MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Gadd45g (ENSMUSG00000021453)

Cross Reference

CCDS	CCDS26515.1
EMBL	AB021884, AC126247, AY258502, ...show all
GO	GO:0000185, GO:0000185, GO:0000186, ...show all
goslim_goa	GO:0002376, GO:0003674, GO:0005575, ...show all
MGI_trans_name	Gadd45g-001
OTTP	OTTMUSP00000026704
OTTT	OTTMUST00000055694
protein_id	AAP79506.1, BAA78538.1, EDL41110.1
RefSeq_mRNA	NM_011817.2
RefSeq_peptide	NP_035947

UCSC	uc007qmq.2
UniParc	UPI0000021BF8
Uniprot/SPTREMBL	Q9R0S0
Vega_transcript	Gadd45g-001, OTTMUST00000055694
Vega_translation	214463, OTTMUSP00000026704

Definition

protein_id:ENSMUSP00000021903
translation:

MTLEEVRGQDTVPESTARMQGAGKALHELLLSAQRQGCLTAGVYESAKVLNVDPDNVTFC
VLAADEEDEGDIALQIHFTLIQAFCCENDIDIVRVGDVQRLAAIVGADEEGGAPGDLHCI
LISNPNEDTWKDPALEKLSLFCEESRSFNDWVPSITLPE

Chromosome

Length
Position(start - end)

1,198
51,846,780 - 51,847,979

Orient to Chromosome

plus

Link

Location : (13:51846780-51847979)
/

Detail Map

name	Gadd45g (ENSMUSG00000021453)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Gadd45g note : growth arrest and DNA-damage-inducible 45 gamma [Source:MGI Symbol;Acc:MGI:1346325]

name	Gadd45g (ENSMUSG00000021453)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000021903

name	Gadd45g (ENSMUSG00000021453) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS26515.1 RefSeq_peptide:NP_035947 RefSeq_mRNA:NM_011817.2 Vega_transcript:Gadd45g-001 Vega_transcript:OTTMUST00000055694 Uniprot/SPTREMBL:Q9R0S0 UCSC:uc007qmq.2 EMBL:AB021884 EMBL:AC126247 EMBL:AY258502 EMBL:CH466546 GO:GO:0000185 GO:GO:0000185 GO:GO:0000186 GO:GO:0005515 GO:GO:0005515 GO:GO:0005634 GO:GO:0005634 GO:GO:0005737 GO:GO:0005737 GO:GO:0006469 GO:GO:0006950 GO:GO:0042095 GO:GO:0043065 GO:GO:0043065 GO:GO:0045063 GO:GO:0046330 GO:GO:0046330 GO:GO:0051726 GO:GO:1900745 GO:GO:1900745 MGI_trans_name:Gadd45g-001 Vega_translation:214463 Vega_translation:OTTMUSP00000026704 goslim_goa:GO:0002376 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005737 goslim_goa:GO:0006950 goslim_goa:GO:0007155 goslim_goa:GO:0008150 goslim_goa:GO:0030154 goslim_goa:GO:0043226 goslim_goa:GO:0048856 protein_id:AAP79506.1 protein_id:BAA78538.1 protein_id:EDL41110.1 OTTP:OTTMUSP00000026704 OTTT:OTTMUST00000055694 UniParc:UPI0000021BF8
definition	note : transcript_id=ENSMUST00000021903 protein_id : ENSMUSP00000021903 translation : MTLEEVRGQDTVPESTARMQGAGKALHELLLSAQRQGCLTAGVYESAKVLNVDPDNVTFCVLAADEEDEGDIALQIHFTLIQAFCCENDIDIVRVGDVQRLAAIVGADEEGGAPGDLHCILISNPNEDTWKDPALEKLSLFCEESRSFNDWVPSITLPE

name
type	STS
link
xref	UniSTS_NUM:273565 UniSTS:PMC86941P1
definition	note : map_weight=1 standard_name : PMC86941P1

name
type	STS
link
xref	UniSTS_NUM:180532 UniSTS:AI327420 WI_MRC-RH:417591
definition	note : map_weight=1 standard_name : AI327420

name
type	STS
link
xref	UniSTS_NUM:160301 UniSTS:C86281 WI_MRC-RH:303324
definition	note : map_weight=1 standard_name : C86281

name
type	misc_feature
link
xref
definition	note : contig AC126247.3 28890..143813(1)

name	Gadd45g (ENSMUSG00000021453)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000055695 Vega_transcript:OTTMUST00000055695 MGI_trans_name:Gadd45g-002 OTTT:OTTMUST00000055695
definition	note : retained_intron note : transcript_id=ENSMUST00000132480

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Gadd45g (ENSMUSG00000021453)
Transcript ID	ENSMUST00000021903

Reports
substitution
cSNPs	2
Insertion	8
Deletion	15
SNPs	-1kb 51841680(c.-5100G>A), 51841731(c.-5049C>T), 51841775(c.-5005T>A), 51841799(c.-4981A>G), 51841858(c.-4922T>G), 51842098(c.-4682T>C), 51842171(c.-4609C>A), 51842275(c.-4505T>G), 51842386(c.-4394A>G), 51842597(c.-4183C>T), 51842784(c.-3996T>C), 51842859(c.-3921A>G), 51842900(c.-3880T>C), 51843068(c.-3712G>A), 51843097(c.-3683G>A), 51843376(c.-3404C>T), 51843384(c.-3396G>T), 51843475(c.-3305G>T), 51843540(c.-3240G>A), 51843574(c.-3206A>C), 51843649(c.-3131C>T), 51843667(c.-3113T>G), 51844005(c.-2775A>G), 51844118(c.-2662G>A), 51844164(c.-2616C>T), 51844541(c.-2239T>A), 51845442(c.-1338A>C), 51845451(c.-1329A>C), 51845452(c.-1328A>C), 51845512(c.-1268C>G), 51845523(c.-1257T>C), 51845565(c.-1215C>A), 51845591(c.-1189C>A), 51845628(c.-1152G>A), 51845700(c.-1080C>A), 51845753(c.-1027T>C), 51846405(c.-375T>A), 5'UTR 51846731(c.-49G>C), CDS 51847712(c.312C>T), 51847719(c.319G>T), 3'UTR 51848015(c.36G>A), 51848071(c.92G>A), 51848114(c.135G>A), INTRON 51846866(c.53+34T>C), 51847036(c.53+204G>A), 51847088(c.53+256G>A), 51847515(c.156-41T>A), 51847812(c.369+43A>G), +1kb 51848543(c.564G>A), 51848746(c.767T>C), 51849081(c.1102G>C), 51849200(c.1221C>T), 51849227(c.1248A>G), 51849732(c.1753C>T), 51849784(c.1805A>G), 51849793(c.1814G>C), 51850266(c.2287T>G), 51850442(c.2463T>A), 51850681(c.2702T>C), 51850785(c.2806T>C), 51850828(c.2849A>G), 51850966(c.2987C>G), 51850971(c.2992A>G), 51850974(c.2995G>T), 51850975(c.2996G>A), 51851261(c.3282A>G), 51851273(c.3294T>C), 51851387(c.3408G>C), 51851520(c.3541T>C), 51851528(c.3549A>G), 51851530(c.3551G>A), 51851632(c.3653A>C), 51851778(c.3799A>G), 51851816(c.3837G>T), 51851963(c.3984A>G), 51851966(c.3987C>T), 51852050(c.4071C>A), 51852163(c.4184A>G), 51852246(c.4267G>A), 51852617(c.4638T>C), 51852625(c.4646T>C), 51852629(c.4650C>T), 51852673(c.4694A>T), 51852696(c.4717G>A), 51852904(c.4925T>C), 51852913(c.4934T>C), 51852946(c.4967A>G), 51853044(c.5065C>T), 51853115(c.5136G>A), 51853264(c.*5285C>T),
Insertions	-1kb 51843039 (c.-3741_-3740insCCCC), 51843427 (c.-3353_-3352insT), 51843429 (c.-3351_-3350insT), 51844753 (c.-2027_-2026insA), 51845504 (c.-1276_-1275insG), 5'UTR CDS 3'UTR INTRON +1kb 51849256 (c.1277_1278insG), 51852381 (c.4402_4403insTGATT), 51852777 (c.4798_4799insTT),
Deletions	-1kb 51842508 (c.-4271delT), 51843342 (c.-3437delT), 51846307 (c.-472_-466delGAGCAAA), 5'UTR CDS 3'UTR INTRON 51847859 (c.370-9_370-8delTA), +1kb 51849361 (c.1383_1386delGGGG), 51849530 (c.1552_1558delAAAAAAC), 51851046 (c.3068delA), 51851749 (c.3771_3773delTTT), 51851853 (c.3875_3883delAGAAGATAC), 51852177 (c.4199delT), 51852278 (c.4300_4301delGG), 51852284 (c.4306_4307delGG), 51852685 (c.4707delG), 51852690 (c.4712delG), 51853120 (c.5142_5143delTC),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	1
non-synonymous num	1
synonymous substitutions	51847712 (p.Ile104Ile),
non-synonymous substitutions	51847719 (p.Ala107Ser),
B6 transcript (ENSMUST00000021903)	MTLEEVRGQDTVPESTARMQGAGKALHELLLSAQRQGCLTAGVYESAKVLNVDPDNVTFC VLAADEEDEGDIALQIHFTLIQAFCCENDIDIVRVGDVQRLAAIVGADEEGGAPGDLHCI LISNPNEDTWKDPALEKLSLFCEESRSFNDWVPSITLPE*
MSMv4 transcript	MTLEEVRGQDTVPESTARMQGAGKALHELLLSAQRQGCLTAGVYESAKVLNVDPDNVTFC VLAADEEDEGDIALQIHFTLIQAFCCENDIDIVRVGDVQRLAAIVGSDEEGGAPGDLHCI LISNPNEDTWKDPALEKLSLFCEESRSFNDWVPSITLPE*
homology	99.38 (160 / 160)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Gadd45g (ENSMUSG00000021453)
Transcript ID	ENSMUST00000021903

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........GGGAAAAACAATGTGGAACAGCAGAGTTCCCGGAGTCTGAACCCCGGAAC CTCTGGGGTTTGGGGCACAGTAGCCCTGGTGTACAGCTCACTCTCGAGCTTAGCACGCGT GCATCAGAATCCCAGCAGTCAGAATAAGCCTAAGAGGTGCGCACCCAGTGGCGGGGGAGC GGCACGCTGCTCCGACCCCCACGCGCCGGGCAACCCCGCGACCCCGGCTCCCGACGGGGC TCGGCCCACCCCACCGGCGGCAGGTGGACAGTGTTGCTATGAAAGAGAAAGCGTCGATTG TCCCCACCGCGAACTGCCACACGCCAGACCTCCTCTTTTGTGTGCCCCGTATAGAAATGC AAACGAGCCGCGTGTGCCGGCAGCAATCTGCTGGTCCCTGCTGCCCGCGTCCCACAGCGA TCTGCTAGGGGTAGGGGTGGGGGATGGGAGGGCTTAGACCTTGCAGCCGCGACCCCGAAA GGCGCAGAGTCCTGAGTCCCTAGTGGCAGCCTAGGCCTAATGTCAGCTGCAGTTGCAAAC CTTTGACTTTAAGTTTCGGTTTCGATGTAACAACCCTATAAACTTCAAACTGAAAATTGA GGAAAAATTAGAAAGGTCGCAAAAAAAAAAAAAAAAAAAAGAGCAAAAAAAAAAAAAAAA AGAGGGGGCTTTTACATTCTCCAAGTGTGCATTCTACAAATTCCAGTATCGTATCAGCAA ACAACGTACTTTTTTTTAAAACTTTTTCCTTTTAAGGACTTACAAAAAAAGAAAGGCGAG ATGAAATCTGCAGGCTCCAGTCTGCCTGGTAACACCCTGACAAAAGCGGCAGATTTGAGG CTGTGTCATCCCCCGCACCCCTCCCCACGTGGCCTTCTGGCACGAGCCGCAGGCCTGCCG CCTCATTTGCATCAGAAAGCGGGCGCTGGCCAATGGGAGTGCAGCCTCCCGCCAGCTGGC GGCGGCGCGCCGAGCCTGTCTATAAAAGGGCTCTCCCGGCCCAGCCTGGC
1	EXON 1	51,846,678	51,846,832	-	2	155	GCACTCGCTGGTGGTGGGCGCGCATCGGACTCTGGGAATCTTTACCTGCGCTCCGGTTCC CTCCGCACTCTTTTGGATAACTTGCTGTTCGTGGATCGCACAATGACTCTGGAAGAAGTC CGTGGCCAGGATACAGTTCCGGAAAGCACAGCCAG
	INTRON 1 - 2	51,846,833	51,847,351			519	GTGGGTTTTGGGGTGCCGAGAGTTG..........ACTCACGGCGCTTGTTCTTTCACAG
2	EXON 2	51,847,352	51,847,453	2	2	102	GATGCAGGGCGCCGGGAAAGCACTGCACGAACTTCTGCTGTCGGCGCAGCGCCAGGGCTG TCTGACCGCTGGCGTCTACGAGTCCGCCAAAGTCCTGAATGT
	INTRON 2 - 3	51,847,454	51,847,555			102	GTGAGTGTAGAAAGGCCCCGCGTGC..........CTTGTCCTTCCCATCTGCTCTGCAG
3	EXON 3	51,847,556	51,847,769	2	0	214	GGACCCTGACAATGTGACCTTTTGCGTGCTGGCTGCCGATGAAGAAGATGAGGGCGACAT AGCGCTGCAGATCCATTTCACGTTGATTCAGGCGTTCTGCTGTGAGAACGACATTGATAT CGTGCGCGTGGGAGACGTGCAGAGGCTGGCGGCGATTGTGGGCTCCGACGAAGAGGGGGG CGCGCCGGGAGACCTGCATTGCATCCTCATTTCG
	INTRON 3 - 4	51,847,770	51,847,868			99	GTGAGTGTCCCCCACTGTTTCCCTA..........GTATTTTTTTTTTTTTTAAATTCAG
4	EXON 4	51,847,869	51,848,468	0	-	600	AATCCTAATGAGGACACATGGAAGGACCCTGCCTTGGAGAAGCTCAGTTTGTTCTGCGAG GAGAGCCGCAGCTTCAACGACTGGGTGCCCAGCATCACCCTTCCCGAGTGACAGCCTGGC AGGGACCTTGGTCTGATCGACTTGGTAACACTCTAGCGCGCTGCTGGCTCTGGAGTGGCC CTCCGAGGGCGCTCGAGTGCGCATGGAGACTGGCAGGCGATGTTGCCTGGAGAGCGAGGA GCGCGACCTCCCAAGAAGGGGGTCTGGCGGCAGCGGGGACACCTTGTTCCGAGCCCAGGA CTCTGCCAGTGTCCGGAGAGGCTGCTAGCACAGGAAGGCCTAGGCGAGGACGTTGGCCCC AGGGCCGGGAAGAACCGACCAGCGAGGCAGGTGTGACTCAGCAAGCAGCCTTCCAGTGAA AGGAGGGGAAAGAAAGGCAGGCGACCGCCTGGACTTGGTACAGCGGCAGGAGCGGCCACT GCAGGAGCGAGCTGGACTTAGCCGACTGCACTGCTCTTTCAAAAAACGGATCCCGGGCAA TGCTTTCATTTTCTAAAGGACGCTATCGTGGAAGCTTTGAATATCACAATAAACTTATTG
	3' upstream sequence						AAACAAACTTAATGCCTTTTTATTGAGGGTAGGGGATTCTAATGGGGAGGGGGCGGCGGT AAAGGATGTTTCACAGCACCTGGGACCACCTTTCTGTTGGGGCAAGAAACTGCAGCCTCC TGGGGCTGGCGGTGGGGGAGGGGGTGCAGGCGAGTAGTAAACGGGAGAACTTGGGCCAGA GTACTGTTTGAGCCTTTCAGGAAGATTTCAAACTTGCAAGACAGGAGCATACTTGATAAG GCATCCGGGTGCAGGAGCTCCAGGCTTGCAATCCAATCCGATAACAGTGACTTCTGCCTC CAGTACCTCCCCTCCCCCGCTCCGCCCCCTCCCCCCACCTTTGCCTCGACAGCTGCTTAT CTGAACAGCTTGCGGGAGGCCCTGTGCCTTCCAATACAATGAGCTTGCCTCTGCAGCTCT GCCCTTGGTGCGGTGGCTGGGGATGGGGGCGGGTTGCTCTAGCTTTCAGGAACTTTCTCC TTTTAATTGCTCTGACAAAGCTACGCTACTAAAGTATTAATATCAAATATGACACCAGCG AGTTGCGTTCTCAGTATGAATCATCATTTTGTCACAGCCGTGATGGAAGTTACAGTATCT TAGCAGAAGTTGCAAGGCACCGTCTATTATAAATAGGAGTGAGCCAGTCTGAGTGGGGTG GGCATCTGCTAGTTCCTATTCTCAGGGCTTCTGCCCACCACATCAGTGAGGGCTGCTGCT CTCCACAATTCTTTTTAAAGTCGGAGGACAAACTCACCGGAGCCAAGATTATCTTTTGAG AAGGATCTGGGGGGTGGGGGAAACGTCCCAGTGAGAGGACTTTTTCTGTAGCTTAGTGCT TCTGGCTTTCACTGCGCATTCCAGGCCGTGCTGACGGATGGGGGGGGGGGGGGGGGGAAG CCCACGTGGGGCTTTCTTGCTGTCAGCTCTGCTGCCGGGCAGAGCTGGAGCCTTCGGGGA AGGGCGGGGTGGGGTGCTGTTTTTCTAAGAAGGCCATTGG..........

Sequence Detail Report

Gene Symbol (Gene ID)	Gadd45g (ENSMUSG00000021453)
Transcript ID	ENSMUST00000021903

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 160 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information