00000137028
translation:
MAAASRPSWWQRWRRRAWARDGAKLLLFLLLLGSGPGPRHVRAGQAVEYLKREHSLSKPY
QGVGTSSSSLWNLMGNAMVMTQYIRLTPDMQSKQGALWNRVPCFLKDWELQVHFKIHGQG
KKNLHGDGLAIWYTKDRMQPAGIPLHLSHGEQRLPQL

Chromosome 1
Length
Position(start - end)
16,823
36,428,409 - 36,445,233
Orient to Chromosome minus
Link Location : (1:36428409-36445233)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Lman2l (ENSMUSG00000001143)
Transcript ID ENSMUST00000001171
Reports
substitution
cSNPs3
Insertion10
Deletion23
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num1
non-synonymous num2
synonymous substitutions 36443551 (p.Thr81Thr),
non-synonymous substitutions 36428426 (p.Arg153Trp), 36445187 (p.Arg16His),
B6 transcript
(ENSMUST00000001171)
MAAASRPSWWQRWRRRAWARDGAKLLLFLLLLGSGPGPRHVRAGQAVEYLKREHSLSKPY
QGVGTSSSSLWNLMGNAMVMTQYIRLTPDMQSKQGALWNRVPCFLKDWELQVHFKIHGQG
KKNLHGDGLAIWYTKDRMQPAGIPLHLSHGEQRLPQL*
MSMv4 transcript
MAAASRPSWWQRWRRHAWARDGAKLLLFLLLLGSGPGPRHVRAGQAVEYLKREHSLSKPY
QGVGTSSSSLWNLMGNAMVMTQYIRLTPDMQSKQGALWNRVPCFLKDWELQVHFKIHGQG
KKNLHGDGLAIWYTKDRMQPAGIPLHLSHGEQWLPQL*
homology98.73 (158 / 158)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Lman2l (ENSMUSG00000001143)
Transcript ID ENSMUST00000001171
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........CCTCAACTAAGTAACTTAAAACCCACCTACCTCTAATCCCTCCCTCCGGT
AATTGGCTGTAGTCAATTCTATTTAACCAATCATTTTAAATCAAGGAACAAGGTTTGCAC
AATAAAAGCATGTAACCCTGAAAATTCACACAGAATTTAGCATACACTTAATTTCTATAA
ATATCATCATGTGATGTTGGTTGATTGTGCTCGTCAACCCAGCATGTAACCCAGGCTGCC
CTTTACACATTTTACAGTTTGCCAGATGTTTGTTTCTTTGGTTTGGTTTGCCTGTTTGAG
ACAGTTTGCCAGATGTTTGTTTCTTTGGTTTGGTTTGCCTGTTTGAGACAAGGTTTCTCT
GTGTAGCCTTGGCTATTCTAGAACTTGCTCTGTAGACCAGGCTTGCCTCAAACTCAGAGA
TCCAAATACCGTTGCCTCCAAGCATTGGGATACAATCCGTGCACCACCACCACCCTGGAA
CCAGTCGTTTCATTCTAATGAATTACTTAGGTCACTCCCTAACTCACTGTGTTGACTTTG
AACTCCTCACCTTCCTGCCTCAGTCTCCAGAGTGCTGGGATGACCTAATGCCTTCCCACA
TCGTAAGTCAAGTTCTTTACCAACACAGCTAGTCTTCAGTTCCTTCCACTCATTTTAGTC
ACGGATTTGTCTATTTTTCTTTTTACTTCTATGCCCTCTTGGCTGTTAGCTTGGCGGCCA
GGTAGGTACAAATGGCAGTGACAATCGGGAAAAAAAAATGTTTTATCGCTTTAAATTTAC
TATAGAATGCAGAAACAAACTAAGAATCTCTATTACTAGCAGGCCTGGTGAAGCCTGGGA
CAAAAGCAGAGAAGGGAGTCTGGACATTCGGCAACGCCCCTTGCCTGGGTTGGCAAGGCA
ACTGCTACTAGTCAGCCAATCGGTGGGATACTCACCTGCGGGGGAGGGAACTCTCCAGGA
GCCAATGGGAGATCGGGCCGATGGTTCCGCAGGCCAATGGGTTGGGCCAC
1 EXON 1 36,445,050 36,445,271 - 1 222
GGGGCGGGCTTTTTGATGAAGGGCCGGCGGTGGGAAAGATGGCGGCGGCTTCGAGACCCT
CCTGGTGGCAGCGGTGGCGGCGGCACGCGTGGGCTCGGGACGGGGCCAAGCTTTTGCTCT
TTCTCCTTCTGTTGGGGTCTGGGCCGGGGCCGCGGCATGTCAGGGCGGGTCAAGCGGTGG
AGTACTTGAAACGGGAGCACTCGCTGTCGAAGCCCTACCAGG
INTRON 1 - 2 36,443,610 36,445,049 1,440
GTGAGGCGCCCGGGGCGAGGTGGTC..........TGGGCTGATTCTCCCCTCCCCATAG
2 EXON 2 36,443,491 36,443,609 1 0 119
GTGTGGGAACAAGCAGTTCTTCGCTATGGAACCTGATGGGCAACGCCATGGTGATGACGC
AGTACATCCGCCTCACTCCAGATATGCAAAGTAAACAGGGTGCCTTGTGGAACCGGGTG
INTRON 2 - 3 36,439,727 36,443,490 3,764
GTAAGAGGCTTCCTGTGTTAGGACC..........TATGCCGTTGTCTTCCTCACCTTAG
3 EXON 3 36,439,609 36,439,726 0 1 118
CCATGTTTCCTGAAAGACTGGGAACTGCAGGTGCACTTCAAGATTCACGGCCAAGGGAAG
AAGAATCTGCACGGAGACGGCTTGGCAATCTGGTACACAAAGGACCGAATGCAGCCAG
INTRON 3 - 4 36,428,462 36,439,608 11,147
GTATTAGGGATCCTGGGTTGCTTCT..........CTGTTTTTCCCTCCCTGTGTTCCAG
4 EXON 4 36,428,300 36,428,461 1 - 162
CGGGTATTCCCCTACATCTCAGCCATGGTGAACAATGGCTCCCTCAGCTATGATCACGAG
CGGGATGGGCGGCCTACAGAGCTGGGTGGCTGCACAGCCATTGTCCGAAATATCCGTTAT
GACACCTTCCTCGTGATTCGCTATGTCAAGAGGCATCTGACG
INTRON 4 - 5 36,428,217 36,428,299 83
GTGAGTCCTGTCTTAGAGCAGCTGG..........TTTGATACTCTTTGTCTTATTCCAG
5 EXON 5 36,428,102 36,428,216 - - 115
ATAATGATGGATATTGATGGCAAACATGAGTGGAGGGACTGCATTGAAATGCCCGGGGTC
CGGCTCCCCCGGGGCTATTACTTCGGCACTTCCTCCATTACTGGGGATCTCTCTG
INTRON 5 - 6 36,424,958 36,428,101 3,144
GTACTGTACTGCTCCTTCTCTCTGT..........TAATCCTCCGTTCTCCCTCATTTAG
6 EXON 6 36,424,838 36,424,957 - - 120
ATAACCATGATGTCATTTCCCTCAAGTTGTTTGAGCTGACTGGAGTGAGGACCCCAGAAG
AAGAAAAGCTACATCGAGATGTATTCCTGCCCTCGGTGGACAATCTGAAGCTGCCAGAGA
INTRON 6 - 7 36,424,504 36,424,837 334
GTGAGTGTGGGATTCTGAGAAATGG..........CCTCACTGTTGTTTTACTTCCTCAG
7 EXON 7 36,423,186 36,424,503 - - 1,318
TGACAGTGCCACCAACGCCCCTGAGTGGCCTGGCTCTCTTCCTTATTGTCTTCTTCTCCT
TGGTGTTTTCCGTATTTGCCATTGTCATCGGGATCATACTCTACAACAAATGGCAAGACC
AGAGCCGGAAACGCTTCTACTGAGCCCGCTGCCATCAGTCCCTCTACGGTGTTTACCATA
AGGTGTGGGTCTGAGCATACAGCCTAGCGAGTCGGCCCATTGTTCAGGGACTGTGTTCTG
TCACTGGAGATTTGAATGCTAGGAGCCTGCATCCTCATGGTCATCCACGGGAACATCTCA
CTGGCCCAGGATACCACCACAGAGCCGAGCAGCTGTGGCATGCCTTTCCCTGGAGTCCTT
CCATTTCCGAGTACAGAGACATGGAGAAATACCTGCTGTGATGCCTAAATTACACAATTG
GGCAGATAGCCCAAGTGTGGACTGGACACAGTAGGCCTTCCATTGCATTTTAGAATTCCC
AAATAGGAAACCAGAACCGGTACACTCTGAAGACCCACTTACTGGTCTTTGCTTTGCCCA
TGCCTCTTTCTACTTCAGGAGCTCCTTGGCAATCTGGATGGAGACTTCTCCCTCACCCGC
CTGTCTCCCTCCACTCACCGTCCTCTTTATATGCATCCTTAGCTAGGAAAGAAGTTTGCC
GCTCTCATTAGCTGGACCTGGGGCTTCCTGCAGCCTCTCATTGCTTCAGCCTCTTCTCTG
CTGGGTGGATCCTGTTTCTGACTGTGGCTGTGTCTTCTGCTTTCCTCATCAAAGGAAACC
TTCAGGCCTTTGGATGGTTTGGCTAAAAGTTGTTACAACTCAAGAGAAGCTCGGAGGAGT
TGACAGATGCTGTGAGGTTAACTCTGGAATCATCCAGGTCCAGGTGTGCCTCAGAGAGCA
GTGTTGGCTGCGTCTGGACCTGCTGGAGCCTGCTTAGTCGCATGTGTTGTGTTTGTCCTG
ATTCTGCTCTGAGTGTTGGAAGTGATAAGCAGCTTTCTTCTTACTCCCTGGACTTGGACA
TGGCCCCAAGATGCTTGGCCTCTTACTAAGAAGAAACAGTTGGTAATCTGTTACACATCT
CTGAGAGTGAAAGCCCTTCATCCTCTGTGCCTGGAAAAGTTGTGGTCCTGGAGCAGCAGC
ACAGCTTGAGTGCCCTTGTGTGTCACCTATTACACTGCCTTATTCCACAAGGGCCACATG
CTGCTCACCTATCTTCTCTGTGGTTAAATTGGTCACAGGCTAGTCTCCCTGGAGGGCCTG
GCACAGTTCTCTGTAGCCCGAGGAAAAGGCTTCATAAAGTAGCTGATGGAACCACTCA
3' upstream sequence
TGAGTTCTGGCTCAGTGGCCTTCTTGTAGTGTGGGCTTGGTTGGGGGCTCCAGCCTTTTT
CCTGAGCCTCAGGTGTGTCTGCTGTCATCCTGCCCCTCCTGGATGGTTGGGAAAACCCTC
ACCCATCCCTTACCCCATCCGTCCATAGACGAGGAGGAAGGTCACCCTAGCTGCAGGTGA
GAGTTCATCTCAGCCCCCTGTCTATGGGAGTCTGTGTTGTCCTTACGCAGGAGAAAAAAA
GATGGGGTGCAGGAAGCCTTACACCTTCCCTCAGTAGCATAACAGCTTAAGGGGAACCAG
GGAACAAGCTGGAATATAGGTTGGCTCTAGTATTAGGAGTGCTGAAAAGTAATCGTAGTT
TTGTCTGCTTTGAGTTTATCTCAAAGGTAGATTGAGTGGGTCCCATGGTAGAGGATCTAA
GTGGTCTGTTGAGATGACTCTCACTGCCACGGGACTGAAAGGATTTGCCCACAGGAAGAG
TGAGAGAGTGAGTCAGGTTAGCCTAACTCCTGCTCATGAGCACCTTGATGCTTTGAAAGA
GACCAGAAGAGAGGCTCTGCAGTCCTCATGTAGCCTGGGAACTAGTCTTTTCCCTTTTGA
AAAATGTGTATAAGAAAGCCACCCATGCACACACCTTTAATCCCAGCACTCAGAGGCAAA
GGCCAGTGGGTCTCTGAGTTCAAGGCCAGCCTGGTCTATGGAGCAAGTTCCAGGACAGAC
AGAACTATACAGAGAAACCCTATCTTGAAAAATTGAAAACAAAAAACCAAGCCAATTAAA
AACAAACCCTACCCATCCAGCATCCTGCATCCTGCCCCAGCTCTGGTTTTATTATTGTTG
CAGAAGCAAATGTTTTCCATGCTGAGTAAGGCTGGAGGTGGTGCCTGTCCTGGTGCGGCT
CTTGTGCCCTCACACTTGAGTGGAAGCTGTGGCCTCGATGTATGGCACACGGTTACCCTT
CCCCTGCCGAGGACTAAATAGGGTGATTAAATGTGGCATC..........

Sequence Detail Report

Gene Symbol (Gene ID) Lman2l (ENSMUSG00000001143)
Transcript ID ENSMUST00000001171
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 158 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information