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Target CDS Information

Gene Symbol (Gene ID) Cap2 (ENSMUSG00000021373)
Cross Reference
CCDS CCDS26484.1
EMBL AK010235, AK013331, AK033071, ...show all
Fantom 2310079P22, 2810452G09, 7630403A08, ...show all
GO GO:0000902, GO:0003779, GO:0005515, ...show all
goslim_goa GO:0000902, GO:0003674, GO:0005575, ...show all
MGI_trans_name Cap2-001
OTTP OTTMUSP00000037423
OTTT OTTMUST00000072619
protein_id AAH50752.2, AAH57937.1, BAB26786.1, ...show all
Reactome R-MMU-1266738, R-MMU-376176, R-MMU-422475, ...show all
RefSeq_mRNA NM_026056.4
RefSeq_peptide NP_080332
RefSeq_peptide_predicted XP_006517009.1
UCSC uc007qhf.2
UniParc UPI0000021BB2
Uniprot/SWISSPROT Q9CYT6
Vega_transcript Cap2-001, OTTMUST00000072619
Vega_translation 214408, OTTMUSP00000037423
Definition protein_id:ENSMUSP00000021802
translation:
MTDMAGLMERLERAVIRLEQLSAGLDGPPRGCGEVNGVNGGVAPSVEAFDKLINSMVAEF
LKNSRVLAGDVETHAEMVHGAFQAQRAFLLMVSQYQQPQENEVAVLLKPISEKIQEIQTF
RERNRGSNMFNHLSAVSESIAALGWIAVSPKPGPYVKEMNDAATFYTNRVLKDYKHSDLR
HVDWVRSYLNIWSELQAYIREHHTTGLTWSKTGPVASTASAFSILSSGPGLPPPPPPPPP
PGPPPPFENEDKKEEPSPSRSALFAQLNQGEAITKGLRHVTDDKKTYKNPSLRAQGQIRS
PTKTHTPSPTSPKSNSPQKHTPVLELEGKKWRVEYQEDRNDLVISETELKQVAYIFKCDK
STLQIKGKVNSITVDNCKKFGLVFDHVVGIVEVINSKDIQIQVMGRVPTISINKTEGCHL
YLSEDALDCEIVSAKSSEMNVLVPQDDDYREFPIPEQFKTIWDGSKLVTEPAEIMA

Chromosome 13
Length
Position(start - end)
122,947
46,525,416 - 46,648,364
Orient to Chromosome plus
Link Location : (13:46525416-46648364)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Cap2 (ENSMUSG00000021373)
Transcript ID ENSMUST00000021802
Reports
substitution
cSNPs3
Insertion116
Deletion160
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num3
non-synonymous num0
synonymous substitutions 46530999 (p.Ala48Ala), 46560578 (p.Gln99Gln), 46615262 (p.His181His),
non-synonymous substitutions
B6 transcript
(ENSMUST00000021802)
MTDMAGLMERLERAVIRLEQLSAGLDGPPRGCGEVNGVNGGVAPSVEAFDKLINSMVAEF
LKNSRVLAGDVETHAEMVHGAFQAQRAFLLMVSQYQQPQENEVAVLLKPISEKIQEIQTF
RERNRGSNMFNHLSAVSESIAALGWIAVSPKPGPYVKEMNDAATFYTNRVLKDYKHSDLR
HVDWVRSYLNIWSELQAYIREHHTTGLTWSKTGPVASTASAFSILSSGPGLPPPPPPPPP
PGPPPPFENEDKKEEPSPSRSALFAQLNQGEAITKGLRHVTDDKKTYKNPSLRAQGQIRS
PTKTHTPSPTSPKSNSPQKHTPVLELEGKKWRVEYQEDRNDLVISETELKQVAYIFKCDK
STLQIKGKVNSITVDNCKKFGLVFDHVVGIVEVINSKDIQIQVMGRVPTISINKTEGCHL
YLSEDALDCEIVSAKSSEMNVLVPQDDDYREFPIPEQFKTIWDGSKLVTEPAEIMA*
MSMv4 transcript
MTDMAGLMERLERAVIRLEQLSAGLDGPPRGCGEVNGVNGGVAPSVEAFDKLINSMVAEF
LKNSRVLAGDVETHAEMVHGAFQAQRAFLLMVSQYQQPQENEVAVLLKPISEKIQEIQTF
RERNRGSNMFNHLSAVSESIAALGWIAVSPKPGPYVKEMNDAATFYTNRVLKDYKHSDLR
HVDWVRSYLNIWSELQAYIREHHTTGLTWSKTGPVASTASAFSILSSGPGLPPPPPPPPP
PGPPPPFENEDKKEEPSPSRSALFAQLNQGEAITKGLRHVTDDKKTYKNPSLRAQGQIRS
PTKTHTPSPTSPKSNSPQKHTPVLELEGKKWRVEYQEDRNDLVISETELKQVAYIFKCDK
STLQIKGKVNSITVDNCKKFGLVFDHVVGIVEVINSKDIQIQVMGRVPTISINKTEGCHL
YLSEDALDCEIVSAKSSEMNVLVPQDDDYREFPIPEQFKTIWDGSKLVTEPAEIMA*
homology100.00 (477 / 477)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Cap2 (ENSMUSG00000021373)
Transcript ID ENSMUST00000021802
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........CAACTAAATATTTTATTTTATAAGAGTTGCTGTGGTCGCTGGGCAGTGGT
GGCACACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAG
GCCAGCCTGGTCTGCAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTA
TCGAAGGGAAAAAAAAAAAACGAAAGAAAAGAAAAAGAAAAAGAAAGAGAAAAAGAAAAA
GAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAAAAAAGAGTTGCTGTGGT
CATGGTGTCTGTTCTCTGCAATAAAACCCTAAGACAACAGGGAACATTGGCTTTACCAGA
ATCCCCTTTACTACACAATTTTGAGAGTTTGCTTTTTGAATATCTGTAGGGCCAGGCATA
GTGGATCTGGCCATTAATCCCAGCACTCTGGAAGCAGAGGCCGGAGGATGTCTGTGAGTT
CAAGAACAACCTGTTCTACAGCAAGTCCCAGGGCAGCTAGGACTTTGTAGGGAGACACTT
TCTCAAATTTTAAACAAAAGAACATAAGCTATTACATTTCTCTCTCCCCCTCCCTTCGTC
TGCAGCTTTTCCCCTTGACAATCATTCATTCAGTGAAGAGCTTTGTGTCCAGTATTCCAG
ACTCCCATGAAAATCGAAAATCGATCCTCTCTGTCTAATTATGCTAACCAGAGAGAAACG
CTTCCAGTTTCGTCAGCATAGACCATACATATATAAAATAAGGGGCAGTGTCTACAAGTA
AAACAGTTGCTGGAGTAGGCCGGCCAAGGATTCTACTCGTTTCTAAATAATCAGATGACT
TTTTAAAGTTTCTGTATATAAGTTACTTGCCCCAGATCTACAATCTATCTGAAGAGATAC
ATGCATTTGCTCTCCTTTATCCTTTTCTTTGAGTTGAAGGATATTCGAGGTGCTCCATTC
TCCCTCTCTTTGTGCGGGTCACTATGCAGCCCTACCCACCCCCAACCCAC
1 EXON 1 46,501,848 46,502,211 - - 364
TTCAGGGACCGCCAGACCTTTTCAGAGCTCTTTGCAAACCTGCAGGAGGAGGCGAAGGCA
TTTCCTGCTTGCACCGGCGATCGCCTCTGCCCTCCTATCTCTCTTCTCCCACGGCCCATC
TGTGCCTCCTCTCTGCTCCCTTCCTTGCCACCCCCGCCCTCGGCTGGGTGCTCCCGGCCC
CTCCCGCGCCCGTCTGTATTTGGAGCTGCCGGAAGCCGCGGGCGACTCTCCCCGAGAGCA
GCGTGACCGACTCGGGCTCCCGTGCAGGGGGGAGGCGGAGGCAGCACCGGGCCTGCGGGA
GGAGGGCGCAAGTGGCCGGAGCTGGCTTTGCATCACCGAAGCCAGGACCTGGGCTCTACA
GCAG
INTRON 1 - 2 46,502,212 46,525,414 23,203
GTCAGGCTGGAACGCGGAGGGGGAC..........ATAATCTCCGTCTGTGTCTTTCTAG
2 EXON 2 46,525,415 46,525,536 - 1 122
AATGACAGACATGGCGGGACTGATGGAGAGGCTGGAACGTGCAGTCATCCGGCTGGAGCA
GCTGTCTGCAGGGTTAGACGGACCTCCCAGAGGCTGCGGGGAAGTGAATGGTGTCAATGG
AG
INTRON 2 - 3 46,525,537 46,530,976 5,440
GTAGGGCCACCACCTGATGTCATTA..........GTAACCAAGCCGTTCTCTTCCACAG
3 EXON 3 46,530,977 46,531,077 1 0 101
GTGTGGCACCGTCCGTGGAAGCCTTTGACAAACTGATAAACAGTATGGTGGCCGAGTTCT
TAAAGAACAGCCGAGTCCTTGCTGGTGACGTAGAGACTCAC
INTRON 3 - 4 46,531,078 46,560,503 29,426
GTGAGTGCTTCTTGTCCCTCGGGCA..........CTGCTGCCTTCTTTTCTGTCTGCAG
4 EXON 4 46,560,504 46,560,581 0 0 78
GCAGAAATGGTGCACGGTGCTTTCCAAGCCCAGCGTGCTTTTCTTCTCATGGTCTCGCAG
TACCAACAACCCCAGGAG
INTRON 4 - 5 46,560,582 46,609,595 49,014
GTAAGAGCAGCTTGTAATAAACAGG..........TAACCGATCCAATGTTTGCCCCTAG
5 EXON 5 46,609,596 46,609,739 0 0 144
AATGAAGTTGCTGTCCTTCTGAAGCCCATATCGGAGAAGATTCAAGAAATACAGACTTTC
CGAGAGAGAAACCGGGGAAGCAACATGTTCAACCACCTCTCGGCAGTCAGTGAAAGCATC
GCCGCCCTGGGCTGGATAGCCGTG
INTRON 5 - 6 46,609,740 46,610,063 324
GTGAGTTACGACAGAATGCCGCGCA..........TTGGGTGATGGGCCTGTTTTCTCAG
6 EXON 6 46,610,064 46,610,149 0 2 86
TCCCCCAAACCTGGTCCTTATGTCAAGGAGATGAACGACGCTGCCACCTTTTACACAAAC
AGGGTCCTGAAAGACTACAAGCACAG
INTRON 6 - 7 46,610,150 46,615,249 5,100
GTATGTATTCCCTCTCCCAGCTGGG..........CTCTCCTCCGCTCTCTGTGATGAAG
7 EXON 7 46,615,250 46,615,355 2 0 106
CGATCTGCGCCATGTGGATTGGGTGAGGTCCTACCTCAACATCTGGAGCGAGCTGCAAGC
CTACATCAGGGAACACCACACCACAGGCCTCACTTGGAGCAAAACA
INTRON 7 - 8 46,615,356 46,635,620 20,265
GTAAGTACCACGCCCTCTCTGACCT..........AGCTCCCATCTTCTGTCTCCCACAG
8 EXON 8 46,635,621 46,635,810 0 1 190
GGTCCTGTGGCATCCACAGCGTCAGCGTTTTCCATCCTCTCCTCTGGGCCTGGTCTCCCG
CCACCACCTCCACCACCACCTCCTCCTGGGCCACCTCCACCCTTTGAGAATGAGGATAAA
AAGGAGGAGCCCTCCCCTTCTCGCTCAGCTTTATTTGCCCAGCTCAATCAAGGAGAAGCC
ATCACTAAAG
INTRON 8 - 9 46,635,811 46,637,848 2,038
GTAAGAAAACAAATCCTGGAAACTG..........AATTAAAACTGCCCTGCCTTCCTAG
9 EXON 9 46,637,849 46,638,021 1 0 173
GGCTCCGGCATGTCACAGATGACAAGAAGACATACAAGAATCCCAGCCTGAGGGCTCAAG
GACAGATTCGCTCTCCAACCAAAACTCACACGCCGAGCCCCACATCTCCAAAATCGAATT
CTCCTCAGAAACATACTCCAGTGTTGGAGCTGGAAGGGAAGAAGTGGAGAGTG
INTRON 9 - 10 46,638,022 46,639,822 1,801
GTAAGTATAATCCTGTGACATGATT..........ATGCCCATGTCTGTTTTACCTTTAG
10 EXON 10 46,639,823 46,639,946 0 1 124
GAATACCAAGAGGACAGGAATGACCTTGTCATCTCCGAGACCGAGCTGAAACAAGTGGCT
TACATTTTCAAATGTGACAAATCCACTCTTCAGATAAAGGGAAAAGTGAACTCCATCACT
GTCG
INTRON 10 - 11 46,639,947 46,640,039 93
GTAGGCAAAGCTTAGGCTGTGTGCT..........CCAGAGCTTCGTTCTCCTCTTTTAG
11 EXON 11 46,640,040 46,640,122 1 0 83
ATAACTGCAAGAAGTTTGGCCTGGTGTTTGATCATGTGGTGGGCATTGTGGAAGTGATCA
ACTCCAAGGACATTCAGATCCAG
INTRON 11 - 12 46,640,123 46,646,525 6,403
GTGAGCAGCCTCTAGGGACCATGCT..........CTTCAGTCCCATTTTTTCCCCTTAG
12 EXON 12 46,646,526 46,646,666 0 0 141
GTAATGGGGAGAGTACCAACAATCTCCATTAATAAGACAGAAGGATGCCACCTGTACCTC
AGTGAAGATGCACTAGACTGTGAGATCGTGAGCGCGAAGTCGTCCGAGATGAATGTCCTG
GTCCCTCAGGATGACGATTAT
INTRON 12 - 13 46,646,667 46,648,280 1,614
GTGAGTACCTCCCAAAAGCCTGCCC..........AACTGTCTTTCTCAACTTCTTCCAG
13 EXON 13 46,648,281 46,649,642 0 - 1,362
AGAGAATTCCCCATTCCCGAGCAGTTCAAGACAATATGGGATGGCTCCAAGCTGGTCACC
GAACCTGCAGAGATCATGGCCTGACATCCAAGAGATAGCCTTCCCTGAGTCTCCTCTAGC
GAACAGAAGCAAGCAGCTAATAGGAGCTAGATTTTACCATAGCCCCGACGCCCGTGTCCG
TGTCCGAATCCTGCAGTTCTGTGCCATGGAAAACAGTATCTTTTCTGGCAGGCTTTTATG
GGCGTTTTGAAATATTTAACATTTGATCATGATTTGTGTGTGATTTTACTTCCACGTGAT
AACTAGTAAACACGGCAGTTAAAGGGAAAAGAATTCTGTTCCCATCACACCACCAACTCC
GTAACTGATAAGGAAAAGCCCTGCCTATTTCTTCCTTTCAGTTTAATTGCTAGTTGAAAA
AAAAAAATGAAGCCTTAGAGAACCTATGTATGTTTTTACCTTTTAGACAACTTTAAAATA
GTCTTGTGCCCTAAAGAATAAGGCTCTATTTTTTAATTTTTACGTGCTCCCCTTTATCAG
CATGGATATCCTGTCAGCATGAATGAATTCTTCAATCCATGCTTTTACACACACATATAC
ACAAAGAGAAAACATCTAAGGAAACACAATATACCCTTTATAGTTACTGAAAAACAAAAG
AAATCCTAACTCCATCTTTCTCATGAGTCACTTTAAAAGTTCTAATTTGCCTGCATATCC
TAAGACAAAGGGTGGTGGCAGGGAGGGGTGGGGTGTGGTAGGGACTCAGTCCTCAGTTTG
TGCTTTGTAATACCTCATGGTCTGGTTTGAAGGATAACTCGGCCTTTGCGTTGCAGTTTT
GAAGTCACCCATACTATCAGACAACCCCATACAGGTCTCAAATGCTTATTAGAGATGAGT
CCCTTTTCCGATGGCCAGGCTAACCAGTGCTAACCAGCCTCAAAGACAAAAATGCCCAAG
AGCCTGACTTTTGCTTCTCGAATCAGTTTTTTGGCTCTGGTTGGGTTTTCTAGTCTTAAT
AGTACACAGACTTCCAGGCGAGCAACAACACTCTTCGTGTCTCTTCTCTGCACGTGGCCG
AGAACTCTGCAGCTTTTTGGGTCCTGTGTAACGAAGCATAGCGCTAAGCTTTTGGAACCA
GTGGGAGCATCTAGATTGTGCCTACGAAGACCCTGCTGGCTATCGTTTTTTCAGTTTTCT
AATAGCTTCTATATCCATACAGTATTCATATCACTGATGTTTGTGTATCAAAGTTTTGCT
ATAAAAGTTCTGTCCTTATGAACTATATGGTGGCTTTAGTAAGTATAATTTTTTGAACAG
TAAAGTTATACCAAGTAAAACCAAATTGTTTAAATACTGAGA
3' upstream sequence
TGAATTCTCATTTTGGTTTTGCATTTGTTTTGCCCTGTTTTATCTTTCACTTGCTGCTTG
TTGATTTGTTTGCGGTCAGCCAGAGATACAAAGTGAGACACTATTGGAGGTAGTTAATGC
CGAGCCTGACAACTTGAGTGTGATCTCCAGGAACCACGTGGTGGAAGGAGAGAAGTGACC
TACACAAGACGTCCTCTGACCTGTACATACACATCATCACATCATGAATGCACATGCCAG
TGCGCACGCGCGCGCACACACACACACACACACACACACACACAAGTTTTTTTTAAAAAC
TTTAAATTTAAAAAAAATAAAAGTCAAAATGGAGCTGGAGACATGGCAGCAGTTAGGAGC
TCGGCCGTTCTTGTAGAGAACCCACCCATGTTCAAGTCCATCACCCACCTGACAGCTCAT
AACCTCCTGTAACTCCAGTTCCAAGGAATCTAACATCCTCCTGGGCACCTGCATGCATGT
GGTGCACCTGCGCACTCGGTCACGCACATACACATTCAGTTGTACTTTAACAGTCAAAAT
GAAAATTGCCATCACATTATATTACATATTTGCATTATAGTGGCCTTATGTAACCAGGGT
TGTTTTTTTTTTTTTTTTTAATTAAAAAATAAAACTAGAGCTTTTTTTTGTTGTCAATAT
TAAAAACCTGGTAAGGGGGCTGGAGAGGTGGCTCAGCGGTTAAAAGCACTGACTGCTCTT
CCAGAGGTCCTGAGTTCAATTCCCAGCAAACACATGGTGGCTCACAACCATCTGTAATGG
GATCTGACACCCTCTTCTGGTGTGTCTGAAGACAGCAACAGTGTACTCACATAAATAAAA
TAAATAAATCTTTTTTTAAAATAAAATAAAATAAAAAATAGAACCAGAAGGAAAGAAAAT
AAGCTGCAGAAAGTCAAGTGCCACGGGCTCCCATGTCTCTTTAGTATTTTTGGATGAAAA
TGAAATCCCAGAGGCAGTCTTTGCTGTAAATCCTCTCCTA..........

Sequence Detail Report

Gene Symbol (Gene ID) Cap2 (ENSMUSG00000021373)
Transcript ID ENSMUST00000021802
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 477 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information