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Target CDS Information

Gene Symbol (Gene ID) Ncoa2 (ENSMUSG00000005886)
Cross Reference
CCDS CCDS35515.1
EMBL AC091248, AC121538, AF000582, ...show all
GO GO:0000122, GO:0000978, GO:0001162, ...show all
goslim_goa GO:0000988, GO:0003674, GO:0003677, ...show all
MGI_trans_name Ncoa2-002
OTTP OTTMUSP00000024153
OTTT OTTMUST00000051367
PDB 1L2I, 1OSV, 1WM0, ...show all
protein_id AAB61575.1, AAC53151.1
Reactome R-MMU-1266738, R-MMU-1430728, R-MMU-159418, ...show all
RefSeq_mRNA NM_008678.3
RefSeq_mRNA_predicted XM_006495465, XM_006495466, XM_006495467, ...show all
RefSeq_peptide NP_032704
RefSeq_peptide_predicted XP_006495528.1, XP_011236653.1, XP_011236655.1, ...show all
UCSC uc007aim.2
UniParc UPI00001C20C2
Uniprot/SWISSPROT Q61026
Vega_transcript Ncoa2-002, OTTMUST00000051367
Vega_translation 178733, OTTMUSP00000024153
Definition protein_id:ENSMUSP00000006037
translation:
MSGMGENTSDPSRAETRKRKECPDQLGPSPKRSTEKRNREQENKYIEELAELIFANFNDI
DNFNFKPDKCAILKETVKQIRQIKEQEKAAAANIDEVQKSDVSSTGQGVIDKDALGPMML
EALDGFFFVVNLEGSVVFVSENVTQYLRYNQEELMNKSVYSILHVGDHTEFVKNLLPKSM
VNGGSWSGEPPRRSSHTFNCRMLVKPLPDSEEEGHDSQEAHQKYEAMQCFAVSQPKSIKE
EGEDLQSCLICVARRVPMKERPTLPSSESFTTRQDLQGKITSLDTSTMRAAMKPGWEDLV
RRCIQKFHTQHEGESLSYAKRHHHEVLRQGLAFSQIYRFSLSDGTLVAAQTKSKLIRSQT
TNEPQLVISLHMLHREQNVCVMNPDLTGQAMGKPLNPISSSSPAHQALCSGNPGQDMTLG
SNINFPMNGPKEQMGMPMGRFGGSGGMNHVSGMQATTPQGSNYALKMNSPSQSSPGMNPG
QASSVLSPRQRMSPGVAGSPRIPPSQFSPAGSLHSPVGVCSSTGNSHSYTNSSLNALQAL
SEGHGVSLGSSLASPDLKMGNLQNSPVNMNPPPLSKMGSLDSKDCFGLYGEPSEGTTGQA
EASCHPEEQKGPNDSSMPQAASGDRAEGHSRLHDSKGQTKLLQLLTTKSDQMEPSPLPSS
LSDTNKDSTGSLPGPGSTHGTSLKEKHKILHRLLQDSSSPVDLAKLTAEATGKELSQESS
STAPGSEVTVKQEPASPKKKENALLRYLLDKDDTKDIGLPEITPKLERLDSKTDPASNTK
LIAMKTVKEEVSFEPSDQPGSELDNLEEILDDLQNSQLPQLFPDTRPGAPTGSVDKQAII
NDLMQLTADSSPVPPAGAQKAALRMSQSTFNNPRPGQLGRLLPNQNLPLDITLQSPTGAG
PFPPIRNSSPYSVIPQPGMMGNQGMLGSQGNLGNNSTGMIGSSTSRPSMPSGEWAPQSPA
VRVTCAATTGAMNRPVQGGMIRNPTASIPMRANSQPGQRQMLQSQVMNIGPSELEMNMGG
PQYNQQQAPPNQTAPWPESILPIDQASFASQNRQPFGSSPDDLLCPHPAAESPSDEGALL
DQLYLALRNFDGLEEIDRALGIPELVSQSQAVDAEQFSSQESSIMLEQKPPVFPQQYASQ
AQMAQGGYNPMQDPNFHTMGQRPNYTTLRMQPRPGLRPTGIVQNQPNQLRLQLQHRLQAQ
QNRQPLMNQISSVSNVNLTLRPGVPTQAPINAQMLAQRQREILNQHLRQRQMQQQVQQRT
LMMRGQGLNVTPSMVAPAGLPAAMSNPRIPQANAQQFPFPPNYGISQQPDPGFTGATTPQ
SPLMSPRMAHTQSPMMQQSQANPAYQPTSDMNGWAQGSMGGNSMFSQQSPPHFGQQANTS
MYSNNMNISVSMATNTGGLSSMNQMTGQMSMTSVTSVPTSGLPSMGPEQVNDPALRGGNL
FPNQLPGMDMIKQEGDASRKYC

Chromosome 1
Length
Position(start - end)
81,932
13,142,761 - 13,224,694
Orient to Chromosome minus
Link Location : (1:13142761-13224694)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Ncoa2 (ENSMUSG00000005886)
Transcript ID ENSMUST00000006037
Reports
substitution
cSNPs10
Insertion133
Deletion165
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num10
non-synonymous num0
synonymous substitutions 13149068 (p.Thr1317Thr), 13150819 (p.Leu1261Leu), 13150862 (p.His1246His), 13152454 (p.Asn1202Asn), 13162179 (p.Arg974Arg), 13174469 (p.Ser668Ser), 13180557 (p.Val300Val), 13184221 (p.Gln228Gln), 13184353 (p.Gly184Gly), 13186905 (p.Leu123Leu),
non-synonymous substitutions
B6 transcript
(ENSMUST00000006037)
MSGMGENTSDPSRAETRKRKECPDQLGPSPKRSTEKRNREQENKYIEELAELIFANFNDI
DNFNFKPDKCAILKETVKQIRQIKEQEKAAAANIDEVQKSDVSSTGQGVIDKDALGPMML
EALDGFFFVVNLEGSVVFVSENVTQYLRYNQEELMNKSVYSILHVGDHTEFVKNLLPKSM
VNGGSWSGEPPRRSSHTFNCRMLVKPLPDSEEEGHDSQEAHQKYEAMQCFAVSQPKSIKE
EGEDLQSCLICVARRVPMKERPTLPSSESFTTRQDLQGKITSLDTSTMRAAMKPGWEDLV
RRCIQKFHTQHEGESLSYAKRHHHEVLRQGLAFSQIYRFSLSDGTLVAAQTKSKLIRSQT
TNEPQLVISLHMLHREQNVCVMNPDLTGQAMGKPLNPISSSSPAHQALCSGNPGQDMTLG
SNINFPMNGPKEQMGMPMGRFGGSGGMNHVSGMQATTPQGSNYALKMNSPSQSSPGMNPG
QASSVLSPRQRMSPGVAGSPRIPPSQFSPAGSLHSPVGVCSSTGNSHSYTNSSLNALQAL
SEGHGVSLGSSLASPDLKMGNLQNSPVNMNPPPLSKMGSLDSKDCFGLYGEPSEGTTGQA
EASCHPEEQKGPNDSSMPQAASGDRAEGHSRLHDSKGQTKLLQLLTTKSDQMEPSPLPSS
LSDTNKDSTGSLPGPGSTHGTSLKEKHKILHRLLQDSSSPVDLAKLTAEATGKELSQESS
STAPGSEVTVKQEPASPKKKENALLRYLLDKDDTKDIGLPEITPKLERLDSKTDPASNTK
LIAMKTVKEEVSFEPSDQPGSELDNLEEILDDLQNSQLPQLFPDTRPGAPTGSVDKQAII
NDLMQLTADSSPVPPAGAQKAALRMSQSTFNNPRPGQLGRLLPNQNLPLDITLQSPTGAG
PFPPIRNSSPYSVIPQPGMMGNQGMLGSQGNLGNNSTGMIGSSTSRPSMPSGEWAPQSPA
VRVTCAATTGAMNRPVQGGMIRNPTASIPMRANSQPGQRQMLQSQVMNIGPSELEMNMGG
PQYNQQQAPPNQTAPWPESILPIDQASFASQNRQPFGSSPDDLLCPHPAAESPSDEGALL
DQLYLALRNFDGLEEIDRALGIPELVSQSQAVDAEQFSSQESSIMLEQKPPVFPQQYASQ
AQMAQGGYNPMQDPNFHTMGQRPNYTTLRMQPRPGLRPTGIVQNQPNQLRLQLQHRLQAQ
QNRQPLMNQISSVSNVNLTLRPGVPTQAPINAQMLAQRQREILNQHLRQRQMQQQVQQRT
LMMRGQGLNVTPSMVAPAGLPAAMSNPRIPQANAQQFPFPPNYGISQQPDPGFTGATTPQ
SPLMSPRMAHTQSPMMQQSQANPAYQPTSDMNGWAQGSMGGNSMFSQQSPPHFGQQANTS
MYSNNMNISVSMATNTGGLSSMNQMTGQMSMTSVTSVPTSGLPSMGPEQVNDPALRGGNL
FPNQLPGMDMIKQEGDASRKYC*
MSMv4 transcript
MSGMGENTSDPSRAETRKRKECPDQLGPSPKRSTEKRNREQENKYIEELAELIFANFNDI
DNFNFKPDKCAILKETVKQIRQIKEQEKAAAANIDEVQKSDVSSTGQGVIDKDALGPMML
EALDGFFFVVNLEGSVVFVSENVTQYLRYNQEELMNKSVYSILHVGDHTEFVKNLLPKSM
VNGGSWSGEPPRRSSHTFNCRMLVKPLPDSEEEGHDSQEAHQKYEAMQCFAVSQPKSIKE
EGEDLQSCLICVARRVPMKERPTLPSSESFTTRQDLQGKITSLDTSTMRAAMKPGWEDLV
RRCIQKFHTQHEGESLSYAKRHHHEVLRQGLAFSQIYRFSLSDGTLVAAQTKSKLIRSQT
TNEPQLVISLHMLHREQNVCVMNPDLTGQAMGKPLNPISSSSPAHQALCSGNPGQDMTLG
SNINFPMNGPKEQMGMPMGRFGGSGGMNHVSGMQATTPQGSNYALKMNSPSQSSPGMNPG
QASSVLSPRQRMSPGVAGSPRIPPSQFSPAGSLHSPVGVCSSTGNSHSYTNSSLNALQAL
SEGHGVSLGSSLASPDLKMGNLQNSPVNMNPPPLSKMGSLDSKDCFGLYGEPSEGTTGQA
EASCHPEEQKGPNDSSMPQAASGDRAEGHSRLHDSKGQTKLLQLLTTKSDQMEPSPLPSS
LSDTNKDSTGSLPGPGSTHGTSLKEKHKILHRLLQDSSSPVDLAKLTAEATGKELSQESS
STAPGSEVTVKQEPASPKKKENALLRYLLDKDDTKDIGLPEITPKLERLDSKTDPASNTK
LIAMKTVKEEVSFEPSDQPGSELDNLEEILDDLQNSQLPQLFPDTRPGAPTGSVDKQAII
NDLMQLTADSSPVPPAGAQKAALRMSQSTFNNPRPGQLGRLLPNQNLPLDITLQSPTGAG
PFPPIRNSSPYSVIPQPGMMGNQGMLGSQGNLGNNSTGMIGSSTSRPSMPSGEWAPQSPA
VRVTCAATTGAMNRPVQGGMIRNPTASIPMRANSQPGQRQMLQSQVMNIGPSELEMNMGG
PQYNQQQAPPNQTAPWPESILPIDQASFASQNRQPFGSSPDDLLCPHPAAESPSDEGALL
DQLYLALRNFDGLEEIDRALGIPELVSQSQAVDAEQFSSQESSIMLEQKPPVFPQQYASQ
AQMAQGGYNPMQDPNFHTMGQRPNYTTLRMQPRPGLRPTGIVQNQPNQLRLQLQHRLQAQ
QNRQPLMNQISSVSNVNLTLRPGVPTQAPINAQMLAQRQREILNQHLRQRQMQQQVQQRT
LMMRGQGLNVTPSMVAPAGLPAAMSNPRIPQANAQQFPFPPNYGISQQPDPGFTGATTPQ
SPLMSPRMAHTQSPMMQQSQANPAYQPTSDMNGWAQGSMGGNSMFSQQSPPHFGQQANTS
MYSNNMNISVSMATNTGGLSSMNQMTGQMSMTSVTSVPTSGLPSMGPEQVNDPALRGGNL
FPNQLPGMDMIKQEGDASRKYC*
homology100.00 (1463 / 1463)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Ncoa2 (ENSMUSG00000005886)
Transcript ID ENSMUST00000006037
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GTGTTCCTGTCATATTTTGATAACTTCCGTTAAGCAAACAAATGTTGCTC
ATTTCTTTCAACTAATTATATCTAAATGGAAAAGAAGTTGCTTTTCCAGTTAAAAACCAA
ACAACATTTAAACGTAAAAACTCCTCCACGTCTCCTTAATCCCAATACCCCATTGAGGAT
TTGATAATGGATTCCCCAATTAAAAAACAAAACAAAACTTTTGTTGTCTCACTGCGTGCG
GAGAACACTCCCCTCGGTCTTTCTAAATACTGTGCAGCCTTTGCTTTGTCAAGCAATCCC
GGGGTGGTACCCCGGTAAGTTCGCCTCCCGCGGTCACGCCCCTCTATCCCCTCCAGAGAC
CTCAGGGACAGCAATTGGGGAGGCGTATCCACGAAAAAACCGAGGGGACATGGTGGCCAA
GGAGTGCGCTCCGGAACAGCGTCTGGGTGCAGAGGTGCGCCCGAGGGGTGCAGGCTGCCG
GCTACCGGGCCCTGCCTTAGCGCGCGCGGGAGGCACCTCTGGGACTAGGTTTTCCGCGAC
CTTCTCGCCGCAGCGTCCCTGCCGTCGGAGGCGCGGCAGTCCCGTGGCCTCCACCCCCAG
GCCCGGGCCAGTCCCCCTTTTTAGCTTTCTTTTGGGCATTGCCCTTTGCCCTCGCATGGA
GTCCTCTGTTGACTCTCCCTTCACTTCCAGTCACCCATAGGTCACGGTCCCTAGACCACA
GCCACCCATCTTGTCCAACTCCCCGAGCTCTGAAGTCTCGCCAGCCAGGGAGATGCTGAG
GACCCCGCGGGTGGGGTAGCCCCGGTGTTCCCGGGCCCACGCTCGGGGGCGCGGGACGCA
AGTTTCCGCCCGGTCCCCTGAGCGGTGACAGCGTTCGCTCGGAGGCGGCGGGGAGGCGGA
GGGCGGGCCAGCCCCGTGCCCGAGCCCCCTCCCCTGCTCGCGAGCTCGCGCGGTCTGTGT
CTCTCTCCGCAAGTGCAGAGCCGCGGAGGAGGAGGGGGAGGAGGAGGAGG
1 EXON 1 13,373,938 13,374,083 - - 146
GAGCTGGGGGAGGATCTCCATTGAAATAAACAACCAGGCAGCAGTTATTAACACGGGAAC
ATGGCGGCCGCAGCCTGGGCTCCCGCGGCGGCGGCGGAGGTCAGCGCCGACGGCAGCCCG
CACCTGACGGCGTGACGGCCACATTG
INTRON 1 - 2 13,286,026 13,373,937 87,912
GTAAGCGCGCCTCCCCTGGGGGCTC..........CGTCTGGGTTTTGTTCCCATTGCAG
2 EXON 2 13,285,969 13,286,025 - - 57
ATTTTCCTCGCATCTGGCTTCACTGCATTGGCTCTTCTGCACTGTGTATAGGCACAG
INTRON 2 - 3 13,224,714 13,285,968 61,255
GTGAGTTAATCCTTGGGTCTTTCAT..........CCTTTTCCCATGTGTTCTGTTTTAG
3 EXON 3 13,224,609 13,224,713 - 2 105
TTGCTGATATGTGTTCAAGATGAGTGGGATGGGAGAAAACACCTCTGACCCGTCCAGGGC
AGAGACCAGAAAACGCAAGGAATGTCCCGACCAGCTCGGACCCAG
INTRON 3 - 4 13,221,480 13,224,608 3,129
GTGAGCCGATCGTCAACCAAAGAAA..........ATAGTAATGTCCCGTTCCTTCTTAG
4 EXON 4 13,221,307 13,221,479 2 1 173
CCCCAAAAGGAGCACTGAGAAACGGAACCGCGAGCAGGAGAATAAGTACATAGAGGAGCT
GGCCGAGCTGATCTTCGCAAACTTTAATGATATTGACAACTTCAACTTCAAACCTGACAA
ATGTGCCATCCTAAAAGAAACTGTGAAGCAGATCCGCCAGATCAAAGAGCAAG
INTRON 4 - 5 13,190,191 13,221,306 31,116
GTAAGAGGACGGGAGGGGTTCTGCG..........AATTTGCTCTTGTGTTTTGTTGCAG
5 EXON 5 13,190,087 13,190,190 1 0 104
AGAAAGCAGCAGCTGCCAACATAGATGAAGTGCAGAAGTCAGATGTGTCGTCCACGGGGC
AGGGTGTCATCGACAAGGATGCACTGGGGCCCATGATGCTTGAG
INTRON 5 - 6 13,186,911 13,190,086 3,176
GTAACCACAGCCTTACCTGGTTTTG..........GTTTTTATGTTGTTGCACCCTGTAG
6 EXON 6 13,186,733 13,186,910 0 1 178
GCCCTTGATGGGTTCTTCTTCGTTGTGAACCTGGAAGGCAGTGTGGTGTTCGTGTCAGAG
AATGTGACACAGTATCTACGGTATAACCAAGAAGAGCTGATGAACAAGAGTGTCTACAGC
ATCCTGCATGTCGGGGACCACACTGAATTTGTCAAGAACCTGCTGCCAAAGTCCATGG
INTRON 6 - 7 13,184,364 13,186,732 2,369
GTAAATGTCAGTGGATCCCGCTGCC..........CAGGTGTCTCTTTCCCCCCTCGCAG
7 EXON 7 13,184,175 13,184,363 1 1 189
TGAATGGAGGCTCCTGGTCTGGAGAACCTCCCAGGCGGAGCAGCCATACCTTCAACTGTC
GCATGCTGGTGAAGCCTTTGCCAGATTCAGAAGAGGAAGGCCATGATAGCCAGGAAGCCC
ATCAGAAATACGAGGCGATGCAATGCTTCGCTGTGTCTCAGCCCAAGTCCATCAAAGAGG
AAGGCGAAG
INTRON 7 - 8 13,181,318 13,184,174 2,857
GTAGGACGACCCTGGGAGAGAGAGG..........TGATAAACAATTGTGTCCTCTTAAG
8 EXON 8 13,181,216 13,181,317 1 1 102
ATTTGCAGTCCTGCTTGATTTGTGTGGCACGAAGAGTCCCCATGAAGGAAAGACCAACTC
TTCCCTCATCAGAAAGCTTTACCACCCGCCAGGACCTCCAAG
INTRON 8 - 9 13,180,625 13,181,215 591
GTAAATTCCTGTCAGGGAAGACAAA..........TGTAATGTCTGCTGTTATCTTTCAG
9 EXON 9 13,180,481 13,180,624 1 1 144
GCAAGATCACTTCACTGGACACTAGCACCATGAGAGCCGCCATGAAGCCGGGCTGGGAAG
ATCTGGTGAGAAGATGCATTCAGAAGTTCCACACACAGCATGAAGGGGAGTCTCTATCAT
ATGCCAAGAGGCATCACCATGAAG
INTRON 9 - 10 13,177,222 13,180,480 3,259
GTAGGCCTCTCTGCATACTACTCTA..........GCTTTGTTTCCTTTTTTGCCTGCAG
10 EXON 10 13,177,074 13,177,221 1 2 148
TTCTGAGACAAGGGTTGGCGTTCAGTCAGATCTATCGTTTTTCTTTGTCTGATGGCACTC
TCGTTGCTGCACAAACCAAGAGCAAACTCATCCGTTCTCAGACTACTAATGAGCCTCAGC
TTGTAATATCTTTACACATGCTTCACAG
INTRON 10 - 11 13,175,349 13,177,073 1,725
GTAATCATAAACTCAGCCTCGGTTT..........ATATGTTTCTTTCCTCATTGTACAG
11 EXON 11 13,174,079 13,175,348 2 0 1,270
AGAGCAGAATGTATGTGTAATGAATCCGGATCTGACTGGACAAGCGATGGGGAAGCCATT
GAATCCAATTAGCTCTAGCAGCCCTGCCCACCAGGCCCTGTGCAGTGGGAACCCAGGTCA
GGACATGACCCTCGGTAGCAATATAAATTTTCCCATGAATGGCCCAAAGGAACAAATGGG
CATGCCTATGGGCAGGTTTGGTGGTTCTGGGGGCATGAACCATGTGTCAGGCATGCAAGC
AACCACTCCTCAGGGTAGTAACTATGCACTCAAAATGAACAGTCCCTCGCAAAGCAGCCC
CGGCATGAACCCGGGGCAAGCCAGCTCCGTGCTCTCCCCAAGGCAGCGCATGAGCCCCGG
CGTGGCTGGCAGTCCTCGCATCCCACCCAGTCAGTTTTCCCCTGCAGGAAGCTTGCATTC
CCCTGTGGGAGTTTGCAGCAGCACAGGAAATAGCCATAGTTATACCAACAGTTCCCTCAA
TGCACTGCAAGCCCTCAGCGAGGGCCATGGGGTCTCACTCGGGTCCTCGCTGGCTTCACC
GGACCTAAAAATGGGCAATTTGCAAAACTCCCCAGTTAATATGAATCCTCCCCCACTCAG
CAAGATGGGAAGCTTGGACTCCAAAGACTGTTTTGGACTTTATGGGGAGCCCTCAGAAGG
TACAACTGGACAAGCAGAGGCCAGCTGCCATCCTGAAGAACAAAAGGGGCCCAATGATTC
CAGCATGCCCCAGGCGGCCAGCGGGGACAGGGCTGAGGGACACAGCCGGCTGCATGACAG
CAAAGGGCAGACCAAACTCCTGCAGCTGCTGACCACCAAGTCCGACCAGATGGAGCCTTC
ACCCTTGCCCAGCTCCTTGTCGGACACAAACAAGGACTCGACAGGGAGCTTGCCTGGGCC
TGGGTCCACGCATGGCACCTCGCTCAAGGAGAAGCATAAGATTTTGCACAGACTCTTACA
GGACAGCAGTTCCCCTGTGGACTTGGCCAAGCTGACAGCAGAAGCCACAGGCAAAGAGCT
GAGCCAGGAGTCCAGCAGCACAGCTCCTGGGTCGGAAGTGACTGTCAAACAGGAGCCAGC
GAGCCCCAAGAAGAAAGAGAATGCACTACTGCGCTATTTGCTCGACAAAGATGATACTAA
AGATATTGGTTTACCGGAAATAACCCCCAAACTCGAGCGACTGGACAGTAAGACAGATCC
TGCCAGTAACACAAAGTTAATTGCTATGAAAACTGTGAAGGAGGAGGTGAGCTTTGAGCC
CAGTGACCAG
INTRON 11 - 12 13,167,107 13,174,078 6,972
GTGAGTTTTCTAATGTCTTCTCCCA..........GTACACTTCTGTTTGTTAACTGCAG
12 EXON 12 13,166,896 13,167,106 0 1 211
CCTGGCAGCGAGCTGGACAACTTGGAAGAGATTTTGGATGATTTGCAGAACAGTCAGTTA
CCACAGCTTTTCCCAGACACAAGGCCAGGAGCTCCTACTGGGTCAGTTGACAAGCAAGCC
ATCATCAATGACCTCATGCAACTCACAGCTGACAGCAGTCCCGTCCCACCTGCCGGAGCC
CAGAAGGCAGCACTGCGCATGTCACAGAGCA
INTRON 12 - 13 13,165,103 13,166,895 1,793
GTAAGTATGCGCTCTAACCCCATCA..........AATTTTTCATTTGTTCTTTCCTTAG
13 EXON 13 13,164,896 13,165,102 1 1 207
CTTTTAATAACCCACGACCAGGGCAACTGGGCAGGTTATTGCCAAACCAGAACTTACCAC
TTGACATCACTTTGCAAAGCCCAACTGGTGCTGGACCTTTCCCACCAATCAGAAACAGTA
GCCCCTACTCAGTGATACCTCAGCCAGGAATGATGGGTAACCAAGGGATGCTAGGAAGCC
AAGGAAACTTAGGGAACAATAGCACAG
INTRON 13 - 14 13,162,289 13,164,895 2,607
GTAAGGGCTCAGCGGTACTGCTGCT..........TCAGTTTCCTCTGTCTTGGATGCAG
14 EXON 14 13,162,073 13,162,288 1 1 216
GAATGATTGGCAGCAGCACTTCCCGGCCCAGCATGCCTTCTGGGGAATGGGCACCACAGA
GTCCAGCTGTGAGAGTCACTTGTGCTGCTACCACTGGTGCCATGAACCGGCCAGTCCAAG
GAGGCATGATTCGGAACCCAACAGCCAGCATCCCCATGCGAGCCAACAGCCAGCCTGGCC
AAAGACAGATGCTTCAGTCTCAGGTCATGAACATAG
INTRON 14 - 15 13,160,291 13,162,072 1,782
GTAAGGCTCCTTCCCTGCTGCCCTT..........TCTTTTTTTTTCCTCCCTCTTTCAG
15 EXON 15 13,160,161 13,160,290 1 2 130
GCCCTTCTGAGTTAGAGATGAACATGGGAGGACCTCAGTATAATCAACAGCAGGCCCCTC
CGAACCAAACTGCCCCGTGGCCTGAGAGCATCCTGCCTATAGACCAGGCATCGTTTGCCA
GCCAGAACAG
INTRON 15 - 16 13,156,536 13,160,160 3,625
GTAAGTCCAGGCCCCCGGAGAGCTA..........CATGGTGAAGTTTGTCTCTTTACAG
16 EXON 16 13,156,370 13,156,535 2 0 166
GCAGCCCTTCGGCAGCTCCCCTGATGACCTGCTGTGTCCACATCCTGCAGCAGAGTCGCC
AAGCGATGAGGGCGCTCTTCTTGACCAGCTGTATCTGGCCTTGCGGAACTTCGATGGCCT
TGAGGAGATTGATAGAGCTCTGGGGATACCAGAACTGGTCAGCCAG
INTRON 16 - 17 13,153,076 13,156,369 3,294
GTAGGCCAGAGCATCAGAGCGGCCA..........GTGCTTATTTGGGGCTTCTTTTCAG
17 EXON 17 13,152,797 13,153,075 0 0 279
AGCCAAGCTGTGGATGCAGAGCAGTTCTCAAGTCAGGAGTCCAGCATAATGCTGGAGCAG
AAGCCCCCCGTTTTCCCACAGCAGTACGCATCTCAGGCACAAATGGCCCAGGGTGGCTAT
AATCCCATGCAAGATCCAAACTTTCACACCATGGGACAGCGGCCAAATTACACCACACTC
CGTATGCAGCCACGGCCAGGCCTCAGGCCCACAGGCATTGTGCAGAACCAGCCAAACCAA
CTGAGACTTCAGCTTCAGCACCGCCTCCAAGCACAGCAG
INTRON 17 - 18 13,152,457 13,152,796 340
GTTAGTTTCTCATGGGACTCAGGTG..........TGCTAATGCCCGTGTTTGTGTGTAG
18 EXON 18 13,152,379 13,152,456 0 0 78
AACCGCCAGCCGCTTATGAATCAGATCAGCAGTGTTTCCAATGTGAACCTGACTCTGAGG
CCTGGAGTGCCCACTCAG
INTRON 18 - 19 13,150,919 13,152,378 1,460
GTGAGAAGCCTCTCATTTTTCCTCC..........CCTTCATGATTGCCCCCAATTTCAG
19 EXON 19 13,150,690 13,150,918 0 1 229
GCTCCTATTAATGCACAGATGCTGGCCCAGAGGCAGAGGGAAATCCTCAACCAACACCTT
CGGCAGAGACAGATGCAGCAGCAGGTGCAGCAGCGGACTCTGATGATGAGAGGACAGGGC
TTGAATGTGACCCCAAGCATGGTGGCTCCCGCTGGCCTACCAGCAGCCATGAGCAATCCC
CGGATCCCCCAGGCCAATGCCCAGCAGTTCCCATTTCCTCCGAACTACG
INTRON 19 - 20 13,149,109 13,150,689 1,581
GTACTGACTTAGATCCCTCCCACCG..........CTTCTGTTTTGTTTTTGTTTTTAAG
20 EXON 20 13,148,931 13,149,108 1 2 178
GAATAAGTCAACAACCTGATCCTGGCTTTACTGGGGCTACGACTCCCCAGAGTCCTCTAA
TGTCTCCCCGGATGGCACATACTCAGAGTCCCATGATGCAGCAGTCTCAAGCCAACCCAG
CCTACCAGCCCACCTCAGACATGAATGGATGGGCACAGGGGAGCATGGGTGGAAACAG
INTRON 20 - 21 13,148,516 13,148,930 415
GTAACATCACATTACTGCGTCTGAT..........ACTAACTCTGTCTCCCACGCTACAG
21 EXON 21 13,148,317 13,148,515 2 0 199
CATGTTCTCACAGCAGTCCCCACCACACTTTGGGCAACAAGCAAACACCAGCATGTATAG
TAACAACATGAACATCAGTGTGTCGATGGCAACCAACACGGGTGGCTTGAGCAGCATGAA
CCAGATGACAGGCCAGATGAGCATGACCTCAGTGACCTCCGTGCCTACGTCAGGACTGCC
CTCCATGGGTCCCGAGCAG
INTRON 21 - 22 13,146,965 13,148,316 1,352
GTAAGAGCCTCAGAGAAGCAGCTCA..........GAAATGTGTCATGTTGTCACCACAG
22 EXON 22 13,146,875 13,146,964 0 0 90
GTCAATGACCCTGCTCTGAGGGGAGGCAACCTTTTCCCAAACCAACTGCCTGGAATGGAC
ATGATCAAGCAGGAGGGAGATGCATCTCGG
INTRON 22 - 23 13,142,773 13,146,874 4,102
GTAAGCAGCAGGAGCCCAGAGTGCA..........AACCTTTCTGTCTGTTTCCCCTCAG
23 EXON 23 13,142,475 13,142,772 0 - 298
AAATACTGCTGACCCTGGAGAAACTGTCTGCATCTTTCTTCAACCCACTGGGCTTACAAA
CATCTACCAGTCTGGAGAGCTGCGTCTCTTTGTGTTGCCACCTGACATGCCGCCAGTTCT
CCCAGGACATAGCAGCAGACAGTCGGGCCCTGGGCCCGCAGCATAGAGCGTGCTGGCTTG
GCTGCCACCGGAAGAGTTGCCTCTCCCGACAGCCTGCAGCTCGCCTCCAGACCAACCCGC
AGTCTGTTCACTGCATTCACCGTAGTGCAACTTAGATCTCCTGCAGAGTAACTGTCCC
3' upstream sequence
CAGGCCGACTTCATCCCCATCAGATTGAATGTATTTAAATGTGTGTGTTTGAGGAGAGCC
ATGCCCTTGGCCTGTTCCTGCTCGGCTCCAGACACTGGTTTCTTGCTTTGTTCTCTGTGG
CTCTTCTGTGTAAAAGATGAGAATCTTATCTAGAGGAAAGAAAGGAACTTTTAACACAGT
ACAACCCAAGGTGTTCTAAGCTTAAAGCCTGCATTTGACTGGGATGGAGACAGGGCAGAC
ACTGTGCACAGTGCTGTGTATGCCGGCACACCTAGTCAGCAACACGTAACCGAGGCAGAG
TTCTGTCTCCAGGAAGGAGTGTCCCGTCACTGAACAGATGGAAGGCTCTTGAGAGAGGCT
GTTAGCATTAACAAGTATCTGTTCCCACTTTTCTCTGTTAAAACCAAACTAGTTTCCCCT
AAATCATGAATCAAAAAGAAATACTTGTTTCTAAATTGTTTTTAGATCAGATAGTTTGAT
TGGCATCTCTTCCCTTCCTCTCCCCACCTTCTCTCGTCCCTCCCTCTTTCATTCCTTTAA
AGTAAAAACATCAACAACAGCATACACCATAGAGACCAGGGAAGCCCTTAGGATCTCTCA
GTGCTGTGCCAGCCACTTACAGCAGCTTCCCAGTGACCATGCATTTCCTATCAGAGAGGA
ACAAAGTCAGGCTGTGACATCTGCTTAGGTAGCCTGGGCTGCCCCATCAGCTCAGGCCTC
CAAAATGAGAGAACTTACTAATGAAATCAACAGCAGACGTCACGACAGATCTAACCTCTG
CCATGTGGGGTTGTTTTTTATTTTTGGTTTTTAGCAGTGCTGACGAAGCCGAAGTTTTGT
AAGGTACATAAAGATCCAATTTATATGTAAACAAGCAATAATTTAAGTTCTGAACTTAAG
TGTTTTAACTGTATAATTTTGTGAGGTATACATATTGTGGGATTGACTCAAAATGAGGTA
CTTCAGTATTAAATTAGATATCTTCATAGCAATGTCTCCT..........

Sequence Detail Report

Gene Symbol (Gene ID) Ncoa2 (ENSMUSG00000005886)
Transcript ID ENSMUST00000006037
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 1463 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information