MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Tfap2a (ENSMUSG00000021359)

Cross Reference

CCDS	CCDS49243.1
EMBL	AC123834, AK053704, CH466546
Fantom	E130211B13
GO	GO:0000122, GO:0000976, GO:0000978, ...show all
goslim_goa	GO:0000988, GO:0001071, GO:0003674, ...show all
MGI_trans_name	Tfap2a-201
protein_id	BAC35484.1, EDL40952.1
RefSeq_mRNA	NM_001122948.2
RefSeq_peptide	NP_001116420
RefSeq_peptide_predicted	XP_006516966.1

UCSC	uc007qee.3
UniParc	UPI00000EB062
Uniprot/SPTREMBL	Q8BPN4

Definition

protein_id:ENSMUSP00000021787
translation:

MLVHSFSAMDRHDGTSNGTARLPQLGTVGQSPYTSAPPLSHTPNADFQPPYFPPPYQPIY
PQSQDPYSHVNDPYSLNPLHAQPQPQHPGWPGQRQSQESGLLHTHRGLPHQLSGLDPRRD
YRRHEDLLHGPHGLGSGLGDLPIHSLPHAIEDVPHVEDPGINIPDQTVIKKGPVSLSKSN
SNAVSAIPINKDNLFGGVVNPNEVFCSVPGRLSLLSSTSKYKVTVAEVQRRLSPPECLNA
SLLGGVLRRAKSKNGGRSLREKLDKIGLNLPAGRRKAANVTLLTSLVEGEAVHLARDFGY
VCETEFPAKAVAEFLNRQHSDPNEQVARKNMLLATKQICKEFTDLLAQDRSPLGNSRPNP
ILEPGIQSCLTHFNLISHGFGSPAVCAAVTALQNYLTEALKAMDKMYLSNNPNSHTDNSA
KSSDKEEKHRK

Chromosome

Length
Position(start - end)

12,949
40,717,115 - 40,730,065

Orient to Chromosome

minus

Link

Location : (13:40717115-40730065)
/

Detail Map

name	Tfap2a (ENSMUSG00000021359)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Tfap2a note : transcription factor AP-2, alpha [Source:MGI Symbol;Acc:MGI:104671]

name	Gm26688 (ENSMUSG00000097752)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Gm26688 note : predicted gene, 26688 [Source:MGI Symbol;Acc:MGI:5477182]

name	Tfap2a (ENSMUSG00000021359)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000110193

name	Tfap2a (ENSMUSG00000021359)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000021787

name	Tfap2a (ENSMUSG00000021359) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS26467.1 RefSeq_peptide:NP_001288603 RefSeq_peptide:NP_035677 RefSeq_mRNA:NM_001301674.1 RefSeq_mRNA:NM_011547.4 RefSeq_peptide_predicted:XP_006516963.1 RefSeq_peptide_predicted:XP_006516965.1 UCSC:uc007qej.3 GO:GO:0000122 GO:GO:0000976 GO:GO:0000978 GO:GO:0000979 GO:GO:0000981 GO:GO:0000982 GO:GO:0000987 GO:GO:0001077 GO:GO:0001078 GO:GO:0001822 GO:GO:0003713 GO:GO:0005515 GO:GO:0005634 GO:GO:0005634 GO:GO:0005654 GO:GO:0005737 GO:GO:0005794 GO:GO:0005813 GO:GO:0005829 GO:GO:0006366 GO:GO:0007605 GO:GO:0008134 GO:GO:0008285 GO:GO:0009414 GO:GO:0010033 GO:GO:0010842 GO:GO:0010944 GO:GO:0014044 GO:GO:0030501 GO:GO:0032496 GO:GO:0042472 GO:GO:0043066 GO:GO:0043231 GO:GO:0043525 GO:GO:0043565 GO:GO:0043565 GO:GO:0044212 GO:GO:0045595 GO:GO:0045892 GO:GO:0045944 GO:GO:0045944 GO:GO:0046983 GO:GO:0060021 GO:GO:0070172 GO:GO:0071281 GO:GO:2000378 MGI_trans_name:Tfap2a-202 UniParc:UPI0000021BA7
definition	note : transcript_id=ENSMUST00000110193 protein_id : ENSMUSP00000105822 translation : MLWKLTDNIKYEDCEDRHDGTSNGTARLPQLGTVGQSPYTSAPPLSHTPNADFQPPYFPPPYQPIYPQSQDPYSHVNDPYSLNPLHAQPQPQHPGWPGQRQSQESGLLHTHRGLPHQLSGLDPRRDYRRHEDLLHGPHGLGSGLGDLPIHSLPHAIEDVPHVEDPGINIPDQTVIKKGPVSLSKSNSNAVSAIPINKDNLFGGVVNPNEVFCSVPGRLSLLSSTSKYKVTVAEVQRRLSPPECLNASLLGGVLRRAKSKNGGRSLREKLDKIGLNLPAGRRKAANVTLLTSLVEGEAVHLARDFGYVCETEFPAKAVAEFLNRQHSDPNEQVARKNMLLATKQICKEFTDLLAQDRSPLGNSRPNPILEPGIQSCLTHFNLISHGFGSPAVCAAVTALQNYLTEALKAMDKMYLSNNPNSHTDNSAKSSDKEEKHRK

name	Tfap2a (ENSMUSG00000021359) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS49243.1 RefSeq_peptide:NP_001116420 RefSeq_mRNA:NM_001122948.2 RefSeq_peptide_predicted:XP_006516966.1 Uniprot/SPTREMBL:Q8BPN4 UCSC:uc007qee.3 Fantom:E130211B13 EMBL:AC123834 EMBL:AK053704 EMBL:CH466546 GO:GO:0000122 GO:GO:0000976 GO:GO:0000978 GO:GO:0000979 GO:GO:0000980 GO:GO:0000981 GO:GO:0000982 GO:GO:0000987 GO:GO:0001077 GO:GO:0001078 GO:GO:0001822 GO:GO:0001843 GO:GO:0002089 GO:GO:0003151 GO:GO:0003334 GO:GO:0003682 GO:GO:0003700 GO:GO:0003713 GO:GO:0005515 GO:GO:0005634 GO:GO:0005654 GO:GO:0005667 GO:GO:0005737 GO:GO:0005794 GO:GO:0005813 GO:GO:0006355 GO:GO:0006357 GO:GO:0006366 GO:GO:0007605 GO:GO:0008285 GO:GO:0009880 GO:GO:0010172 GO:GO:0010944 GO:GO:0014032 GO:GO:0021506 GO:GO:0021884 GO:GO:0030335 GO:GO:0030501 GO:GO:0035136 GO:GO:0042059 GO:GO:0042472 GO:GO:0043066 GO:GO:0043231 GO:GO:0043524 GO:GO:0043525 GO:GO:0043565 GO:GO:0043588 GO:GO:0044212 GO:GO:0045595 GO:GO:0045664 GO:GO:0045892 GO:GO:0045893 GO:GO:0045944 GO:GO:0046983 GO:GO:0048485 GO:GO:0048596 GO:GO:0048701 GO:GO:0048705 GO:GO:0048730 GO:GO:0060021 GO:GO:0060235 GO:GO:0060325 GO:GO:0061303 GO:GO:0070172 GO:GO:0071281 GO:GO:0071711 GO:GO:2000378 MGI_trans_name:Tfap2a-201 goslim_goa:GO:0000988 goslim_goa:GO:0001071 goslim_goa:GO:0003674 goslim_goa:GO:0003677 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005737 goslim_goa:GO:0005794 goslim_goa:GO:0005815 goslim_goa:GO:0005856 goslim_goa:GO:0007267 goslim_goa:GO:0008150 goslim_goa:GO:0009058 goslim_goa:GO:0009790 goslim_goa:GO:0030154 goslim_goa:GO:0030198 goslim_goa:GO:0034641 goslim_goa:GO:0043226 goslim_goa:GO:0043234 goslim_goa:GO:0048646 goslim_goa:GO:0048856 goslim_goa:GO:0050877 protein_id:BAC35484.1 protein_id:EDL40952.1 UniParc:UPI00000EB062
definition	note : transcript_id=ENSMUST00000021787 protein_id : ENSMUSP00000021787 translation : MLVHSFSAMDRHDGTSNGTARLPQLGTVGQSPYTSAPPLSHTPNADFQPPYFPPPYQPIYPQSQDPYSHVNDPYSLNPLHAQPQPQHPGWPGQRQSQESGLLHTHRGLPHQLSGLDPRRDYRRHEDLLHGPHGLGSGLGDLPIHSLPHAIEDVPHVEDPGINIPDQTVIKKGPVSLSKSNSNAVSAIPINKDNLFGGVVNPNEVFCSVPGRLSLLSSTSKYKVTVAEVQRRLSPPECLNASLLGGVLRRAKSKNGGRSLREKLDKIGLNLPAGRRKAANVTLLTSLVEGEAVHLARDFGYVCETEFPAKAVAEFLNRQHSDPNEQVARKNMLLATKQICKEFTDLLAQDRSPLGNSRPNPILEPGIQSCLTHFNLISHGFGSPAVCAAVTALQNYLTEALKAMDKMYLSNNPNSHTDNSAKSSDKEEKHRK

name
type	misc_feature
link
xref
definition	note : contig AC123834.4 1..115737(-1)

name	Gm26688 (ENSMUSG00000097752)
type	misc_RNA
link	VEGA Ensembl MGI
xref	RefSeq_ncRNA:NR_125899 Vega_transcript:OTTMUST00000121673 Vega_transcript:OTTMUST00000121673 UCSC:uc007qek.1 Clone_based_vega_transcript:RP24-132N9.1-001 MGI_trans_name:Gm26688-001 OTTT:OTTMUST00000121673 RNACentral:URS0000770685
definition	note : antisense note : transcript_id=ENSMUST00000181176

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Tfap2a (ENSMUSG00000021359)
Transcript ID	ENSMUST00000021787

Reports
substitution
cSNPs	5
Insertion	13
Deletion	25
SNPs	+1kb 40730752(c.-687T>A), 40731333(c.-1268C>T), 40731562(c.-1497C>A), 40731681(c.-1616A>G), 40731794(c.-1729A>G), 40731866(c.-1801A>G), 40732125(c.-2060T>A), 40732454(c.-2389G>A), 40733585(c.-3520C>G), 40734144(c.-4079A>T), 40735390(c.-5325A>G), 5'UTR CDS 40723171(c.666G>A), 40723240(c.597A>G), 40728393(c.411G>A), 40728528(c.276T>C), 40728743(c.61C>A), 3'UTR 40715801(c.1314T>G), 40715802(c.1313C>T), 40715861(c.1254G>C), 40715863(c.1252C>T), 40715866(c.1249T>C), 40715867(c.1248T>G), 40716015(c.1100A>G), 40716778(c.337G>C), 40716788(c.327T>A), 40716890(c.225T>C), INTRON 40718002(c.1008-599T>C), 40718165(c.1008-762A>C), 40718227(c.1008-824A>G), 40718261(c.1008-858A>G), 40718411(c.1007+781C>T), 40718763(c.1007+429C>G), 40719481(c.866-148G>A), 40719691(c.866-358T>A), 40719715(c.866-382T>C), 40720242(c.866-909A>G), 40720314(c.865+955T>C), 40720361(c.865+908G>A), 40720443(c.865+826A>C), 40720610(c.865+659C>T), 40721502(c.747-115A>G), 40722192(c.747-805G>A), 40722241(c.746+850T>C), 40722848(c.746+243C>T), 40722983(c.746+108A>T), 40723506(c.515-184C>T), 40723540(c.515-218C>A), 40723694(c.515-372G>T), 40723955(c.515-633C>T), 40724152(c.515-830C>T), 40724414(c.514+715A>C), 40724998(c.514+131C>G), 40725183(c.463-3C>T), 40725384(c.463-204A>G), 40725545(c.463-365G>C), 40726130(c.463-950T>A), 40726700(c.463-1520C>T), 40726984(c.462+1358G>A), 40727052(c.462+1290G>A), 40727156(c.462+1186T>G), 40727455(c.462+887A>G), 40727515(c.462+827G>A), 40727530(c.462+812T>C), 40727894(c.462+448A>G), 40729201(c.28-425A>G), 40729266(c.28-490C>T), 40729417(c.27+622T>A), 40729506(c.27+533T>C), 40729600(c.27+439G>T), 40729809(c.27+230T>C), 40729893(c.27+146A>T), -1kb 40711071(c.6044T>C), 40711096(c.6019T>C), 40711097(c.6018C>T), 40711267(c.5848G>T), 40711393(c.5722A>C), 40711486(c.5629T>C), 40711608(c.5507T>C), 40711827(c.5288A>G), 40712109(c.5006T>C), 40712273(c.4842C>T), 40712510(c.4605C>T), 40712605(c.4510G>A), 40712877(c.4238G>A), 40713763(c.3352T>C), 40713802(c.3313A>T), 40713886(c.3229A>G), 40713910(c.3205G>T), 40714589(c.2526G>A), 40714592(c.2523G>A), 40714595(c.2520G>A), 40714598(c.2517G>A), 40714601(c.2514G>A), 40714681(c.2434C>T), 40714692(c.2423G>A),
Insertions	+1kb 40732109 (c.-2045_-2044insTC), 40732612 (c.-2548_-2547insTT), 40732723 (c.-2659_-2658insGTGT), 40735366 (c.-5302_-5301insGGT), 40735391 (c.-5327_-5326insAATC), 5'UTR CDS 3'UTR INTRON 40720176 (c.866-844dupA), 40720623 (c.865+645_865+646insT), 40720729 (c.865+538_865+539dupGT), 40724050 (c.515-731_515-729dupTAT), 40725676 (c.463-497_463-496insTGCG), 40729343 (c.28-568dupC), -1kb 40710839 (c.6275_6276insACAA), 40713957 (c.3157_3158insA),
Deletions	+1kb 40731162 (c.-1098delC), 40731895 (c.-1831delA), 40732338 (c.-2284_-2274delATCCCTCTCCA), 40732532 (c.-2470_-2468delCCC), 40734898 (c.-4835_-4834delTT), 40735145 (c.-5082_-5081delTT), 5'UTR 40730099 (c.-40_-35delTTTTTC), CDS 3'UTR 40716655 (c.458_459delTA), 40716759 (c.355delT), 40716798 (c.316delT), INTRON 40718372 (c.1007+816_1007+819delAGAG), 40718928 (c.1007+262_1007+263delTG), 40719116 (c.1007+74_1007+75delAC), 40726678 (c.463-1499delG), 40726884 (c.462+1453_462+1457delAGCAA), 40727089 (c.462+1249_462+1252delGTGT), 40727468 (c.462+868_462+873delATTATA), 40727476 (c.462+864_462+865delTA), 40727485 (c.462+854_462+856delAAT), 40728960 (c.28-193_28-185delGCTTTTTTT), -1kb 40711127 (c.5985_5987delGAT), 40711366 (c.5747_5748delGG), 40711476 (c.5638delC), 40714777 (c.2329_2337delTCCCCTCCC), 40715654 (c.1459_*1460delTT),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	5
non-synonymous num	0
synonymous substitutions	40723171 (p.Lys222Lys), 40723240 (p.Val199Val), 40728393 (p.Gly137Gly), 40728528 (p.Gly92Gly), 40728743 (p.Arg21Arg),
non-synonymous substitutions
B6 transcript (ENSMUST00000021787)	MLVHSFSAMDRHDGTSNGTARLPQLGTVGQSPYTSAPPLSHTPNADFQPPYFPPPYQPIY PQSQDPYSHVNDPYSLNPLHAQPQPQHPGWPGQRQSQESGLLHTHRGLPHQLSGLDPRRD YRRHEDLLHGPHGLGSGLGDLPIHSLPHAIEDVPHVEDPGINIPDQTVIKKGPVSLSKSN SNAVSAIPINKDNLFGGVVNPNEVFCSVPGRLSLLSSTSKYKVTVAEVQRRLSPPECLNA SLLGGVLRRAKSKNGGRSLREKLDKIGLNLPAGRRKAANVTLLTSLVEGEAVHLARDFGY VCETEFPAKAVAEFLNRQHSDPNEQVARKNMLLATKQICKEFTDLLAQDRSPLGNSRPNP ILEPGIQSCLTHFNLISHGFGSPAVCAAVTALQNYLTEALKAMDKMYLSNNPNSHTDNSA KSSDKEEKHRK*
MSMv4 transcript	MLVHSFSAMDRHDGTSNGTARLPQLGTVGQSPYTSAPPLSHTPNADFQPPYFPPPYQPIY PQSQDPYSHVNDPYSLNPLHAQPQPQHPGWPGQRQSQESGLLHTHRGLPHQLSGLDPRRD YRRHEDLLHGPHGLGSGLGDLPIHSLPHAIEDVPHVEDPGINIPDQTVIKKGPVSLSKSN SNAVSAIPINKDNLFGGVVNPNEVFCSVPGRLSLLSSTSKYKVTVAEVQRRLSPPECLNA SLLGGVLRRAKSKNGGRSLREKLDKIGLNLPAGRRKAANVTLLTSLVEGEAVHLARDFGY VCETEFPAKAVAEFLNRQHSDPNEQVARKNMLLATKQICKEFTDLLAQDRSPLGNSRPNP ILEPGIQSCLTHFNLISHGFGSPAVCAAVTALQNYLTEALKAMDKMYLSNNPNSHTDNSA KSSDKEEKHRK*
homology	100.00 (432 / 432)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Tfap2a (ENSMUSG00000021359)
Transcript ID	ENSMUST00000021787


..........AGGCGGGACGCCGGGCCATGGAGGATCAGCGAGGCAGCGGGCAGCCGAGT
CCCGAGTCCCAGGCCCCGCTGCGCAACAGAGAATCTCGCGGCCGGAGAGCGGCGGGAAGC
ACCTCCCAGGCGCAGAACTCGGTGGGCAGCCGCCAGCGGGTCCCGGGAGCTCCAGCCCGC
GGCGCGCGACCCCCGCTCCATCCCGAGGTCTGCCCTAGCCTTTTAGGTCCGATTGTCCTC
CTTCGCTTCCTCTCCCCTCCCCCCCCACCCCGCCGCGGGCTCCCCCTCCGCAGCTCCGGC
TCGGCCCCCTCCTCCCCCTCCTCCTCCCTCCCTCCTGCCCTCCCTTCCTCCTCCCGGGCG
CTCCCTCCTTCCTCCCTCCCTCTCTCCACTCCTCTCTCTTCTAGTCGCCCACACTTTCTT
TCTCGCACACGCACGCAGACACATCCTCCCTCTCGGTGCTCCGACCCCCTCGGCCTCCCT
CTCTCGCCTTCTTTCTCTTTCACTTTTGCAGGCCCTGCAACCTTTTAAAATGTTGCCCCT
TTGCTGTGATTCGCCAGACGCCGCGCCGCGGCCCCCCGCACGCTCGCCCGCTCCCTCCGT
CGCTCGCTTTTTGTCTCTCGCGCTCCCTCTCCCCACCTCCGATTTGCTACACTGAGACTC
CCGTCAATGACTGCATAGAGAGCCGGCTCCGGCGCGAGTTGCCTCTCCGCTTCACGCTCG
ATTTCCAGGCATTCTTCCCTTATTAAGTATTCGTGTAATATTAATAGTCATGAATATCTG
CTATTAGGAGGCTCCAGGAACGCTGCCCAGCGCGGTTATTAGAAGCTGAAGTGAAGCCGC
CGCTAAGGAAAGAGGGGGAGACACGGATTAAGGAACACGCGCGCGCGCGCACACACACAC
ACACACACACACACACACTTTTTTCGTTTTTCTTTCTTTTCTTTTTTGGTGGTTTTTTTT
TTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTGTTGTTGTT
GGTGGTGTGGTTTTTGCTTTTTGTTTTTCCTAAAGAGCTCTGAAATCCTAACCGATCCTGGGAGGATAGAGATCGTGGGTTCGACCAGCTGAAGGCGCCGCGCGACTCGGTGGTACAAGTTCGGATGGATCCGAGCGGGGCTCCGGCGCTCGCGGCAGCGTCCGCGCGGTGACTGGAGTCCTGGGTGGCGCGGGGCTCTCGGCGCCTTTTGTGTGTGGCTCTTTCGGGCCGCGGGGCAGCCGGGTGCTCGAGGCGTGGTGGTTTTTTGCTTTTTGCTTTTTTGCTTTGGTTATTGTTGTTGGCTTTTTTTTTTTTTTTCCTCACCCTGACTGGTTACCCCAGACTCTTCGCAGATGTTAGTTCACAGTTTTTCAGCTATG
GTGAGTCCCACCCCACCCCCAACCC..........CCCTTCCCGTCTTGCTTTCTTCCAG
GACCGTCACGACGGCACCAGCAACGGGACGGCAAGGTTGCCCCAGCTGGGCACTGTAGGTCAATCTCCCTACACCAGCGCCCCGCCGCTGTCCCACACCCCTAATGCCGACTTCCAGCCTCCCTACTTCCCCCCGCCCTACCAGCCTATCTACCCCCAGTCGCAAGATCCTTACTCCCACGTCAACGACCCCTACAGCCTGAATCCTCTGCACGCCCAGCCGCAGCCGCAGCACCCGGGCTGGCCCGGCCAGAGGCAGAGCCAGGAATCTGGGCTCTTACACACACACCGGGGCTTACCCCACCAACTGTCGGGCCTGGACCCTCGCAGGGACTATCGGCGGCACGAGGACCTCTTGCACGGCCCGCACGGGCTCGGCTCTGGACTCGGGGACCTCCCGATCCACTCCTTACCTCACGCCATCGAGGACGTCCCG
GTAAGAGGCGGTGCAGGCCGCGGGA..........ATTCATGTGTATCCTTTTGTTGTAG
CACGTAGAAGACCCGGGTATTAACATCCCAGATCAAACTGTAATTAAGAAAG
GTAAGCCATTTCCTTCTTCATTCCA..........CACGCGCCCGCATCTGTCTTCGCAG
GCCCCGTGTCCCTGTCCAAGTCCAACAGCAATGCTGTCTCCGCCATCCCTATTAACAAGGACAACCTCTTCGGTGGCGTGGTGAACCCCAACGAAGTCTTCTGTTCAGTTCCGGGTCGCCTGTCGCTCCTCAGCTCCACCTCGAAGTACAAAGTCACGGTGGCGGAAGTACAGCGGCGCCTCTCACCGCCCGAGTGTCTTAACGCGTCGCTCCTGGGCGGAGTACTGCGGAG
GTGAGGCTCGGACCGGCCCCGCCCC..........CCTGCCTCCCATGTTTCTGAAACAG
AGCGAAGTCTAAGAATGGAGGGAGATCTTTAAGAGAAAAACTGGACAAGATAGGATTGAATCTGCCAGCAGGGAGACGTAAAGCTGCCAACGTTACCCTCCTCACGTCACTAGTGGAAG
GTAAACAGATCTGCTTGCTATCTGG..........ACTTCCCTCCTCCACCTCTTGCCAG
GAGAAGCCGTCCACCTAGCCAGGGACTTTGGGTACGTGTGCGAAACTGAATTTCCTGCCAAAGCAGTAGCAGAATTTCTCAACCGACAACATTCCGATCCCAATGAGCAAGTGGCAAGAAAAAACATGCTCCTGGCCACAAA
GTAAGGCATTTACCTCTGCAGGGTC..........CACTTCTGTCTCTGTTCCACTGCAG
ACAGATCTGCAAAGAGTTCACTGACCTGCTGGCTCAGGACCGATCTCCCCTGGGGAACTCGCGGCCCAATCCTATCCTGGAGCCTGGCATCCAGAGTTGCTTGACCCACTTCAACCTCATCTCCCATGGCTTCGGCAGCCCGGCGGTGTGTGCAGCGGTTACGGCCCTGCAGAACTATCTCACCGAGGCCCTCAAGGCCATGGACAAAATGTACCTCAGCAACAACCCCAACAGCCACACGGACAACAGCGCCAAAAGCAGTGACAAAGAAGAGAAACACAGAAAGTGAGGCTCTCCTCCCGCCCCGCCCCCGCCCGCCTCACCGGCCCGCGTCCCCCCACTCGCCCCTCCCCCACCCGGCAGGTGACAGCTCCGGGACCAGCCACTCCTACTGCTGCTGCTACTCTGCGTTGCCGCGCCGCCCTTCGTCCCCGGAGTCCTCCGGATTGCTCTCTCGACTGCCAGTGGGGCAGCCGCTGCCTACTCAGCGCCTTGCCTCAACTTCCCCATCAGCACCAACACCCCCTTTACCCTCGTGTGGAGCCTAAGAGAACAGAACAGGTCGTGAAGCCAGCAAAGAAAAGTTCTGTCGCGTTTGTGAACCTTTTTTTTTTTAAATCAAATCCACAACAAACATTAAAACTTTTTTTTTTTAAAAAGGACGTTAAAAAATTTAAAAAGTATATGAGCTTCATGGGACTAACTCATCGCCTTCCCTTGCGTACTTCAGATTGTAGCCATACTTTTAAAAAAAAAGGCAAAGAGGATAATGACATTTTTTATCAGTATTGTGAATAAACTTGAACACAAATACAGAAGTTCTATGTCCTGTCTTCAGTTGTAGAAGTTGTCTTCTGCAAGGTACAACCACCCACTTGAACTTCCTCTGATGACACAATCCACAATTCTATAAGGGAATCAGTGTTCACGTCTCTGTATATATTTATTTATGTGTAATTTAATGGGATTTGTAAATATGGTGAGTCTGTTTTAAACCTTTTTTTATTTATCTGGTGATCTCGTTTACCTCCTGTTTAGTGGGCTTTGGATCCTCCCTGTTAGTTCTTCATGTGGTTTTACTTAGAAATCCAAGGTTTGGGTAAGACTCCCCCTCCCCACCCCTTTTCTCCAATTCATGGATTTAGCCCCGTGGTAGCATGTTAAACGATTATAATGAAACAGCTGAACAAAAACATTTTTAAGGTAAAATAAAAATTTATATATAATTAGTATTACATTTAGCTTTTCATTGAACTGACAGGAAAAAAATCAGTGATATTGGGAGATTGGAAAAAAATTTCTTAAACTGGAGTGATTTGATAATCCTTCTATGGTATCATGGGGAGAAAAATAAAGTTTATTTGAGTTCACTGTCCTCCCTTAAAAGCGTCCTTCGAGCAATAAATGAATATTGTCTTTAAACCAAGGGTTAGGGATTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTGCCTTTCTCTCTCTCTGCCTTTCTCTCTCTCTCTCTGCCTCTCTTTGTTCATCTTTAAACATTTGGGACCACCTGGGCTTCTGTGTCTTCGCTGGCCACATTGGAAGCAGTCCTAGCTGCACTGTGTTGAGTTGCTCTGGCAGGAGCCTCTATGCCTGTCAATGTATCATAGTCCTTTGTTGCCCAGATAAATAAATATTTGATACGCT
TTATGTCGATTTTTTTTTTTATTCAGTGGCTGTCTTTACCCAGGCGTATTTTTGTTCTTG
GCAGTATTTTTTATTCAGTATGGTTACAGTAATTGAGTTTAACTCTCCCTTGGCAATTGC
TCTTTGCAATAAGCAGCTGAACCCATTGCTTCCCTCAAGTATAATAAAAACTTACTTTCA
ACTTGGAGTTCAGAGCAGGGTATCATTTAGATATTCCACTGAGTCTGTATTCAGACAAAC
GACCCAATAAAGCCCGATGTATTCTTTTGGATAAAAGATTGTTTGTACTGCTAAAGGAAT
GACATGCTATTGCTTCCTGACCGGGGGCATTAACTTTATTATTAAAAATAAAGTTTTATT
TTATTTATGTTGATCCTTTAGGTTTTCATTTGCATTTTGGAAGCCAAAATTCTAAACTCT
CAGAACTAAACATTAGAAATGACAGATCCGGTTGTGAGTGGAGTCAGAACAGAAGAAGCC
CTCCCCCCTGAGTGGCTCCAGAATCTGTCTCAGAAGACAACTGAAACTCAAATGATTAGT
TCATTAGTACAAGGAAGATGGCCGTTACAGTCTTGTTTGCTTAGACTTTTATGGCTTAAG
CTAACTCTCATTTTTCTGGGAGAAGAAAAGGAAAGGTGGCGGAAATATTCATGGAACCCA
GAAAGAGAGGCCAGATGCCCCATTTGCTCTAATATTTCATCTAGAGATGAATTCACTACT
GGAGCCAGAAGAGGGGAGTAGCAAAGTAGGTGGGTCTCTGGAATCTTTGACACCCCCACC
CCAAATTCAGGCACACCCAAAACCCTTTCTATCTTGACTGGCTCCTCCCAGGACCTTTTA
GAAACACAAAAGTCTCCAAAGTGGACAGGAGAGGGTGGCAGAGGGCCTTCCCCTCCCCCC
CCCCCAACCTTCTCTATCAGTCTTCTACAATAACAGGACTGCTCTGGGGAAAGGAAGCAC
CTTCTAGCCCAGGAAGAGGGCGAATTCAGAGCCTTTTGTA..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........AGGCGGGACGCCGGGCCATGGAGGATCAGCGAGGCAGCGGGCAGCCGAGT CCCGAGTCCCAGGCCCCGCTGCGCAACAGAGAATCTCGCGGCCGGAGAGCGGCGGGAAGC ACCTCCCAGGCGCAGAACTCGGTGGGCAGCCGCCAGCGGGTCCCGGGAGCTCCAGCCCGC GGCGCGCGACCCCCGCTCCATCCCGAGGTCTGCCCTAGCCTTTTAGGTCCGATTGTCCTC CTTCGCTTCCTCTCCCCTCCCCCCCCACCCCGCCGCGGGCTCCCCCTCCGCAGCTCCGGC TCGGCCCCCTCCTCCCCCTCCTCCTCCCTCCCTCCTGCCCTCCCTTCCTCCTCCCGGGCG CTCCCTCCTTCCTCCCTCCCTCTCTCCACTCCTCTCTCTTCTAGTCGCCCACACTTTCTT TCTCGCACACGCACGCAGACACATCCTCCCTCTCGGTGCTCCGACCCCCTCGGCCTCCCT CTCTCGCCTTCTTTCTCTTTCACTTTTGCAGGCCCTGCAACCTTTTAAAATGTTGCCCCT TTGCTGTGATTCGCCAGACGCCGCGCCGCGGCCCCCCGCACGCTCGCCCGCTCCCTCCGT CGCTCGCTTTTTGTCTCTCGCGCTCCCTCTCCCCACCTCCGATTTGCTACACTGAGACTC CCGTCAATGACTGCATAGAGAGCCGGCTCCGGCGCGAGTTGCCTCTCCGCTTCACGCTCG ATTTCCAGGCATTCTTCCCTTATTAAGTATTCGTGTAATATTAATAGTCATGAATATCTG CTATTAGGAGGCTCCAGGAACGCTGCCCAGCGCGGTTATTAGAAGCTGAAGTGAAGCCGC CGCTAAGGAAAGAGGGGGAGACACGGATTAAGGAACACGCGCGCGCGCGCACACACACAC ACACACACACACACACACTTTTTTCGTTTTTCTTTCTTTTCTTTTTTGGTGGTTTTTTTT TTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTGTTGTTGTT
1	EXON 1	40,730,039	40,730,418	-	0	380	GGTGGTGTGGTTTTTGCTTTTTGTTTTTCCTAAAGAGCTCTGAAATCCTAACCGATCCTG GGAGGATAGAGATCGTGGGTTCGACCAGCTGAAGGCGCCGCGCGACTCGGTGGTACAAGT TCGGATGGATCCGAGCGGGGCTCCGGCGCTCGCGGCAGCGTCCGCGCGGTGACTGGAGTC CTGGGTGGCGCGGGGCTCTCGGCGCCTTTTGTGTGTGGCTCTTTCGGGCCGCGGGGCAGC CGGGTGCTCGAGGCGTGGTGGTTTTTTGCTTTTTGCTTTTTTGCTTTGGTTATTGTTGTT GGCTTTTTTTTTTTTTTTCCTCACCCTGACTGGTTACCCCAGACTCTTCGCAGATGTTAG TTCACAGTTTTTCAGCTATG
	INTRON 1 - 2	40,728,777	40,730,038			1,262	GTGAGTCCCACCCCACCCCCAACCC..........CCCTTCCCGTCTTGCTTTCTTCCAG
2	EXON 2	40,728,342	40,728,776	0	0	435	GACCGTCACGACGGCACCAGCAACGGGACGGCAAGGTTGCCCCAGCTGGGCACTGTAGGT CAATCTCCCTACACCAGCGCCCCGCCGCTGTCCCACACCCCTAATGCCGACTTCCAGCCT CCCTACTTCCCCCCGCCCTACCAGCCTATCTACCCCCAGTCGCAAGATCCTTACTCCCAC GTCAACGACCCCTACAGCCTGAATCCTCTGCACGCCCAGCCGCAGCCGCAGCACCCGGGC TGGCCCGGCCAGAGGCAGAGCCAGGAATCTGGGCTCTTACACACACACCGGGGCTTACCC CACCAACTGTCGGGCCTGGACCCTCGCAGGGACTATCGGCGGCACGAGGACCTCTTGCAC GGCCCGCACGGGCTCGGCTCTGGACTCGGGGACCTCCCGATCCACTCCTTACCTCACGCC ATCGAGGACGTCCCG
	INTRON 2 - 3	40,725,181	40,728,341			3,161	GTAAGAGGCGGTGCAGGCCGCGGGA..........ATTCATGTGTATCCTTTTGTTGTAG
3	EXON 3	40,725,129	40,725,180	0	1	52	CACGTAGAAGACCCGGGTATTAACATCCCAGATCAAACTGTAATTAAGAAAG
	INTRON 3 - 4	40,723,323	40,725,128			1,806	GTAAGCCATTTCCTTCTTCATTCCA..........CACGCGCCCGCATCTGTCTTCGCAG
4	EXON 4	40,723,091	40,723,322	1	2	232	GCCCCGTGTCCCTGTCCAAGTCCAACAGCAATGCTGTCTCCGCCATCCCTATTAACAAGG ACAACCTCTTCGGTGGCGTGGTGAACCCCAACGAAGTCTTCTGTTCAGTTCCGGGTCGCC TGTCGCTCCTCAGCTCCACCTCGAAGTACAAAGTCACGGTGGCGGAAGTACAGCGGCGCC TCTCACCGCCCGAGTGTCTTAACGCGTCGCTCCTGGGCGGAGTACTGCGGAG
	INTRON 4 - 5	40,721,388	40,723,090			1,703	GTGAGGCTCGGACCGGCCCCGCCCC..........CCTGCCTCCCATGTTTCTGAAACAG
5	EXON 5	40,721,269	40,721,387	2	1	119	AGCGAAGTCTAAGAATGGAGGGAGATCTTTAAGAGAAAAACTGGACAAGATAGGATTGAA TCTGCCAGCAGGGAGACGTAAAGCTGCCAACGTTACCCTCCTCACGTCACTAGTGGAAG
	INTRON 5 - 6	40,719,334	40,721,268			1,935	GTAAACAGATCTGCTTGCTATCTGG..........ACTTCCCTCCTCCACCTCTTGCCAG
6	EXON 6	40,719,192	40,719,333	1	2	142	GAGAAGCCGTCCACCTAGCCAGGGACTTTGGGTACGTGTGCGAAACTGAATTTCCTGCCA AAGCAGTAGCAGAATTTCTCAACCGACAACATTCCGATCCCAATGAGCAAGTGGCAAGAA AAAACATGCTCCTGGCCACAAA
	INTRON 6 - 7	40,717,404	40,719,191			1,788	GTAAGGCATTTACCTCTGCAGGGTC..........CACTTCTGTCTCTGTTCCACTGCAG
7	EXON 7	40,715,675	40,717,403	2	-	1,729	ACAGATCTGCAAAGAGTTCACTGACCTGCTGGCTCAGGACCGATCTCCCCTGGGGAACTC GCGGCCCAATCCTATCCTGGAGCCTGGCATCCAGAGTTGCTTGACCCACTTCAACCTCAT CTCCCATGGCTTCGGCAGCCCGGCGGTGTGTGCAGCGGTTACGGCCCTGCAGAACTATCT CACCGAGGCCCTCAAGGCCATGGACAAAATGTACCTCAGCAACAACCCCAACAGCCACAC GGACAACAGCGCCAAAAGCAGTGACAAAGAAGAGAAACACAGAAAGTGAGGCTCTCCTCC CGCCCCGCCCCCGCCCGCCTCACCGGCCCGCGTCCCCCCACTCGCCCCTCCCCCACCCGG CAGGTGACAGCTCCGGGACCAGCCACTCCTACTGCTGCTGCTACTCTGCGTTGCCGCGCC GCCCTTCGTCCCCGGAGTCCTCCGGATTGCTCTCTCGACTGCCAGTGGGGCAGCCGCTGC CTACTCAGCGCCTTGCCTCAACTTCCCCATCAGCACCAACACCCCCTTTACCCTCGTGTG GAGCCTAAGAGAACAGAACAGGTCGTGAAGCCAGCAAAGAAAAGTTCTGTCGCGTTTGTG AACCTTTTTTTTTTTAAATCAAATCCACAACAAACATTAAAACTTTTTTTTTTTAAAAAG GACGTTAAAAAATTTAAAAAGTATATGAGCTTCATGGGACTAACTCATCGCCTTCCCTTG CGTACTTCAGATTGTAGCCATACTTTTAAAAAAAAAGGCAAAGAGGATAATGACATTTTT TATCAGTATTGTGAATAAACTTGAACACAAATACAGAAGTTCTATGTCCTGTCTTCAGTT GTAGAAGTTGTCTTCTGCAAGGTACAACCACCCACTTGAACTTCCTCTGATGACACAATC CACAATTCTATAAGGGAATCAGTGTTCACGTCTCTGTATATATTTATTTATGTGTAATTT AATGGGATTTGTAAATATGGTGAGTCTGTTTTAAACCTTTTTTTATTTATCTGGTGATCT CGTTTACCTCCTGTTTAGTGGGCTTTGGATCCTCCCTGTTAGTTCTTCATGTGGTTTTAC TTAGAAATCCAAGGTTTGGGTAAGACTCCCCCTCCCCACCCCTTTTCTCCAATTCATGGA TTTAGCCCCGTGGTAGCATGTTAAACGATTATAATGAAACAGCTGAACAAAAACATTTTT AAGGTAAAATAAAAATTTATATATAATTAGTATTACATTTAGCTTTTCATTGAACTGACA GGAAAAAAATCAGTGATATTGGGAGATTGGAAAAAAATTTCTTAAACTGGAGTGATTTGA TAATCCTTCTATGGTATCATGGGGAGAAAAATAAAGTTTATTTGAGTTCACTGTCCTCCC TTAAAAGCGTCCTTCGAGCAATAAATGAATATTGTCTTTAAACCAAGGGTTAGGGATTTC TCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTCT CTCTCTCTCTCTCTCTCTCTGCCTTTCTCTCTCTCTGCCTTTCTCTCTCTCTCTCTGCCT CTCTTTGTTCATCTTTAAACATTTGGGACCACCTGGGCTTCTGTGTCTTCGCTGGCCACA TTGGAAGCAGTCCTAGCTGCACTGTGTTGAGTTGCTCTGGCAGGAGCCTCTATGCCTGTC AATGTATCATAGTCCTTTGTTGCCCAGATAAATAAATATTTGATACGCT
	3' upstream sequence						TTATGTCGATTTTTTTTTTTATTCAGTGGCTGTCTTTACCCAGGCGTATTTTTGTTCTTG GCAGTATTTTTTATTCAGTATGGTTACAGTAATTGAGTTTAACTCTCCCTTGGCAATTGC TCTTTGCAATAAGCAGCTGAACCCATTGCTTCCCTCAAGTATAATAAAAACTTACTTTCA ACTTGGAGTTCAGAGCAGGGTATCATTTAGATATTCCACTGAGTCTGTATTCAGACAAAC GACCCAATAAAGCCCGATGTATTCTTTTGGATAAAAGATTGTTTGTACTGCTAAAGGAAT GACATGCTATTGCTTCCTGACCGGGGGCATTAACTTTATTATTAAAAATAAAGTTTTATT TTATTTATGTTGATCCTTTAGGTTTTCATTTGCATTTTGGAAGCCAAAATTCTAAACTCT CAGAACTAAACATTAGAAATGACAGATCCGGTTGTGAGTGGAGTCAGAACAGAAGAAGCC CTCCCCCCTGAGTGGCTCCAGAATCTGTCTCAGAAGACAACTGAAACTCAAATGATTAGT TCATTAGTACAAGGAAGATGGCCGTTACAGTCTTGTTTGCTTAGACTTTTATGGCTTAAG CTAACTCTCATTTTTCTGGGAGAAGAAAAGGAAAGGTGGCGGAAATATTCATGGAACCCA GAAAGAGAGGCCAGATGCCCCATTTGCTCTAATATTTCATCTAGAGATGAATTCACTACT GGAGCCAGAAGAGGGGAGTAGCAAAGTAGGTGGGTCTCTGGAATCTTTGACACCCCCACC CCAAATTCAGGCACACCCAAAACCCTTTCTATCTTGACTGGCTCCTCCCAGGACCTTTTA GAAACACAAAAGTCTCCAAAGTGGACAGGAGAGGGTGGCAGAGGGCCTTCCCCTCCCCCC CCCCCAACCTTCTCTATCAGTCTTCTACAATAACAGGACTGCTCTGGGGAAAGGAAGCAC CTTCTAGCCCAGGAAGAGGGCGAATTCAGAGCCTTTTGTA..........

Sequence Detail Report

Gene Symbol (Gene ID)	Tfap2a (ENSMUSG00000021359)
Transcript ID	ENSMUST00000021787

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 432 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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