top page

Tutorials are available here.

Target CDS Information

Gene Symbol (Gene ID) Cenpp (ENSMUSG00000021391)
Cross Reference
CCDS CCDS26501.1
EMBL AK006234, AK012863, AK014919, ...show all
Fantom 1700022C02, 2810036G11, 4921518G09, ...show all
GO GO:0000775, GO:0003674, GO:0005515, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name Cenpp-201
protein_id AAI47208.1, AAI47209.1, BAB24472.1, ...show all
Reactome R-MMU-162582, R-MMU-1640170, R-MMU-194315, ...show all
RefSeq_mRNA NM_025495.3
RefSeq_peptide NP_079771
UCSC uc007qjk.1
UniParc UPI0000027672
Uniprot/SPTREMBL B2RVI6
Uniprot/SWISSPROT Q9CZ92
Definition protein_id:ENSMUSP00000021818
translation:
MDSETRELRALEAEVAALQRECRMLQNAGEKASGAWKSFQKISQSDSEEWESLKDLRSQL
EHLRSEHSFLSKLTGFNIRNYSKMEDIVNTEETEKDTKKVLQKHRLSGNCNMVTFQLEFE
VLEMETKEKKSSIITDLSIIMEPTEYSELSEFASRAEEKRDLLMFFRSLHFFVEWCEYRE
NTFKHFKEKYPDTVYLLEGTCSHCMEIRSTRQPGFELVIVWKIQIDEEGMVFPKLDLLTK
VPERALGLDKNRVIETAPLSFRSLLGVLGIEAALDSLIRLFSGDNN

Chromosome 13
Length
Position(start - end)
188,478
49,464,210 - 49,652,689
Orient to Chromosome minus
Link Location : (13:49464210-49652689)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Cenpp (ENSMUSG00000021391)
Transcript ID ENSMUST00000021818
Reports
substitution
cSNPs1
Insertion96
Deletion117
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num1
non-synonymous num0
synonymous substitutions 49652606 (p.Ala28Ala),
non-synonymous substitutions
B6 transcript
(ENSMUST00000021818)
MDSETRELRALEAEVAALQRECRMLQNAGEKASGAWKSFQKISQSDSEEWESLKDLRSQL
EHLRSEHSFLSKLTGFNIRNYSKMEDIVNTEETEKDTKKVLQKHRLSGNCNMVTFQLEFE
VLEMETKEKKSSIITDLSIIMEPTEYSELSEFASRAEEKRDLLMFFRSLHFFVEWCEYRE
NTFKHFKEKYPDTVYLLEGTCSHCMEIRSTRQPGFELVIVWKIQIDEEGMVFPKLDLLTK
VPERALGLDKNRVIETAPLSFRSLLGVLGIEAALDSLIRLFSGDNN*
MSMv4 transcript
MDSETRELRALEAEVAALQRECRMLQNAGEKASGAWKSFQKISQSDSEEWESLKDLRSQL
EHLRSEHSFLSKLTGFNIRNYSKMEDIVNTEETEKDTKKVLQKHRLSGNCNMVTFQLEFE
VLEMETKEKKSSIITDLSIIMEPTEYSELSEFASRAEEKRDLLMFFRSLHFFVEWCEYRE
NTFKHFKEKYPDTVYLLEGTCSHCMEIRSTRQPGFELVIVWKIQIDEEGMVFPKLDLLTK
VPERALGLDKNRVIETAPLSFRSLLGVLGIEAALDSLIRLFSGDNN*
homology100.00 (287 / 287)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Cenpp (ENSMUSG00000021391)
Transcript ID ENSMUST00000021818
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TGGTGACAGCAAGGATCATAATGAAGTCTAATTTCGGAACCCGGAATTGT
TAACACTATCCTACCAAGATTGCTGGAAACGTTTTCCAGAGGTCGCTCCATCTCGTTTAG
CTCTCGGCAGATGTTCAGCTCTTACTCAAACCTTTCTCAAAAGTTGGCTGTCTCCTTCCA
AGCGAGATCACTAAATAGCGGCAGAAGCCCAAAGCAAAGGCCAGCACTCTGGGAAAAAAA
CCTACAGTGTACCCCTTCTTGGTAGCCACCGCCCCATCCTTCCAGCCCTGCCCTCTCTCT
TCGAGAAGCCCCTAAGGAAGGAGAGGAGAGGCTAAGCCCAATAGCCCATCACTTCTCACG
AGCAAACACTCTTCCTCAGGGCGCTAGTCCGACTCAGCTCAAGCCCGGCGTAGCACTTAA
CGTCTAATAACACGTGCCGGCAAGTGCATTTTCCTTTCCTTCCTACAAAGTTTCCAACCC
AATCTCCTAAGGTTCCGTTATCCCGCAGTTCCAGAGGGCTCTTTATTTCCTCCGCCTTCG
CTTTTACTGACGTTCTGTTAGTTCTCCTCCACGTTGTAAAACTGACAGAGTGTGAGAAAG
AAAAATAAAAATCGGTAATTCCTACAGAAAAGACACTCCGTCGCGTGGTTCCTGATTTCC
GGTTCAAGTAGGCGGAAGTGAAGAAGCGGAACCAAAATAAAGAGACTCCTTTCCTCGTGC
TTCCGAGAATCCGCCCCCTTCGGTGACGTAAGAGCTCGGCTGGCCCAGTGGCCGTTAGAC
GGGGTGGGCGGCCGTTGGAGGGTGACGTGCAATTTGGAACGAACCAACTCGCAGAGGCGG
CGGGGGTGTCTAGACGCTCGACGCGACATTTCGCGGGCCGTCAGGCTCGGGAACGTCGTC
CGAGGCCGTGGGAGTGGACGCGCGACTCCCGGCAGCCTCTCCCCCCGTGAGCTCGAGAGT
GGTCCGTTCCAGGAGCGCGCGCGCTCCTTGAAGTCTCCTGGCTGCCCGAG
1 EXON 1 49,652,583 49,652,746 - 2 164
GCGCCCAGACTGCCATTCTCCGGGCTACTTCACCTTCAGGGTTCCACGTCGGTAGCCATG
GATTCCGAGACCCGCGAACTGCGCGCCCTGGAGGCGGAGGTCGCAGCGCTGCAGCGAGAG
TGCAGAATGCTGCAAAACGCCGGGGAGAAGGCGTCCGGAGCCTG
INTRON 1 - 2 49,650,300 49,652,582 2,283
GTACGTGGCTCGCGTCCATCCCTCC..........AGTAACTATAATATTTGCTTTTCAG
2 EXON 2 49,650,121 49,650,299 2 1 179
GAAATCATTTCAAAAAATTTCCCAATCAGATTCTGAGGAGTGGGAATCTTTGAAAGACTT
GAGAAGTCAGCTTGAACATTTAAGATCTGAGCACTCATTTCTAAGTAAACTTACTGGCTT
CAATATAAGAAACTATTCCAAGATGGAAGACATTGTAAACACTGAAGAGACAGAAAAAG
INTRON 2 - 3 49,647,655 49,650,120 2,466
GTACACATCATTTTTTAACTTCAAT..........AAGTATTTTATTTTCTAATTAATAG
3 EXON 3 49,647,566 49,647,654 1 0 89
ATACAAAGAAAGTTCTACAGAAACACAGATTATCAGGAAATTGCAACATGGTGACATTTC
AACTGGAATTTGAGGTTCTGGAAATGGAG
INTRON 3 - 4 49,641,315 49,647,565 6,251
GTAACTGTAGCTTGTTGTGATAACA..........CATAAACTTTTTATCTTTATTTTAG
4 EXON 4 49,641,226 49,641,314 0 2 89
ACTAAAGAGAAAAAATCTTCGATTATAACTGACCTCAGCATAATAATGGAGCCCACAGAA
TATTCAGAATTAAGTGAATTTGCATCTAG
INTRON 4 - 5 49,627,352 49,641,225 13,874
GTGAGCTGTTTTACAAATTTTTAAA..........AATCATAGCATATTACTCTTAACAG
5 EXON 5 49,627,255 49,627,351 2 0 97
AGCAGAAGAAAAAAGAGATTTGCTCATGTTTTTCCGAAGTCTGCATTTTTTTGTGGAGTG
GTGTGAATATCGTGAGAACACATTTAAGCATTTCAAG
INTRON 5 - 6 49,465,759 49,627,254 161,496
GTAAAGTCTGAAGTCTTTGAATATA..........CTGACTGTAACATTTTCACATACAG
6 EXON 6 49,465,679 49,465,758 0 2 80
GAGAAATACCCAGATACTGTATACCTCTTGGAGGGTACCTGTTCCCACTGCATGGAGATC
CGCAGTACCAGACAGCCAGG
INTRON 6 - 7 49,464,787 49,465,678 892
GTAAGTCTGTGCATCTCGACACCCC..........GCAACAAACATCACCTCTTTTTCAG
7 EXON 7 49,464,695 49,464,786 2 1 92
GTTTGAACTGGTGATTGTCTGGAAGATACAAATCGATGAGGAAGGGATGGTTTTTCCAAA
GCTGGATCTTCTCACCAAAGTCCCAGAGCGAG
INTRON 7 - 8 49,464,338 49,464,694 357
GTAGGACTCTGGGTGTATGGCTACC..........CTTACCAGGTTTGTTTTCTTCACAG
8 EXON 8 49,464,027 49,464,337 1 - 311
CCCTAGGACTGGACAAGAACAGAGTCATAGAAACTGCTCCTCTCAGTTTCCGAAGCCTGC
TAGGTGTACTTGGTATTGAAGCTGCTCTAGACAGCCTGATAAGATTGTTCAGTGGAGATA
ACAACTAGTCTCCCGCTGGCAAACACACAGGAACATTGCTGGGCTGAGGAACATTCAAAA
TATGTTGACTATGAGCATTTCTCTTTTCCAATTAGAAACCATATCCTTCAGACATGAGTT
TGTGTGCATTAGTGGTATATTACATATGAACTCCCATGGCATAAAAAAAAATAAAGCTAT
TAAGATATGTT
3' upstream sequence
AATAGTATAGTGCTTTGTACAGTTAAGTTTAGTATTTGAGAAAATGTTCCAAGAATGGTT
GTCCATTCTCAAATGAGTGTGAAAGAGCTGTGTTCAGCGGTCAACCTCACATCAGGTTGG
CCCAAGACAGCATGGGACACAGAAAAACCCAAAGCTATCCATCTGGTCTGCCCAGCAGAA
ATCTCACAGCAAGCCCCGATACTCCTCTCGGTCTCCTACAGAAGTAGCACTGTTGCCTTT
ACTTGGAAACTTGAAGACACACCCACAGCCTGAGGGTGGTACATAACTATAATTCCAGCA
CACAAGAGCAACCAAAGTTTAAAGCAGCCTTGGCTATATAGTGAGCCACTGTCTCAGAAA
ACAAAGGCTAGATTATACCTCCATCTTAGTAGAACAATTGCCTAAAATGTGCAAGGCTCC
TAAGTCCAATCCCCCCGTACCACATAAGAACTACCCAGGCTAAGGCCGCATTATCTCAGA
CACAGAGCTATATTGTTTGGTGAGTGCCTCAGTTACCTGATGTGCTGCCAAGATGAGGGG
TTGGTGTGGGTATCCTGAACCAAGCAGAATTAGGAGTATGGTTGGAGGAGAGCCCTGTAC
ATGTTGGCGGGGTGCTCCACCTGTGTTCTTTACTCCAGGAGACACTGTTTGTTTCCATCT
ACCTATCTATCCAAGACAGGGCCTCTTGCAAAATTATAATTCTCTAAAACAGACCAGCAT
TCTAGAAATACAGGTTTCTGTGAAACTGCTCTGAGAGCCTGGGACCCAGCCATATCTTAG
ATCATTACTATGGCCTCAGACAACCAAAGACACACACAAACATATACCCCTAGTCCACCT
CCACAGCAGGCATCCCTGAGTCAAAACAAAACCATGACCTTCAAGCATGTGACTCAGGTG
AAGGATATAGGCACATATGCTTGTTTGCATACACCAGTTTAAAAAAAATCGAACGATCCA
AATGTACAAGTGTCTGTCTTTACCTGAGTGTTCAAGAGCT..........

Sequence Detail Report

Gene Symbol (Gene ID) Cenpp (ENSMUSG00000021391)
Transcript ID ENSMUST00000021818
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 287 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information