top page

Tutorials are available here.

Target CDS Information

Gene Symbol (Gene ID) Elovl2 (ENSMUSG00000021364)
Cross Reference
CCDS CCDS36639.1
EMBL AF170908, AK014803, AK029855, ...show all
Fantom 4921503C17, 4931413E19, A930041F19, ...show all
GO GO:0000038, GO:0005515, GO:0005783, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name Elovl2-001
OTTP OTTMUSP00000038380
OTTT OTTMUST00000074002
protein_id AAF72573.1, AAH98215.1, BAB29559.1, ...show all
Reactome R-MMU-1430728, R-MMU-2046104, R-MMU-2046105, ...show all
RefSeq_mRNA NM_019423.2
RefSeq_peptide NP_062296
UCSC uc007qfb.2
UniParc UPI0000003F98
Uniprot/SPTREMBL Q543J1
Uniprot/SWISSPROT Q9JLJ4
Vega_transcript Elovl2-001, OTTMUST00000074002
Vega_translation 214383, OTTMUSP00000038380
Definition protein_id:ENSMUSP00000021793
translation:
MEQLKAFDNEVNAFLDNMFGPRDSRVRGWFLLDSYLPTFILTITYLLSIWLGNKYMKNRP
ALSLRGILTLYNLAITLLSAYMLVELILSSWEGGYNLQCQNLDSAGEGDVRVAKVLWWYY
FSKLVEFLDTIFFVLRKKTNQITFLHVYHHASMFNIWWCVLNWIPCGQSFFGPTLNSFIH
ILMYSYYGLSVFPSMHKYLWWKKYLTQAQLVQFVLTITHTLSAVVKPCGFPFGCLIFQSS
YMMTLVILFLNFYIQTYRKKPVKKELQEKEVKNGFPKAHLIVANGMTDKKAQ

Chromosome 13
Length
Position(start - end)
35,062
41,185,294 - 41,220,357
Orient to Chromosome minus
Link Location : (13:41185294-41220357)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Elovl2 (ENSMUSG00000021364)
Transcript ID ENSMUST00000021793
Reports
substitution
cSNPs4
Insertion40
Deletion54
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num2
non-synonymous num2
synonymous substitutions 41186868 (p.Leu250Leu), 41187441 (p.Thr206Thr),
non-synonymous substitutions 41186858 (p.Ile254Val), 41186877 (p.Ile247Met),
B6 transcript
(ENSMUST00000021793)
MEQLKAFDNEVNAFLDNMFGPRDSRVRGWFLLDSYLPTFILTITYLLSIWLGNKYMKNRP
ALSLRGILTLYNLAITLLSAYMLVELILSSWEGGYNLQCQNLDSAGEGDVRVAKVLWWYY
FSKLVEFLDTIFFVLRKKTNQITFLHVYHHASMFNIWWCVLNWIPCGQSFFGPTLNSFIH
ILMYSYYGLSVFPSMHKYLWWKKYLTQAQLVQFVLTITHTLSAVVKPCGFPFGCLIFQSS
YMMTLVILFLNFYIQTYRKKPVKKELQEKEVKNGFPKAHLIVANGMTDKKAQ*
MSMv4 transcript
MEQLKAFDNEVNAFLDNMFGPRDSRVRGWFLLDSYLPTFILTITYLLSIWLGNKYMKNRP
ALSLRGILTLYNLAITLLSAYMLVELILSSWEGGYNLQCQNLDSAGEGDVRVAKVLWWYY
FSKLVEFLDTIFFVLRKKTNQITFLHVYHHASMFNIWWCVLNWIPCGQSFFGPTLNSFIH
ILMYSYYGLSVFPSMHKYLWWKKYLTQAQLVQFVLTITHTLSAVVKPCGFPFGCLIFQSS
YMMTLVMLFLNFYVQTYRKKPVKKELQEKEVKNGFPKAHLIVANGMTDKKAQ*
homology99.32 (293 / 293)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Elovl2 (ENSMUSG00000021364)
Transcript ID ENSMUST00000021793
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........ATTGGCTCCCAGTCCTCTCTAAGTTCATTCAGATACACTGTCCGGGTGTG
AACTAGAAGCTATGCAAAGAAAGAGAGAAGATCTGTATTTCCAAGTTTTTTTTTTTAAAG
ATCATTCTTATCTTTGTCCACAGAGGTACCTAACACCTGTGTATTCGTTTCAAGTTTACC
GCATCAGCTATCTAAGAAAAATGCGCGCTCATTCTGAAGGCAATGTGAAAAGCAGTCATT
TGACACTCAAAGGCCTGGAATCTAGTTCTGTACACCATTAACGAAGCATTTGAATAAGCC
ATCTGAGCCCCTGACAGCCCCTCTGGAAGCAAGCTCTGAAAAAGTCAGTTTAGACAGAGT
ATTGGTGCTCATCTGCTCCCCGTGGCACCCAGAATGAATGGTTATCGTTTGCTTATTTGT
TTGCTTATTTGAAGCAGGGTCTCACGAAGCTCAGGTTGGTGCAGAACTCCCTAAGAAGCC
AAGGCTGATCTTGAACTCTTTCCTATTCCTCCTGGCCCTGCTCTTAAGTGCTGGGATTAT
ACAGGTGCACCAACCCAAGACCAGACCAGCCCTTGGTCATCCTCGCAAACCGGTGTGCCC
AATTTAAATCATCCGGCGCGCTCGCCCAGCCACTCCCCAGGAGTAGCGGAGGAGCTGCTG
GTGGCTTCTCCAGGAGCCTGATGCTGTGATAGACGTGGGCGCCCAGACGCCTGCAAAAGG
CGCCAGCTGTGCTTGCAAATCCCAGCCCAGCCGGCAGGGGGCGCCGCGCCAGCGCCGGCG
GGGGCGCGCGCGGAGCGGGGACGCGCAGGCCTCTGGGGGGCCCACGGCCTCGCGGCCGGT
GCCGGGGCTCCTCCCACTCCGTGGTCCCCTCCGAGGGCCAGCGGCGCGGGGCGGAGGAAA
CGGCCCGGAGCGGGCAGGGCGCGGCGCGCGCCCGAGGGGGCGGGGAGGCGGGCGGCGCGC
GCCCGAGGGGGCGGGGGCGAGTGACTAGCGCGGGCGGCGCGTGGCGCGGC
1 EXON 1 41,220,355 41,220,405 - 0 51
GCAGAAGGAAGGCGGCTACCCTGGACAGCGCATCGCGGCCGCGCGGCCATG
INTRON 1 - 2 41,197,199 41,220,354 23,156
GTGAGTGAGTGGGGGGCCGCGCGCC..........CTGCTTAATTTTCCCTGTCTTTCAG
2 EXON 2 41,197,135 41,197,198 0 1 64
GAGCAGCTGAAGGCCTTTGATAATGAAGTCAATGCTTTCTTGGACAACATGTTTGGACCA
CGAG
INTRON 2 - 3 41,194,835 41,197,134 2,300
GTGAGTAAGCCGCTTGGAAACATGC..........CCTCACCGTAAGCATTTCTTTACAG
3 EXON 3 41,194,647 41,194,834 1 0 188
ATTCTCGAGTTCGCGGGTGGTTCCTGCTGGACTCTTACCTTCCCACCTTCATCCTCACCA
TCACGTACCTGCTCTCGATATGGCTGGGTAACAAGTACATGAAGAACAGGCCTGCTCTGT
CTCTCAGGGGCATCCTCACCTTGTATAACCTCGCAATCACACTTCTTTCTGCGTATATGC
TGGTGGAG
INTRON 3 - 4 41,191,966 41,194,646 2,681
GTAAGTGGCTGTGGCCTGCACTCTG..........TTTCCCTTTCTTGGTGCTCTGGCAG
4 EXON 4 41,191,888 41,191,965 0 0 78
CTCATCCTCTCCAGCTGGGAAGGAGGTTACAACTTGCAGTGTCAGAATCTCGACAGTGCA
GGAGAAGGTGATGTCCGG
INTRON 4 - 5 41,190,118 41,191,887 1,770
GTGAGTCCTGAGACTGTTGCCATTG..........TTCCCCCTCCTTGAACTTGTTACAG
5 EXON 5 41,189,946 41,190,117 0 1 172
GTAGCCAAGGTCTTGTGGTGGTACTACTTCTCCAAACTAGTGGAGTTCCTGGACACGATT
TTCTTTGTTCTACGAAAAAAGACCAATCAGATCACCTTCCTTCATGTCTATCACCACGCG
TCCATGTTCAACATCTGGTGGTGTGTTTTGAACTGGATACCTTGTGGTCAAA
INTRON 5 - 6 41,187,554 41,189,945 2,392
GTAAGTCATTGTGGTAACTCTTGCT..........TAACTTGCATGCTCCACTGTCACAG
6 EXON 6 41,187,429 41,187,553 1 0 125
GCTTCTTTGGACCCACCCTGAACAGCTTTATCCACATTCTCATGTACTCCTACTACGGCC
TGTCTGTGTTCCCGTCCATGCACAAGTACCTTTGGTGGAAGAAGTACCTCACGCAGGCTC
AGCTG
INTRON 6 - 7 41,186,988 41,187,428 441
GTAAGTTCTCCTTTCTTTGCTTTTC..........CACCCGCAGCCTCTCTGCCTTCCAG
7 EXON 7 41,186,853 41,186,987 0 0 135
GTGCAGTTCGTACTCACCATCACGCACACGCTGAGTGCCGTGGTGAAGCCCTGTGGCTTC
CCCTTTGGCTGTCTCATCTTCCAGTCTTCCTATATGATGACGCTGGTCATGCTGTTCTTG
AACTTCTATGTTCAG
INTRON 7 - 8 41,185,408 41,186,852 1,445
GTAAGTAAGGTGTGAGTGTTCAGGG..........TCTTCTCCTGTCTACACTCTGACAG
8 EXON 8 41,182,495 41,185,407 0 - 2,913
ACATACCGGAAAAAGCCAGTGAAGAAAGAGCTGCAAGAGAAAGAAGTGAAGAATGGTTTC
CCCAAAGCCCACTTAATTGTGGCTAATGGCATGACGGACAAGAAGGCTCAATAAAATGAA
GTGCCGGGGAACACAAACTGAGGTGGTGGCGGCGGCGGCGGCGGCAGCAAACAGATGAGC
TTGTTTTAAAGCAGAGACTGAATAGAAAGTTGTATGTTTTAGCATAAACTAATTCCTTTT
GAGTTTGTAAATCATTTGTACCCAGAATGTATTATAATATATTGCTATTAGGTTACTCTA
CTAACTGGAGCCATGCCGACCTCTACAAACCTTGAACAGGTGCACAGCCCCCTCTCCGGA
GCGCTTTGTAATGCCTTATTCACGTCGAAAACCAGGAGACTCGGGCTTCGTTTCTTCATG
GCAAGTCTTCAGAGTTAATTTTCTTTAGATGTGTAAAACTGTTCATTGTAGTGTAAATGT
CAGGGTCTGTTCTAGTCTATGTCAAGCAATAACTGTCAGTGCATAAATCGATTAGTCTGC
TGTTGCTTAAGGCAGCAGCCCCAGGCAGCATTTAAGCGGGATCCTTAGCAAGACAGAATA
CAGCAAAACCCTTTCCCCTCTCAAGCCAGGAGTCTCATCTGCTACATTTTTTTTAACCAC
CTCTGATTTCCAACTTAGTGATGTGGTAATGAAATTCGTTTGTCTTCAATATAGTTTGAA
GATTAGTCATTCCATGAAGGAACAGCCTCTTGAGCTGGGTATGGTGGCACCCATCTGTGA
GTCCAGCATTTGGGTATTGAGACAGCCTAGGGTACACAGGCACAAGACCCTGTCTCAACC
AGAAAAGAAAAATGTGTTTGCCAAATCATAACTCAGGGGCTTTGAACAGAGCTGTCTCTG
TTTCAATTGGCATCCTTGCTCATCCATTCCTGTCTACCTCCCTTGTTAGTCTAGATTTCT
GGAGTTATGTTCCCCACATCCAAAGCCAGTGTCTACATACAGCTGCCATGCCCTTTCTGA
ACAAAGGCTGGAGTTGTCCAATTGCAGTTCTTCTTCGCATAGAAATGCAATTGGAATATT
TACAAATCATAATCAACAGAGCCCCAGGGGCAAAATAGACATTCTATTTGTCAGCTGTTG
CTGCTGAGCCTGCTGGTGAACACCATTGCAAGCAGTTGCTGAGCCTGCTGGTGAACACCA
TTGCAAGCCATTGCTGAGCCTGCTGGTGAACACCATTGCAAGCCATTGCTGTCAAGCTTC
ATGAGTTAAATTTAACTGTTAGAGAGGAGAAAAGTATAGCAGTCGTTTGGAACGATCTCG
TGGGGTGGGACTAAGCCATAATGATGTGTCTGGCCCAAGCAGCAATGCTGTCCCTGCTCA
GAACTGTGGTCTCTGTGGAGAACCTAGTACAGAGCCTGAGCAAGGCAATGGACCACCTCC
TTTTCCTCAAACTGATGGATCACCACTGTTAAACTATACCAGGTGTGAAAAAGGGCATTT
TCCAAAACATACACAAAACACAACTTACTCTATTTCCCCTCCATTTCAGCAAATGTGTTC
TTGGTTCATGGCACTGGCACCCAGCGCATGGGCACCAGGTAGGTGTTCCTCGAGTGCCAA
CGGCGGGGCCTGCCCACCCCTGTCTTCCTTTCTGGGCAAGCTCCCATTTTAACTTTTCCC
TGTTAAAAATTGTACTGATGTTTTAAACTCGTAACTATACCACCCTTCTCACTGGTGTAT
TTTGAAAACCACCACAGTCCGATGTCCTGTGCCATGTCTGTCATTCCTGTTGAACAGACT
CTTCCTGTCTGGTGACCACCTATGCTTCAGTGCATTTTCTAAACAATTTCTCAAACTGAT
CTGCTCCCGGGTGCTTTCTTACCACCATCTCTGGTGACTTAGCCTCAAATTGGTGTTTTT
CTTTCCCAAGAATTCATCTTAAGGGTTAGCTTTGAGTATGTTACTGTCCTTCTATGACAA
GACCAAAGGAACAAACTCCTTGGTGAATCTGGAGTTCAGCTTTAGTTTTCAAACACAATC
TGAAATCTGTTAGTAAAATGAATTCTGGGTAAAAATGAGACTCAAGAGGCATCACTGGCC
ATTGTACCAGATTATTCCTGCTCGCCAGTGAGAGGCGTTTAAGTCGCGCTGTGCATCGTA
CCTTCAGTTTAGGCTGTTTTCATGACCTCACATCTGTGTAGCACAAAGGGTGTTATCTTC
CTATAGCAGATCAACAGTGGCAGCTCACAGTACCAGCCAGCTTTAGACCTCCCAGTGCAA
AGCCCAGCGCAGCACTAAGCCTTAAGCCACCCAAGGGCTGACACACCATGCAGAGCTACG
AAATCTGTGCTGAGAAAATGCCATCTGGAAAGATTTTTAACCCATTCATTCTTAGTGTGA
ATTTTCTAAAATAGCAGTATAAAAAAAAAGTCTCTATAATCTGATAGAAAACCGTCTTTT
CCCAAGTGAATTCCCTTTTATTCATGAGAACAAAAGTACTTAGATACTATAAAACCTTAA
TTTCCCCAACTTTTAAAATAAAATGGAATATTTGCTGAATGAATTAAGCATAGAAAATGT
CAACCCATCAGAATTATATTTATACATATTGGTGGATAAGTTCTTGTCTTCCCACATCAG
AGAATTTTTTTTTAAACCAAAATGGGCAGAATAGCATTTTGTATGTTAGAGACCATTCTT
TTCTAGTCCTTCCAAACATTCCTGTGTCACTTAAGAATGTTAGTAGAGGTCGCTTCTTTG
GAAATTGAGGACTTTTTTTTTTCCTTTGAAAGTATGGCATCTGAAGAACACAGTATCATG
ACTCGGGTGGAAAGGGAGGCAGAAGCCATTTTTCTTTTAGATGAAAAGCATTCTGTGTGA
TTGTTGTATAATAAATTGATTTTTACACTAAAA
3' upstream sequence
CATCTTGCAACTTTTCTTATTTGGTTTAAAGAAACTAAAATGTGGGCCTGTGCAATATTC
CAAGTGGCCTATTATTCAGAGATTATTTACCAATAAAGTGATATATTAGTGATTAATCTT
AGATTCTTAATTCATTTCAACAAGCAGTGGGATGTTAAAGTAACATTATTAATGCAATAC
TTATATACCCAGTTAAACTATCTCAGAAGGAAAAATTAATAGCAATCAGATAAGCAGAGG
CTACAACTATTAGAAACTACTTACTATAAAGAATAAAAATATATCATGATGCACTATATA
TATTATAGTACAGTAACTATACCATAGCACACTACACTATGCAATGGGAGCACAAGTGAC
ATTGGTTACCAATACTCTGGGCACCTGCAGTGTCAGCGGCGATTTCTTCTCAGGAGCTGA
AGCAGGGCCACAGTCTGCTGTTTGTCAGCACAGAGGCTACACTGATCCACCACAATGAAG
ACCCCAAGGCTGGAAGTAGCCTCAATAGTTATGCTCAAAATCTGACCTAAAATTGCTTCC
ATCCCAAGGTAGAAATGGTAAGGGCAAGGGAGTTAGGAAGGCAGGGTCAGGGAAGGGCAG
AAGGAACTTGGAATGAGTGGGGACTAGAGTTTAGGGAGAGGGTGAACATTTTGAAGAGCC
TTTTTTCACTTCATGATTTTTAAGATGTGGTTGGGATAAATCTCATTCAAACTTTGTTTT
TAAAACTAAAAGGCAAGGAGGGGTGACCCATCCCTGCAATCCCAGCACAAAGAAAGCTGA
GGCAGGAAGATGTCTCCGAGTTAAAGCCACTTTAGGATACAGGAGGTTGGTTCCTAGAAA
ATTTGGCTGTCTCCAAAAATACATAATATACCCTATGTTTCTGTGATAAGTTAGCTACTG
CAAATTGAAGTGTTTTGTAATAAACATCTAACGTCTCTTTAACACTCCATTTGAAGAGAA
GCTTCAGCATATATTTTTATTGTTGAAGGCCTTCTTCCAA..........

Sequence Detail Report

Gene Symbol (Gene ID) Elovl2 (ENSMUSG00000021364)
Transcript ID ENSMUST00000021793
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 293 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information