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Target CDS Information

Gene Symbol (Gene ID) Fars2 (ENSMUSG00000021420)
Cross Reference
CCDS CCDS26453.1
EMBL AK013211, AK170986, BC002147
Fantom 2810431B21, F630215A18
GO GO:0000049, GO:0000287, GO:0004826, ...show all
goslim_goa GO:0003674, GO:0003723, GO:0005575, ...show all
MGI_trans_name Fars2-201
protein_id AAH02147.1, BAB28715.1, BAE42160.1
RefSeq_mRNA NM_024274.3
RefSeq_mRNA_predicted XM_006516769
RefSeq_peptide NP_077236
RefSeq_peptide_predicted XP_006516832.1, XP_006516833.1, XP_011242647.1
UCSC uc007qck.2
UniParc UPI0000021BDC
Uniprot/SWISSPROT Q99M01
Definition protein_id:ENSMUSP00000021857
translation:
MVCLALVRAAYEHIYLVRKVSHACRCHQHRAWSSKPAASQSAVQGAPGSVLEILGKSYPQ
DDHTNLTQKVLSKVGRNLHNQKFHPLWLIKERVKEHFYQQYMVRSRTPLFSVYDQLPPVV
TTWQNFDSLLIPADHPSRKKGDNYYLNRAHMLRAHTSAHQWDLLHAGLNAFLVVGDVYRR
DQIDCQHYPVFHQLEGVRLFSKHELFAGVKDGESLQLFEEGSRSAHKQETHTMEAVKLVE
FDLKQVLTRLVTHLFGDGLEVRWVDCYFPFTHPSFEMEINFRGEWLEVLGCGVMEQQLVN
SAGAQDRIGWAFGLGLERLAMVLYDIPDIRLFWSEDERFLKQFLLSDINQSVKFQPLSKY
PAVFNDISFWLPSENYTENDFYDIVRTVGGDLVEKVDLIDKFEHPKTHRTSHCYRITYRH
MERTLSQREVGNVHQAVQEAAVQLLGVEGRF

Chromosome 13
Length
Position(start - end)
332,908
36,204,530 - 36,537,439
Orient to Chromosome plus
Link Location : (13:36204530-36537439)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Fars2 (ENSMUSG00000021420)
Transcript ID ENSMUST00000021857
Reports
substitution
cSNPs1
Insertion234
Deletion298
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num1
non-synonymous num0
synonymous substitutions 36204727 (p.Leu66Leu),
non-synonymous substitutions
B6 transcript
(ENSMUST00000021857)
MVCLALVRAAYEHIYLVRKVSHACRCHQHRAWSSKPAASQSAVQGAPGSVLEILGKSYPQ
DDHTNLTQKVLSKVGRNLHNQKFHPLWLIKERVKEHFYQQYMVRSRTPLFSVYDQLPPVV
TTWQNFDSLLIPADHPSRKKGDNYYLNRAHMLRAHTSAHQWDLLHAGLNAFLVVGDVYRR
DQIDCQHYPVFHQLEGVRLFSKHELFAGVKDGESLQLFEEGSRSAHKQETHTMEAVKLVE
FDLKQVLTRLVTHLFGDGLEVRWVDCYFPFTHPSFEMEINFRGEWLEVLGCGVMEQQLVN
SAGAQDRIGWAFGLGLERLAMVLYDIPDIRLFWSEDERFLKQFLLSDINQSVKFQPLSKY
PAVFNDISFWLPSENYTENDFYDIVRTVGGDLVEKVDLIDKFEHPKTHRTSHCYRITYRH
MERTLSQREVGNVHQAVQEAAVQLLGVEGRF*
MSMv4 transcript
MVCLALVRAAYEHIYLVRKVSHACRCHQHRAWSSKPAASQSAVQGAPGSVLEILGKSYPQ
DDHTNLTQKVLSKVGRNLHNQKFHPLWLIKERVKEHFYQQYMVRSRTPLFSVYDQLPPVV
TTWQNFDSLLIPADHPSRKKGDNYYLNRAHMLRAHTSAHQWDLLHAGLNAFLVVGDVYRR
DQIDCQHYPVFHQLEGVRLFSKHELFAGVKDGESLQLFEEGSRSAHKQETHTMEAVKLVE
FDLKQVLTRLVTHLFGDGLEVRWVDCYFPFTHPSFEMEINFRGEWLEVLGCGVMEQQLVN
SAGAQDRIGWAFGLGLERLAMVLYDIPDIRLFWSEDERFLKQFLLSDINQSVKFQPLSKY
PAVFNDISFWLPSENYTENDFYDIVRTVGGDLVEKVDLIDKFEHPKTHRTSHCYRITYRH
MERTLSQREVGNVHQAVQEAAVQLLGVEGRF*
homology100.00 (452 / 452)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Fars2 (ENSMUSG00000021420)
Transcript ID ENSMUST00000021857
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TTATAACTTAAAATAAATTTAAGTTTTAAATGTTTTTGAAGAATTGATGC
TCCTGTCCTCTTGTTATAGGTCCTAGACTCTAGGATCTAGCAGTAAGATTTCAGTTCGGC
GAGGCAGGATAAACTAAGAATTCAGTTTTTAAAGGCTTAGCAACTCATTTTACCTTTAAC
ATGAATATGTAGCCCCTCTCCACCATCCTTTAGTAAGAACGTATCTGATACTTGGAACCA
ACGTCACGAATTAAAACACTAGTGAAATGAAAGGGGGCCCTAGAGCAAGCCTTCAGTTTT
GTGTCCACGTGGTCTGGACTGCCTGCTTCCACTCTTGTAATCTCAAGGCAAGATATAGGT
ATGCCCTAAGTTTCCTTGTCCTAGCTTCTCACTGGTAGCTTCGCGTTCATCACTTTGTAC
CGCAGAAACAGGACACTGTTTAATGGTCCTAAAGCCCCTACGTGGGTGTCAGTTCAGGGA
AGGTATCCCAGCATTTGAAGGGCAAGTCCTTGGCTCCTCCCCTCCAGGGCTCTGAGGGTC
ACACCTGGGGGTGGACAGTAGCACGTGCGCGTCATGGGAGTGGAGCCTGTCACTTTCACA
GGTTGTGGCCGCCTGATCCGCGACCCCCGCAGACAGAGCTGGGCACCCGATTCCCGGCCC
TCCCCCCGGGTCACCTGTAATTGTAGGCGCTGAAATGCTTGCTCTCTCTCATCATCGCCC
GGTACAGATCTAAAACTTGTGCGCGGCTGGAGGCTGCCATGTTGGAAATAAACAAAAACA
AACAAACCAAAAAACACCCTAACAACAAAACCAAACAGGTCCTTCTTCGTAGAAGCCCCA
AGTTTAACTGAACCCAAATGTCAAACGATGCAAAAAAAAAAAAAAAAAAAAAAAAGCACG
CTGGAAGGCAGGAGAAGAGAGGCTCCGCCTGGCTCGCGCGCGGCCTGGCTCGCGTCCCGC
GCGAGAGGTGGCGCCGCAGGCAGGGCGGCGGGCAGCTAAGGGGTGGCGCC
1 EXON 1 36,117,411 36,118,005 - - 595
CGTGTCCTGGAGGCTCCGCGTTCCTCACAGGCTCCTCGGGCGGCAGGAGGCCGAGCCGTC
CAGCCCCAGGCTCGCTCCTCGGGAGGACAGTCGCGGGCTCGAACACCAGGGTTCAAAGCC
TCCTCCGCCTTTCGAACCGCCCGGGGGCGTGGCCGAGATCCCGGTGTCTCCTGACACCAC
GCCCCCTACACCTGCCTAGGCCCCGTTGCCTGGGTTACGAGCCGCGCTCCCCAGCCCCGC
CCCTGCCCGGCTCGGCTGTCTTTGGCGCTGCCTGACCTGCTGTGCACGAAAACGAGGGTG
ACTTTGCTTTGGATCCGTCTGGTTGGCAGCCTGAGTTTATCAGTGTCATCGTGACTGGGG
GACGCAGCGCCAGTGGTGCGGAGGTAACTAGCTGGCGACTTCCTGGCGCACCGGCTTGTC
TTTGGGCGAGCGGCTCAAGGGACCTAGGGCCCTGGCCTCTTCCCGTCAAGATGGCGGCGC
CCAGCGCGCCCAGCGTCTCGGTAGCCAGAGGTTAAGCTCAGTGACGGCGGAGTGAGTGTG
TGGCCGCTTTGCGGACTTCGAAACGCCCGCGTTTGGTTTCCCCGGCGTACGCTGG
INTRON 1 - 2 36,118,006 36,204,508 86,503
GTGAGTGCTGGCCTTGCTGCAGAGT..........GGCTTTCCCTGTGTGCTTTTTCCAG
2 EXON 2 36,204,509 36,205,141 - 0 633
AGTTTGTGAGAAGCTTCTATAATGGTCTGCTTGGCTCTCGTCAGAGCTGCCTATGAGCAC
ATCTACCTGGTGAGGAAGGTCAGTCATGCCTGCAGATGCCATCAACATCGGGCTTGGAGC
TCAAAGCCAGCTGCATCACAGTCTGCTGTCCAGGGTGCTCCAGGCAGTGTGCTGGAGATA
CTTGGTAAATCCTACCCTCAGGATGACCACACTAACCTTACCCAGAAGGTCCTTTCCAAG
GTGGGCAGGAACCTGCACAACCAGAAGTTCCACCCTCTGTGGCTGATTAAGGAGCGGGTG
AAGGAGCACTTCTACCAGCAGTATATGGTGCGATCCAGGACACCTCTATTCTCCGTCTAT
GACCAGCTTCCTCCAGTGGTCACCACCTGGCAGAACTTTGATAGCCTGCTAATCCCAGCT
GACCACCCCAGCAGGAAAAAGGGGGACAACTATTACTTGAATCGGGCACACATGCTGAGA
GCACACACATCAGCGCATCAGTGGGACTTGCTGCATGCGGGACTTAATGCCTTCCTTGTG
GTAGGTGACGTGTATCGTCGTGACCAGATTGATTGCCAGCACTACCCAGTTTTCCACCAG
CTGGAGGGTGTCCGGCTCTTCTCCAAGCATGAG
INTRON 2 - 3 36,205,142 36,232,121 26,980
GTGAGTCTTTAGATGTGCCTTGTTG..........CATTATTCCTTTTGGTTGTTTCCAG
3 EXON 3 36,232,122 36,232,281 0 1 160
TTATTTGCTGGCGTAAAGGATGGAGAAAGCTTGCAGCTCTTTGAAGAAGGTTCTCGCTCT
GCTCATAAGCAGGAGACACACACCATGGAGGCTGTGAAGCTTGTGGAGTTCGACCTTAAA
CAAGTACTGACTAGGCTTGTGACACATCTTTTTGGAGATG
INTRON 3 - 4 36,232,282 36,246,362 14,081
GTAGGTACTTAGAAATCTTTGTGTT..........GTATGCCTTTCCTTGTCCTCTGCAG
4 EXON 4 36,246,363 36,246,494 1 1 132
GGCTGGAGGTTCGGTGGGTGGATTGCTACTTCCCCTTCACCCACCCTTCCTTCGAGATGG
AGATCAACTTCCGTGGAGAATGGCTTGAAGTCCTTGGCTGCGGTGTGATGGAGCAGCAGC
TTGTCAATTCAG
INTRON 4 - 5 36,246,495 36,341,936 95,442
GTAAGAAAGAATTCCACTCTGCACT..........CATTTTTCTTTGTTTCTGATCATAG
5 EXON 5 36,341,937 36,342,097 1 0 161
CTGGTGCTCAGGATCGAATCGGCTGGGCGTTTGGCCTGGGATTAGAAAGATTGGCGATGG
TCCTCTACGACATTCCTGACATCCGCCTTTTCTGGAGTGAGGATGAGCGCTTCCTGAAGC
AGTTCCTCCTGTCGGACATCAACCAGAGTGTCAAGTTTCAG
INTRON 5 - 6 36,342,098 36,410,078 67,981
GTAGGATGACTTATAAGAATTAGGA..........ATGTCTCTTTCTCCCATTTTGTCAG
6 EXON 6 36,410,079 36,410,230 0 2 152
CCTCTTAGCAAGTACCCCGCCGTGTTCAATGACATTTCATTCTGGCTGCCCTCTGAGAAC
TACACGGAGAATGATTTCTATGACATCGTCCGAACAGTCGGAGGAGACCTGGTAGAAAAG
GTTGATCTTATAGACAAGTTTGAACATCCAAA
INTRON 6 - 7 36,410,231 36,537,300 127,070
GTAAGTGAAAAACTTTCCGATTTTA..........CTTGCATTTCCTCCTTCCTCAACAG
7 EXON 7 36,537,301 36,537,592 2 - 292
GACACACAGGACCAGCCACTGCTACCGCATTACCTACCGCCACATGGAACGGACACTGTC
CCAGAGAGAAGTCGGCAATGTCCACCAGGCTGTGCAGGAGGCCGCCGTGCAGCTGCTGGG
TGTGGAGGGCCGTTTCTGATGCGGTGGCAGTCTACAGGCCACAGCCCTCATAGAGCTCCA
GGGAGCACCAGGAAGGGGGAAACACATTGTTTGTGAACTGGAGTGTCTGCCCTCACTTGA
CAGATGGGTCTGCTTTAGGACGTCACGAAATAAAGGATCACTTTTCAGAAGC
3' upstream sequence
ATTGACATAGCATTTGTCTTTTATTTGGGGGAAGGAGAAAGCAGACACTGATATAAGAGT
TCCCTGCTATTCGTTTAGAAAGGCTTGGCCCATTGGCTCTCCTTGTGGTTAATTGGTCCC
TGGGTTCCATTAAGCACCAGGCATGATTCTTGCCTGACAGGCTCTTCCACCCATGTAATG
AGTGAAGCCACAGAGAAGGGTCTCAGAAACTGGATATAGTGCAGGCATGCCTAGTGTGTG
TATATTTTGCTTGGCTATAGGTCACAGATCTTGCATTTTGACAAATTGGAGGTTCGTGGC
AACCTGTGTTGAGCAAGTCTGTTGTCCCCACTTTCTTTCAGCTTGAATGATCATTATTAT
TTCTTAGCAGTGCTTTTCAATTAGGGTAAATCTATGGTTTTCTTTCTTTTCTTTTTTTTT
TTTTTTTTAATACCATAAAGCTGTTGGATACATCGCAGAGGGCAGTAGCCTATGAGCCTA
ACTTCCATGTGCACTGGGAAACCAAAAGATGCCTATAACTTCCTTCATGATGAATTCACT
TTATCACAGTAGTCTGGAACCCCATCATCATCCTCAGCCCGAGCCTGTCCGGGAAGCCTT
TGAGTCTCTGCCATCCTTTCTCCCTTCTCTTCTTTGTTTTGCAAAGGGCAGGCTTCAAAG
AGGCTGCTGATGAAATGCCAGGGCTTCCCTTGAAAGTAGAAGTCACAGCTCTAAGCCAGG
CAAGGTAGATATTTGCTTTCATAAACCCAAGGCCAGGGGCCAGCCCCTTGGCCCTAGGCT
TGGACCTTCCTGCCCACTGCCCTAGGAGAGGAAGGAAAAGGAGCAAGAGCTGCCCTGAGT
GCAGGAGGCACACTGAGGGCTAGGCCTGCCAACTCCCCAGGTTGTCCCCTGCAGGAGGCC
TCCACTTCCAGAATGAAGGCGACCTTTAAGGGAGAGCACAGGGCTTTGATGTCTCCCCCC
TTTCCATCCTGGGCACTTTGTAGTCAGCCTGCTTCACTCA..........

Sequence Detail Report

Gene Symbol (Gene ID) Fars2 (ENSMUSG00000021420)
Transcript ID ENSMUST00000021857
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 452 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information