MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Susd3 (ENSMUSG00000021384)

Cross Reference

CCDS	CCDS56880.1
EMBL	AK003860, AK006068, AK013276, ...show all
Fantom	1110020G21, 1700017I11, 2810440J20
GO	GO:0003674, GO:0005575, GO:0005886, ...show all
goslim_goa	GO:0003674, GO:0005575, GO:0005623, ...show all
MGI_trans_name	Susd3-002
OTTP	OTTMUSP00000034656
OTTT	OTTMUST00000068502
protein_id	AAH45525.1, BAB23043.1, BAB24394.1, ...show all
RefSeq_mRNA	NM_028340.1

RefSeq_peptide	NP_082616
UCSC	uc007qja.2
UniParc	UPI000000B883
Uniprot/SWISSPROT	Q9D176
Vega_transcript	OTTMUST00000068502, Susd3-002
Vega_translation	214440, OTTMUSP00000034656

Definition

protein_id:ENSMUSP00000021816
translation:

MRRLSLSKVTCLALESKGTCAQLHPPPQGTLQVVRGDGTSLGTVLIFHCPSGHQMVGSGL
LTCAWNGSTVDWSSGSPVCKAVPPHETFGFKVAVIASIVSCAIILLMSMAFLTCCLLKCV
QKNERRRADRTAQLWYQLRGEDLETVQAAYLGLKGHNHNNSSSVGGGNGGPSGGGGKPGI
QHSQAHDNHSFTTDPGDIREQAGVTHSVDKDPWTFRMGTPGPGGCSSSPGTYVMVHALNS
AGLAPGNPGRPKVYLPG

Chromosome

Length
Position(start - end)

17,333
49,231,136 - 49,248,470

Orient to Chromosome

minus

Link

Location : (13:49231136-49248470)
/

Detail Map

name	Susd3 (ENSMUSG00000021384)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Susd3 note : sushi domain containing 3 [Source:MGI Symbol;Acc:MGI:1913579]

name	Susd3 (ENSMUSG00000021384)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000058196

name	Susd3 (ENSMUSG00000021384)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000021816

name	Susd3 (ENSMUSG00000021384)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000135784

name	Susd3 (ENSMUSG00000021384)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000119721

name	Susd3 (ENSMUSG00000021384) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS26498.1 Uniprot/SWISSPROT:Q9D176 RefSeq_peptide:NP_079767 RefSeq_mRNA:NM_025491.3 Vega_transcript:OTTMUST00000068501 Vega_transcript:Susd3-001 UCSC:uc007qiz.2 Fantom:1110020G21 Fantom:1700017I11 Fantom:2810440J20 EMBL:AK003860 EMBL:AK006068 EMBL:AK013276 EMBL:BC045525 GO:GO:0003674 GO:GO:0005575 GO:GO:0005886 GO:GO:0005886 GO:GO:0008150 GO:GO:0016021 MGI_trans_name:Susd3-001 Vega_translation:214439 Vega_translation:OTTMUSP00000034655 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005623 goslim_goa:GO:0005886 goslim_goa:GO:0008150 protein_id:AAH45525.1 protein_id:BAB23043.1 protein_id:BAB24394.1 protein_id:BAB28764.1 OTTP:OTTMUSP00000034655 OTTT:OTTMUST00000068501 UniParc:UPI0000021BBD
definition	note : transcript_id=ENSMUST00000058196 protein_id : ENSMUSP00000061423 translation : MRRTSATLRGRARPRWRAGNTTPVPVNQTGTCAQLHPPPQGTLQVVRGDGTSLGTVLIFHCPSGHQMVGSGLLTCAWNGSTVDWSSGSPVCKAVPPHETFGFKVAVIASIVSCAIILLMSMAFLTCCLLKCVQKNERRRADRTAQLWYQLRGEDLETVQAAYLGLKGHNHNNSSSVGGGNGGPSGGGGKPGIQHSQAHDNHSFTTDPGDIREQAGVTHSVDKDPWTFRMGTPGPGGCSSSPGTYVMVHALNSAGLAPGNPGRPKVYLPG

name	Susd3 (ENSMUSG00000021384) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS56880.1 Uniprot/SWISSPROT:Q9D176 RefSeq_peptide:NP_082616 RefSeq_mRNA:NM_028340.1 Vega_transcript:OTTMUST00000068502 Vega_transcript:Susd3-002 UCSC:uc007qja.2 Fantom:1110020G21 Fantom:1700017I11 Fantom:2810440J20 EMBL:AK003860 EMBL:AK006068 EMBL:AK013276 EMBL:BC045525 GO:GO:0003674 GO:GO:0005575 GO:GO:0005886 GO:GO:0008150 GO:GO:0016021 MGI_trans_name:Susd3-002 Vega_translation:214440 Vega_translation:OTTMUSP00000034656 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005623 goslim_goa:GO:0005886 goslim_goa:GO:0008150 protein_id:AAH45525.1 protein_id:BAB23043.1 protein_id:BAB24394.1 protein_id:BAB28764.1 OTTP:OTTMUSP00000034656 OTTT:OTTMUST00000068502 UniParc:UPI000000B883
definition	note : transcript_id=ENSMUST00000021816 protein_id : ENSMUSP00000021816 translation : MRRLSLSKVTCLALESKGTCAQLHPPPQGTLQVVRGDGTSLGTVLIFHCPSGHQMVGSGLLTCAWNGSTVDWSSGSPVCKAVPPHETFGFKVAVIASIVSCAIILLMSMAFLTCCLLKCVQKNERRRADRTAQLWYQLRGEDLETVQAAYLGLKGHNHNNSSSVGGGNGGPSGGGGKPGIQHSQAHDNHSFTTDPGDIREQAGVTHSVDKDPWTFRMGTPGPGGCSSSPGTYVMVHALNSAGLAPGNPGRPKVYLPG

name	Susd3 (ENSMUSG00000021384) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000068518 Vega_transcript:Susd3-004 Uniprot/SPTREMBL:D3YY27 UCSC:uc007qja.2 EMBL:AC140284 GO:GO:0003674 GO:GO:0005575 GO:GO:0008150 MGI_trans_name:Susd3-004 Vega_translation:214442 Vega_translation:OTTMUSP00000034669 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 OTTP:OTTMUSP00000034669 OTTT:OTTMUST00000068518 UniParc:UPI0001611549
definition	note : transcript_id=ENSMUST00000135784 protein_id : ENSMUSP00000115888 translation : MRRLSLSKVTCLALESKAVPPHETFGFKVAVIASIVSCAIILLMSMAFLTCCLLKCVQKNERRRADRTAQLWYQLRGEDLETVQAAYLGLKGHNHNNSSSVGGGNGGPSGGGGKPGIQHSQAHDNHSFTTDPGDIREQA

name	Susd3 (ENSMUSG00000021384) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SWISSPROT:Q9D176 Vega_transcript:OTTMUST00000068503 Vega_transcript:Susd3-003 UCSC:uc007qjb.1 Fantom:1110020G21 Fantom:1700017I11 Fantom:2810440J20 EMBL:AK003860 EMBL:AK006068 EMBL:AK013276 EMBL:BC045525 GO:GO:0003674 GO:GO:0005575 GO:GO:0005886 GO:GO:0008150 GO:GO:0016021 MGI_trans_name:Susd3-003 Vega_translation:214441 Vega_translation:OTTMUSP00000034657 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005623 goslim_goa:GO:0005886 goslim_goa:GO:0008150 protein_id:AAH45525.1 protein_id:BAB23043.1 protein_id:BAB24394.1 protein_id:BAB28764.1 OTTP:OTTMUSP00000034657 OTTT:OTTMUST00000068503 UniParc:UPI0000027635
definition	note : transcript_id=ENSMUST00000119721 protein_id : ENSMUSP00000113631 translation : MRRTSATLRGRARPRWRAGNTTPVPVNQTGTCAQLHPPPQGTLQVVRGDGTSLGTVLIFHCPSGHQMVGSGLLTCAWNGSTVDWSSGSPVCKAVPPHETFGFKVAVIASIVSCAIILLMSMAFLTCCLLKCVQKNERRRADRYSGLMSFQKLCLAVRLLITSCQVPWGSV

name
type	misc_feature
link
xref
definition	note : contig AC140284.3 45990..186444(1)

name	Susd3 (ENSMUSG00000021384)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000068520 Vega_transcript:OTTMUST00000068520 MGI_trans_name:Susd3-006 OTTT:OTTMUST00000068520
definition	note : processed_transcript note : transcript_id=ENSMUST00000141408

name	Susd3 (ENSMUSG00000021384)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000068519 Vega_transcript:OTTMUST00000068519 MGI_trans_name:Susd3-005 OTTT:OTTMUST00000068519
definition	note : processed_transcript note : transcript_id=ENSMUST00000131880

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Susd3 (ENSMUSG00000021384)
Transcript ID	ENSMUST00000021816

Reports
substitution
cSNPs	5
Insertion	14
Deletion	19
SNPs	+1kb 49249311(c.-841A>G), 49249864(c.-1394G>A), 49250629(c.-2159T>G), 49250686(c.-2216T>C), 49250698(c.-2228A>G), 49250752(c.-2282T>A), 49250972(c.-2502G>T), 49251054(c.-2584G>T), 49251140(c.-2670A>G), 49251551(c.-3081A>G), 49251653(c.-3183G>A), 49251718(c.-3248C>G), 49251769(c.-3299A>G), 49251808(c.-3338G>T), 49251828(c.-3358G>A), 49252700(c.-4230G>A), 49252714(c.-4244A>C), 49252753(c.-4283A>T), 49252972(c.-4502G>A), 49253040(c.-4570G>T), 49253053(c.-4583C>T), 49253139(c.-4669C>T), 49253157(c.-4687G>A), 49253195(c.-4725T>G), 49253529(c.-5059G>T), 49253582(c.-5112A>G), 5'UTR CDS 49231198(c.712T>A), 49237603(c.399A>G), 49238812(c.366A>G), 49238818(c.360G>A), 49240515(c.209T>C), 3'UTR 49230872(c.264A>G), 49230912(c.224T>C), 49231016(c.120T>C), INTRON 49231622(c.579-291A>T), 49231977(c.579-646G>C), 49232391(c.579-1060A>G), 49232516(c.579-1185T>C), 49232521(c.579-1190C>A), 49232556(c.579-1225A>G), 49232562(c.579-1231A>G), 49232731(c.579-1400C>G), 49232740(c.579-1409A>G), 49233019(c.579-1688A>G), 49233022(c.579-1691G>A), 49233092(c.579-1761C>T), 49233177(c.579-1846T>C), 49233254(c.579-1923T>G), 49233277(c.579-1946G>A), 49233284(c.579-1953G>A), 49233312(c.579-1981G>A), 49233422(c.579-2091G>A), 49233612(c.579-2281A>G), 49233695(c.579-2364G>C), 49233699(c.579-2368C>T), 49233848(c.579-2517C>T), 49234009(c.579-2678C>T), 49234046(c.579-2715G>A), 49234131(c.579-2800G>A), 49234245(c.579-2914A>T), 49234271(c.579-2940C>T), 49234372(c.579-3041T>A), 49234505(c.578+2919C>G), 49234509(c.578+2915A>G), 49234568(c.578+2856A>G), 49234598(c.578+2826C>T), 49234637(c.578+2787G>A), 49234647(c.578+2777G>T), 49234977(c.578+2447T>C), 49235220(c.578+2204A>G), 49235266(c.578+2158C>T), 49235450(c.578+1974A>G), 49236045(c.578+1379C>T), 49236346(c.578+1078C>T), 49236394(c.578+1030G>A), 49236395(c.578+1029T>C), 49237702(c.390-90C>T), 49237736(c.390-124A>G), 49237741(c.390-129C>T), 49237801(c.390-189C>T), 49237868(c.390-256G>A), 49238125(c.390-513G>T), 49238168(c.390-556C>T), 49238528(c.389+261T>C), 49238589(c.389+200G>T), 49238612(c.389+177G>A), 49238633(c.389+156C>T), 49238956(c.242-20G>T), 49239037(c.242-101C>T), 49239039(c.242-103G>A), 49239133(c.242-197C>T), 49239165(c.242-229A>G), 49239215(c.242-279T>C), 49239651(c.242-715A>G), 49239658(c.242-722G>C), 49239717(c.241+766C>A), 49239777(c.241+706G>A), 49239796(c.241+687A>G), 49239820(c.241+663C>T), 49239863(c.241+620A>C), 49239869(c.241+614A>G), 49239938(c.241+545A>G), 49240110(c.241+373T>G), 49240291(c.241+192C>T), 49240312(c.241+171C>G), 49240329(c.241+154C>T), 49240747(c.53-76T>G), 49240866(c.53-195T>A), 49240885(c.53-214T>C), 49241110(c.53-439A>C), 49241115(c.53-444G>A), 49241138(c.53-467T>C), 49241153(c.53-482G>A), 49241232(c.53-561G>A), 49241261(c.53-590T>A), 49241309(c.53-638C>A), 49241371(c.53-700C>G), 49241438(c.53-767A>G), 49241454(c.53-783T>C), 49241517(c.53-846G>T), 49241547(c.53-876A>T), 49241573(c.53-902C>T), 49241707(c.53-1036C>T), 49241738(c.53-1067T>C), 49241828(c.53-1157C>T), 49241863(c.53-1192G>T), 49241885(c.53-1214G>A), 49242046(c.53-1375G>A), 49242076(c.53-1405A>G), 49242136(c.53-1465T>C), 49242173(c.53-1502C>T), 49242189(c.53-1518G>A), 49242503(c.53-1832G>A), 49242538(c.53-1867A>G), 49242832(c.53-2161T>C), 49242954(c.53-2283G>A), 49243137(c.53-2466T>C), 49243151(c.53-2480A>G), 49243386(c.53-2715C>T), 49243636(c.53-2965A>G), 49244545(c.52+3874A>G), 49244992(c.52+3427G>A), 49244998(c.52+3421A>G), 49245281(c.52+3138G>A), 49245323(c.52+3096T>C), 49245579(c.52+2840C>A), 49245912(c.52+2507G>A), 49246075(c.52+2344G>A), 49246102(c.52+2317A>G), 49246173(c.52+2246G>A), 49246209(c.52+2210T>C), 49246332(c.52+2087A>G), 49246483(c.52+1936G>A), 49246609(c.52+1810G>T), 49246705(c.52+1714T>C), 49246837(c.52+1582T>G), 49247003(c.52+1416G>A), 49247054(c.52+1365G>A), 49247081(c.52+1338C>G), 49247293(c.52+1126G>T), 49248390(c.52+29A>C), -1kb 49225838(c.5298G>T), 49225859(c.5277T>A), 49225900(c.5236A>C), 49226194(c.4942C>T), 49226290(c.4846A>T), 49226305(c.4831C>T), 49226478(c.4658C>T), 49226486(c.4650C>T), 49226531(c.4605G>T), 49226537(c.4599G>A), 49226575(c.4561T>C), 49226584(c.4552A>G), 49226663(c.4473C>T), 49226757(c.4379A>G), 49226875(c.4261C>T), 49227002(c.4134G>T), 49227024(c.4112A>G), 49227052(c.4084A>C), 49227105(c.4031G>A), 49227107(c.4029C>T), 49227339(c.3797G>A), 49227350(c.3786C>T), 49227358(c.3778G>A), 49227434(c.3702C>T), 49227574(c.3562C>T), 49227641(c.3495C>A), 49228066(c.3070A>G), 49228153(c.2983C>T), 49228158(c.2978A>T), 49228264(c.2872A>T), 49228268(c.2868A>G), 49228270(c.2866A>G), 49228272(c.2864A>G), 49228274(c.2862A>G), 49228553(c.2583C>A), 49228562(c.2574T>C), 49229163(c.1973A>G), 49229184(c.1952G>A), 49229492(c.1644G>A), 49230094(c.1042T>C), 49230118(c.1018G>A), 49230188(c.948T>C), 49230245(c.891G>T),
Insertions	+1kb 49253208 (c.-4739_-4738insTTGG), 49253609 (c.-5140_-5139insTT), 5'UTR CDS 3'UTR INTRON 49234273 (c.579-2944_579-2943dupCT), 49236844 (c.578+579_578+580insTCCTT), 49242040 (c.53-1370_53-1369insG), 49242256 (c.53-1586_53-1585insTCTT), 49243009 (c.53-2339_53-2338insC), 49243778 (c.53-3108dupC), 49245126 (c.52+3292dupT), 49245128 (c.52+3290dupT), 49245655 (c.52+2763_52+2764insTGC), -1kb 49227960 (c.3175_3176insG), 49228286 (c.2849_2850insTGG), 49230302 (c.833_834insCTCCC),
Deletions	+1kb 49248856 (c.-392_-387delAGGGGG), 49249252 (c.-783delT), 49249518 (c.-1055_-1049delTTGGGGG), 49250243 (c.-1782_-1774delCCTCCTCCT), 49250986 (c.-2517delC), 49253644 (c.-5176_-5175delGG), 5'UTR CDS 3'UTR INTRON 49234814 (c.578+2609delT), 49235096 (c.578+2326_578+2327delCA), 49237905 (c.390-299_390-294delTTTTTT), 49239080 (c.242-148_242-145delAATA), 49241535 (c.53-866_53-865delCT), 49241853 (c.53-1190_53-1183delGGGGTGGG), 49243115 (c.53-2453_53-2445delCCCCCCCCC), 49244105 (c.53-3440_53-3435delGTGTGT), 49245047 (c.52+3364_52+3371delAAACAAAC), 49245078 (c.52+3337_52+3340delCACT), 49245829 (c.52+2588_52+2589delGA), -1kb 49227226 (c.3906_3909delACTG), 49227484 (c.*3651delG),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	3
non-synonymous num	2
synonymous substitutions	49237603 (p.Gln133Gln), 49238812 (p.Lys122Lys), 49238818 (p.Val120Val),
non-synonymous substitutions	49231198 (p.Leu238Met), 49240515 (p.Val70Ala),
B6 transcript (ENSMUST00000021816)	MRRLSLSKVTCLALESKGTCAQLHPPPQGTLQVVRGDGTSLGTVLIFHCPSGHQMVGSGL LTCAWNGSTVDWSSGSPVCKAVPPHETFGFKVAVIASIVSCAIILLMSMAFLTCCLLKCV QKNERRRADRTAQLWYQLRGEDLETVQAAYLGLKGHNHNNSSSVGGGNGGPSGGGGKPGI QHSQAHDNHSFTTDPGDIREQAGVTHSVDKDPWTFRMGTPGPGGCSSSPGTYVMVHALNS AGLAPGNPGRPKVYLPG*
MSMv4 transcript	MRRLSLSKVTCLALESKGTCAQLHPPPQGTLQVVRGDGTSLGTVLIFHCPSGHQMVGSGL LTCAWNGSTADWSSGSPVCKAVPPHETFGFKVAVIASIVSCAIILLMSMAFLTCCLLKCV QKNERRRADRTAQLWYQLRGEDLETVQAAYLGLKGHNHNNSSSVGGGNGGPSGGGGKPGI QHSQAHDNHSFTTDPGDIREQAGVTHSVDKDPWTFRMGTPGPGGCSSSPGTYVMVHAMNS AGLAPGNPGRPKVYLPG*
homology	99.22 (258 / 258)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Susd3 (ENSMUSG00000021384)
Transcript ID	ENSMUST00000021816


..........CCATCATTTCTGAACCCGAGGTGGGTGGAGGTGGGTGCTAGTTGTTGATG
AGCTGACTCACCCTGGATGGTAGAACTGCAAAGTGGTCAGATCCCAGGCATATAACCAAC
TCCTCTCCTCCCCTCTAACCTACCATCAGGAAGTTAATCCTTGTGCTTTCCCATGGACAG
CTCTTTTTTTTTTGGGGGGGGGGGGAGGGAGTTTTTTTCGAGGCAGGGTTTCTCTGTGTA
GCCCTGGCTGTCCTGGCACTCACTTTGTAGACCAGGCTGGCCTGAAACTCAGAAATCTGC
CTGCCTCTGCCTCTGCCTCCCAAATGCTGGGATTAAAGGCGTGCGCCACCACCGCCCCGG
CGCCCTGTACAGCTCTTATCTGAACCTTTTACCCATCGACAATGGGATGTTAGGGCTTGA
GTCATTGTGAAAGGTTTTGGGGGTGAAATTCTCATTTTTTTTTTCTATTGAGTAGAGACT
AAAGAACCAAGAAAACAAGAGCTGGAAGGATAGCTCAGCAGTAAAGAGCACCTGCTGTTC
TTGCATGTGATCTGAGTTTGGTTTCCAGCACCCACATGGTGACACACAGCCAACCACTGG
CATGCAGAAGGCACACATACATGCAGGCCAACCGTTCATGCATAAAAGTAAAATAAATCT
AAAGAAAAAAAGGATGCTCCCTGGAGACTTTGAAGAGCTCTGGCCCCACCTCCTGTATGA
TGAGACAACGTGGATCTGTGGTTCTGTGGAGTTCTATCTGTAGTGCTTTGTTCTGTAAGC
CTAGGAAACATCCCCACCCTAAATAACTGTTGGTCAGCGCTGCTGAACATTGGGGGAGGG
GGAGGGGGAGGGGGAGGGGGGAGGGGCGGCACTGAGCCACACGATGGTGGTAGGTGCCTC
CCCCCCCCCACGTCCTTCACAGCTTCTACCCACAAATCAAGGACACTTTAAATCCCTCTA
AGTCCCATCCCTGAGCCTCCAGGCAGCTGCTCTCCACTGGCAGACAGGGA
TCTCTGGCTATGTGGCCAGGAATTCTGATATCTCAGAGTATGGTGGGGGTGGGGTAGGAGAGGGGTTGGTATCACAGTGGGGTCTGTGGATGGACCTGCCTTTCACGATGCAGCAGACCGGACATAAGCTTGATTTCAACTTTAGGACATTAAAGAAAGTCACATCACGCGTGACTCGCAAGTTCAAGTGAAAAGGAGACATTAGGGGGTGCTACCAACCCTGACTCCAGAAGAGAATGAGGAGGCTGTCACTCTCCAAGGTCACCTGCCTGGCCCTAGAGTCCAAAG
GTGAGTCGGGAGAGGAAGGGTGTGC..........GCCTCACAGCCTCTTCTCTGTCCAG
GCACCTGTGCTCAGCTCCATCCCCCGCCTCAAGGCACCTTGCAAGTCGTCCGTGGAGATGGCACATCTCTGGGGACTGTGCTCATATTCCACTGCCCCTCTGGCCACCAGATGGTGGGGTCTGGCCTCCTCACTTGTGCCTGGAATGGGAGCACCGCTGACTGGTCTTCAGGAAGCCCTGTGTGCAAAG
GTAGGCCCCTCCTCCTTCCTGAGCT..........GAGCTTTGGTTTTTTTCCCTTGCAG
CTGTGCCACCGCATGAGACCTTCGGCTTTAAGGTGGCAGTGATCGCCTCCATTGTGAGCTGTGCCATCATCCTGCTCATGTCCATGGCCTTCCTCACCTGCTGCCTCCTCAAGTGTGTACAGAAGAATGAGCGGCGGCGTGCTGACAG
GTACAGTGGCCTCATGTCCTTCCAG..........CTTCATCCTGAGCTCTCTCCTCCAG
GACGGCACAGCTCTGGTACCAGCTGAGAGGCGAGGACCTGGAGACGGTACAAGCTGCCTACTTGGGCCTCAAGGGACACAACCACAATAACAGCAGCAGCGTCGGTGGTGGCAATGGTGGCCCCAGTGGTGGTGGCGGCAAGCCAGGAATTCAGCACAGCCAGGCCCATGACAACCACAGCTTCACCAC
GTAGGTTACCCTAGTCCTAAGGTGG..........CAGCTTATGCCTCTTCTTCCCACAG
AGACCCTGGTGACATCAGAGAGCAGGCTGGTGTGACCCACAGTGTGGACAAAGACCCTTGGACTTTCAGGATGGGAACTCCGGGCCCTGGTGGCTGCTCCAGCTCGCCAGGCACCTACGTGATGGTCCACGCGATGAACTCTGCAGGGCTGGCCCCTGGAAATCCTGGGAGGCCCAAAGTGTACCTTCCAGGGTGACCCCACTAGCCAGAGGTCTGCAAGTCAACGTTTGCCCAGCTGGACATGGGCCAGGGCAGTCACCTCCAGGCATAGGGGGCCATCGGGAGCCTAGCTGACATTAAAGGCTGGGGCCCCAGCGGGGAGCAGTCTTTTCTAGAGGTCTCCTCTGTGGCTGTTACAGGACCTGCTCAATGAACTGCTACTGGGGTGATGTCCCGAAGAAGTCACCACAACCAGGGTTCTTTTAGAGAGATTGAGACATTTTAAACAGATATAGTTTTGCATAGTAGACTATGAAAATATTAATAAAGTACTTTCAGCAAAA
CAGGTAGCCACCTTATCATCTTCTGGGGCATGGACGCCCCGCCTGGAAGCCAGGACCCCC
AGAACTTCATCTGTCAACTGTGGTGAGAGAAATGGATGTGTTTTCTTTGCATAAAAACAT
AAAGTGGGGTTGGAAGTGCACCTCGGTTGGCAGAATGCTTGTGTATCTTGCAGAACAAGG
CTTCAATCCCCAGCACCGTACAAACCTATAATCCCAGTGCTTGGAAGGTAGCAGGAGGAG
GAGGAGGATATGAATTTCAGGGTCATCCTGGGCTATGGGAAACCCTGTCGAAATAAATGA
ATTATAAACTCACTTTAAGGTAGAAACCACTGTCCCAGTTGGCCATCCCATCAAATCCTC
GAATCCAGTTGTTATAAAACCAGTCACATATTATCACCCCATGGAGCCCTGAGCTTGTTG
GAGAGATGGGAGTCACTGAGCTCTGGTTACTCACAGGTCTGTGTTTGCTGCTGGCAGTCA
GTGGAGACCTTCTGAAGCCTTAGTGGGAATAGTCTGCCTTCCACAGCCCCCCACCCCACC
CCAGTATCTGCATAGCCTGGAGGCTGATTTCCAAGGTGAGATGTGATGTGAGTTCCAGAT
GGGAGCTGTTGCTTTACAGTCTTTTGCCTTGAAAGTCTCTCCCCCCCCCCCCATATTCTA
TTCATCAGGAAACCCCAGCTGGGCTTCACTGGTGTGGGAAAGCAGAAGTGACAGACATAT
TTTAAAGCCATCTGCTGGGTTTACAATCATAGTCCTAGCCACTCGTGAGGCTAAGGTAAA
AAGATCACTTTTGAGCTGGAGGCTAGCCTACATAGCAAGACACCCCTCCCCCCCATCTCA
AACAAACGAAAAAACCCAACCTAAACCCCACCGCAGCTCAGTGGTAGAACCCTTACCTAA
CATCATGTGGCTGGGAGTTCAATCTCCAAGTCAAAGCTATCACAGTCATCTGGAAGCCAG
CAACTTGTCAAATCAGATCTATAAACGCCAGCCCTGCCAG..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........CCATCATTTCTGAACCCGAGGTGGGTGGAGGTGGGTGCTAGTTGTTGATG AGCTGACTCACCCTGGATGGTAGAACTGCAAAGTGGTCAGATCCCAGGCATATAACCAAC TCCTCTCCTCCCCTCTAACCTACCATCAGGAAGTTAATCCTTGTGCTTTCCCATGGACAG CTCTTTTTTTTTTGGGGGGGGGGGGAGGGAGTTTTTTTCGAGGCAGGGTTTCTCTGTGTA GCCCTGGCTGTCCTGGCACTCACTTTGTAGACCAGGCTGGCCTGAAACTCAGAAATCTGC CTGCCTCTGCCTCTGCCTCCCAAATGCTGGGATTAAAGGCGTGCGCCACCACCGCCCCGG CGCCCTGTACAGCTCTTATCTGAACCTTTTACCCATCGACAATGGGATGTTAGGGCTTGA GTCATTGTGAAAGGTTTTGGGGGTGAAATTCTCATTTTTTTTTTCTATTGAGTAGAGACT AAAGAACCAAGAAAACAAGAGCTGGAAGGATAGCTCAGCAGTAAAGAGCACCTGCTGTTC TTGCATGTGATCTGAGTTTGGTTTCCAGCACCCACATGGTGACACACAGCCAACCACTGG CATGCAGAAGGCACACATACATGCAGGCCAACCGTTCATGCATAAAAGTAAAATAAATCT AAAGAAAAAAAGGATGCTCCCTGGAGACTTTGAAGAGCTCTGGCCCCACCTCCTGTATGA TGAGACAACGTGGATCTGTGGTTCTGTGGAGTTCTATCTGTAGTGCTTTGTTCTGTAAGC CTAGGAAACATCCCCACCCTAAATAACTGTTGGTCAGCGCTGCTGAACATTGGGGGAGGG GGAGGGGGAGGGGGAGGGGGGAGGGGCGGCACTGAGCCACACGATGGTGGTAGGTGCCTC CCCCCCCCCACGTCCTTCACAGCTTCTACCCACAAATCAAGGACACTTTAAATCCCTCTA AGTCCCATCCCTGAGCCTCCAGGCAGCTGCTCTCCACTGGCAGACAGGGA
1	EXON 1	49,248,419	49,248,706	-	1	288	TCTCTGGCTATGTGGCCAGGAATTCTGATATCTCAGAGTATGGTGGGGGTGGGGTAGGAG AGGGGTTGGTATCACAGTGGGGTCTGTGGATGGACCTGCCTTTCACGATGCAGCAGACCG GACATAAGCTTGATTTCAACTTTAGGACATTAAAGAAAGTCACATCACGCGTGACTCGCA AGTTCAAGTGAAAAGGAGACATTAGGGGGTGCTACCAACCCTGACTCCAGAAGAGAATGA GGAGGCTGTCACTCTCCAAGGTCACCTGCCTGGCCCTAGAGTCCAAAG
	INTRON 1 - 2	49,240,672	49,248,418			7,747	GTGAGTCGGGAGAGGAAGGGTGTGC..........GCCTCACAGCCTCTTCTCTGTCCAG
2	EXON 2	49,240,483	49,240,671	1	1	189	GCACCTGTGCTCAGCTCCATCCCCCGCCTCAAGGCACCTTGCAAGTCGTCCGTGGAGATG GCACATCTCTGGGGACTGTGCTCATATTCCACTGCCCCTCTGGCCACCAGATGGTGGGGT CTGGCCTCCTCACTTGTGCCTGGAATGGGAGCACCGCTGACTGGTCTTCAGGAAGCCCTG TGTGCAAAG
	INTRON 2 - 3	49,238,937	49,240,482			1,546	GTAGGCCCCTCCTCCTTCCTGAGCT..........GAGCTTTGGTTTTTTTCCCTTGCAG
3	EXON 3	49,238,789	49,238,936	1	2	148	CTGTGCCACCGCATGAGACCTTCGGCTTTAAGGTGGCAGTGATCGCCTCCATTGTGAGCT GTGCCATCATCCTGCTCATGTCCATGGCCTTCCTCACCTGCTGCCTCCTCAAGTGTGTAC AGAAGAATGAGCGGCGGCGTGCTGACAG
	INTRON 3 - 4	49,237,613	49,238,788			1,176	GTACAGTGGCCTCATGTCCTTCCAG..........CTTCATCCTGAGCTCTCTCCTCCAG
4	EXON 4	49,237,424	49,237,612	2	2	189	GACGGCACAGCTCTGGTACCAGCTGAGAGGCGAGGACCTGGAGACGGTACAAGCTGCCTA CTTGGGCCTCAAGGGACACAACCACAATAACAGCAGCAGCGTCGGTGGTGGCAATGGTGG CCCCAGTGGTGGTGGCGGCAAGCCAGGAATTCAGCACAGCCAGGCCCATGACAACCACAG CTTCACCAC
	INTRON 4 - 5	49,231,332	49,237,423			6,092	GTAGGTTACCCTAGTCCTAAGGTGG..........CAGCTTATGCCTCTTCTTCCCACAG
5	EXON 5	49,230,829	49,231,331	2	-	503	AGACCCTGGTGACATCAGAGAGCAGGCTGGTGTGACCCACAGTGTGGACAAAGACCCTTG GACTTTCAGGATGGGAACTCCGGGCCCTGGTGGCTGCTCCAGCTCGCCAGGCACCTACGT GATGGTCCACGCGATGAACTCTGCAGGGCTGGCCCCTGGAAATCCTGGGAGGCCCAAAGT GTACCTTCCAGGGTGACCCCACTAGCCAGAGGTCTGCAAGTCAACGTTTGCCCAGCTGGA CATGGGCCAGGGCAGTCACCTCCAGGCATAGGGGGCCATCGGGAGCCTAGCTGACATTAA AGGCTGGGGCCCCAGCGGGGAGCAGTCTTTTCTAGAGGTCTCCTCTGTGGCTGTTACAGG ACCTGCTCAATGAACTGCTACTGGGGTGATGTCCCGAAGAAGTCACCACAACCAGGGTTC TTTTAGAGAGATTGAGACATTTTAAACAGATATAGTTTTGCATAGTAGACTATGAAAATA TTAATAAAGTACTTTCAGCAAAA
	3' upstream sequence						CAGGTAGCCACCTTATCATCTTCTGGGGCATGGACGCCCCGCCTGGAAGCCAGGACCCCC AGAACTTCATCTGTCAACTGTGGTGAGAGAAATGGATGTGTTTTCTTTGCATAAAAACAT AAAGTGGGGTTGGAAGTGCACCTCGGTTGGCAGAATGCTTGTGTATCTTGCAGAACAAGG CTTCAATCCCCAGCACCGTACAAACCTATAATCCCAGTGCTTGGAAGGTAGCAGGAGGAG GAGGAGGATATGAATTTCAGGGTCATCCTGGGCTATGGGAAACCCTGTCGAAATAAATGA ATTATAAACTCACTTTAAGGTAGAAACCACTGTCCCAGTTGGCCATCCCATCAAATCCTC GAATCCAGTTGTTATAAAACCAGTCACATATTATCACCCCATGGAGCCCTGAGCTTGTTG GAGAGATGGGAGTCACTGAGCTCTGGTTACTCACAGGTCTGTGTTTGCTGCTGGCAGTCA GTGGAGACCTTCTGAAGCCTTAGTGGGAATAGTCTGCCTTCCACAGCCCCCCACCCCACC CCAGTATCTGCATAGCCTGGAGGCTGATTTCCAAGGTGAGATGTGATGTGAGTTCCAGAT GGGAGCTGTTGCTTTACAGTCTTTTGCCTTGAAAGTCTCTCCCCCCCCCCCCATATTCTA TTCATCAGGAAACCCCAGCTGGGCTTCACTGGTGTGGGAAAGCAGAAGTGACAGACATAT TTTAAAGCCATCTGCTGGGTTTACAATCATAGTCCTAGCCACTCGTGAGGCTAAGGTAAA AAGATCACTTTTGAGCTGGAGGCTAGCCTACATAGCAAGACACCCCTCCCCCCCATCTCA AACAAACGAAAAAACCCAACCTAAACCCCACCGCAGCTCAGTGGTAGAACCCTTACCTAA CATCATGTGGCTGGGAGTTCAATCTCCAAGTCAAAGCTATCACAGTCATCTGGAAGCCAG CAACTTGTCAAATCAGATCTATAAACGCCAGCCCTGCCAG..........

Sequence Detail Report

Gene Symbol (Gene ID)	Susd3 (ENSMUSG00000021384)
Transcript ID	ENSMUST00000021816

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 258 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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