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Target CDS Information

Gene Symbol (Gene ID) Auh (ENSMUSG00000021460)
Cross Reference
CCDS CCDS26518.1
GO GO:0003730, GO:0004300, GO:0004490
MGI_trans_name Auh-001
OTTP OTTMUSP00000032438
OTTT OTTMUST00000065168
RefSeq_mRNA NM_016709.2
RefSeq_peptide NP_057918
UCSC uc007qnd.1
UniParc UPI0000185E48
Vega_transcript Auh-001, OTTMUST00000065168
Vega_translation 214467, OTTMUSP00000032438
Definition protein_id:ENSMUSP00000021913
translation:
MAAAAPGALGALRTVGVRLVAACCARLGPAAWARGTAPRRGYSSEVKTEDELRVRHLEEE
NRGIVVLGINRAYGKNALSKNLLKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKE
RAKMHSSEVGPFVSKIRSVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKM
GLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQNQEGD
AAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIEEACYAQTISTKDRLEGL
LAFKEKRPPRYKGE

Chromosome 13
Length
Position(start - end)
94,166
52,835,474 - 52,929,641
Orient to Chromosome minus
Link Location : (13:52835474-52929641)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Auh (ENSMUSG00000021460)
Transcript ID ENSMUST00000021913
Reports
substitution
cSNPs7
Insertion47
Deletion89
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num6
non-synonymous num1
synonymous substitutions 52838131 (p.Val274Val), 52840952 (p.His231His), 52841003 (p.Ser214Ser), 52889161 (p.Asp155Asp), 52889185 (p.Pro147Pro), 52929606 (p.Leu12Leu),
non-synonymous substitutions 52929598 (p.Val15Gly),
B6 transcript
(ENSMUST00000021913)
MAAAAPGALGALRTVGVRLVAACCARLGPAAWARGTAPRRGYSSEVKTEDELRVRHLEEE
NRGIVVLGINRAYGKNALSKNLLKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKE
RAKMHSSEVGPFVSKIRSVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKM
GLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQNQEGD
AAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIEEACYAQTISTKDRLEGL
LAFKEKRPPRYKGE*
MSMv4 transcript
MAAAAPGALGALRTGGVRLVAACCARLGPAAWARGTAPRRGYSSEVKTEDELRVRHLEEE
NRGIVVLGINRAYGKNALSKNLLKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKE
RAKMHSSEVGPFVSKIRSVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKM
GLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQNQEGD
AAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIEEACYAQTISTKDRLEGL
LAFKEKRPPRYKGE*
homology99.68 (315 / 315)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Auh (ENSMUSG00000021460)
Transcript ID ENSMUST00000021913
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GCTTTAGTGGTCTGCCTGCTTGTTTGCGTGAGGGTGCCAGATCCTCTGGA
ACTTGATTTACAGACAACTCTGTGCTGCCATGCAGGTGTGGGGAATTGAATTTGGGGGTC
CTCCGGAAGAGCAGCAAGTGCTCTTAACCACTGAGCCATCTCTCTAGTCCTTATACCGGA
ATTTATATGGCCAGAGTGTAATTTGCTTGTCTGGAAGGACAGGGAATACTCTAAGGAGAC
ATTCTATCTCTTCCTTTAGATTCAGACTAGGAAGGCTCGCTCCTCAGGGGACTGGAAAAT
CTCCACTCCCAACCCCCCCCCCGCCCCCCCCCCCAGTGGAGAAGGAAAAGCTTAAATTTC
TCACAGATAGTGCTGGGTCAAAGATGAAAGGGACCACACATTAACCTGGGCCTGGCTATG
CATGATTTTGGCTCTCTACTTCAACTTGTGTGAGGCTTCTGTCTAAAGATAAGTTCCTCC
TCTGACTGGTCCTAAACTTCCCCATCTTCACCTGGGATTCAGGGAAGAGAGGAGGGAGTC
CCCACTGTTTTTTTTTTTTTTTTTTTCTTTTTGAGACAGGGTTTCTATGTCTCTGTCAGA
CCAGGCTTGCCTCTGCCTCCCAAGTGCTGGGACTAAAGGTGTGTGCCACCACCGCCAGGT
GGGAGTCCCCACTGTTAAAGACCTTGTGGATTTCAACAATCTGATGATACACAGGGGAGG
GGAACAAGGGTCTGTCTTTCGAGTATCTTCCTTCCTTCCGGGATGGTCAGTCACAAGCCT
ACTATGGACCAAGTGCATGGAGGCAAGACCCTCTTGTCCTCTTCATTTAAGCGTTTCCAC
ACTTTAAAGATGCCTCTCCTTTTCTGAGCTGGCAAAACATTAAAGCTACCCAGGCGACCT
AGGCAAAGAGTGCCTGGGCGGGGCCAGACAACGAGGGGCGGGGCCAAAGCGACCGACGCC
TGTCGTGTGCGTGCGCGGCTCCAAGCGGGGGGCGGAGTCTGGCCACGGGC
1 EXON 1 52,929,455 52,929,661 - 1 207
GCCCGCTGTAAACATACAACATGGCGGCGGCGGCTCCAGGCGCTCTGGGCGCCTTAAGAA
CGGGTGGCGTCCGCCTGGTGGCCGCGTGCTGCGCGCGGCTCGGCCCCGCGGCCTGGGCTA
GGGGTACCGCCCCGAGGAGGGGCTACAGCTCGGAGGTGAAGACGGAGGATGAGTTGCGCG
TGCGGCACCTGGAGGAGGAGAACCGAG
INTRON 1 - 2 52,919,267 52,929,454 10,188
GTGAGCTGCAGGCAAGCGCGGGCGA..........GTCCTTCTTCTCCCTCCCTAACCAG
2 EXON 2 52,919,199 52,919,266 1 0 68
GCATTGTGGTGCTCGGGATTAACAGAGCTTATGGGAAAAATGCACTCAGTAAAAATCTCC
TCAAGATG
INTRON 2 - 3 52,919,089 52,919,198 110
GTGAGTGGAAGACTACGCTGTTTGC..........CCCCCTCCCCCCTATCTTGGTTTAG
3 EXON 3 52,919,001 52,919,088 0 1 88
TTATCAAAAGCGGTGGATGCATTAAAGTCAGATAAGAAAGTTCGGACCATTATCATCAGA
AGTGAAGTCCCTGGGATATTCTGTGCTG
INTRON 3 - 4 52,898,737 52,919,000 20,264
GTAGGTAAAATAATCTCCTGTTGTC..........CTCATCTGAATACGATGTCTTGTAG
4 EXON 4 52,898,650 52,898,736 1 1 87
GTGCTGACCTTAAGGAACGAGCCAAGATGCATTCCAGTGAAGTTGGTCCCTTTGTCTCCA
AGATCCGATCGGTGATCAATGACATTG
INTRON 4 - 5 52,889,196 52,898,649 9,454
GTAAGCACAGCTATGCTGAGGGTGG..........AGGAGATAAACTTTGTCTGTTTCAG
5 EXON 5 52,889,103 52,889,195 1 1 93
CAAACCTCCCCGTGCCCACCATCGCAGCCATAGATGGCCTTGCCCTCGGAGGGGGTCTGG
AGCTGGCTCTAGCGTGTGACATTCGAGTAGCAG
INTRON 5 - 6 52,887,298 52,889,102 1,805
GTGAGAATTTAATCCTGTTAACATA..........CTTAATTCTCTTTATTTCTTTTTAG
6 EXON 6 52,887,241 52,887,297 1 1 57
CTTCCTCTGCAAAAATGGGCCTGGTTGAAACAAAGTTGGCAATTATTCCTGGCGGAG
INTRON 6 - 7 52,841,065 52,887,240 46,176
GTATGAATTGCTCACTCTTCGTCTC..........CTGTCTTTCTCCTCTCCCCCTTCAG
7 EXON 7 52,840,877 52,841,064 1 0 188
GAGGGACACAGAGATTACCACGTGCCATCGGGATGTCCCTGGCTAAGGAACTCATCTTCT
CCGCCCGAGTTCTTGACGGTCAAGAAGCCAAAGCTGTGGGCTTGATCAGCCACGTGTTAG
AACAGAACCAGGAAGGGGATGCAGCCTACAGGAAGGCGCTGGACCTGGCGAGAGAGTTTC
TACCTCAG
INTRON 7 - 8 52,839,609 52,840,876 1,268
GTACTGTGAGAGCACCTGTGTGTGT..........CTTTCTTCTTTACTTTGAATTTCAG
8 EXON 8 52,839,558 52,839,608 0 0 51
GGGCCTGTTGCAATGAGAGTGGCCAAACTAGCAATTAACCAAGGGATGGAG
INTRON 8 - 9 52,838,134 52,839,557 1,424
GTGAGTGCTGATGGGGAAGGTGGCT..........GAAATGAACTATGTTTTCTCCTCAG
9 EXON 9 52,838,086 52,838,133 0 0 48
GTTGACTTAGTAACAGGGTTAGCCATAGAAGAAGCCTGCTATGCTCAG
INTRON 9 - 10 52,835,552 52,838,085 2,534
GTATGTAACATGGTGACAGATCCAG..........GTGTGTGTCATGTTTTGTCTCTTAG
10 EXON 10 52,835,119 52,835,551 0 - 433
ACCATCTCAACAAAGGACAGACTGGAAGGTCTTCTTGCTTTTAAGGAGAAAAGACCTCCT
CGCTACAAGGGAGAATAGGAGGAGAGCCCGCCGCAGCCTCCCATAGTGCTGGAAGTGGTT
CAGAGCCGCCCCGTGCCGCCACGGGAAATCGCAGTGACCAAAGTGGAGAGTGGGTTCTCA
CTACACCCGGAGCAGGCCCATCTGTACTCAAGCCACTGTGCGCCATGTCATATTTATTCA
GATTTATAAAGCTAGCAATGTCCGTGGTCAAAACACGTAAAAATTAGGTGTATGTTTTTA
ATATTTCCCGCATATCAGGCTTTGTCGTTAATTTTTTAATGTGAATAATTTATATTGCAC
ACTCTAGGGAATAATTGATTGTATGTCTACCATGCTGCATTAAGAAAATAAAACTATTTC
TGTATCCCAAAAA
3' upstream sequence
TGTGAAGTTATACCAAATGTAGTTGCTGAGTAATTATGTACATGCGAGCATACACATGTG
TGTACATAGGAACACACACGTGTGCATGCACAAACACACACACACACATGTGCTACGAGC
GTACAAATGCCCATCACCACCAGAGGACCTGGGTGGACAGTCTGAGGGAAACCCCTCTAG
TTTCAATAAAGCCAATGGAGAGTGATTTGAGAATCCGTGTCTTGCCCCTTGCCCAACATT
TCAGAACAGATTTCAGAGTAAAGTCTCTTTGCTGACCCTGCCGAGGAACCATGTGACACG
GTCCCAGAACAGGGGTGAAGGGTCAGCCCATCAGTGGTTCTGCTTGGCTTCAAGCCACAG
TGTCTTCGGCAGAGGTGTCCCGGGCTGGGCCTGGCTGTGCTTTCACAGAGCTTGATGCTT
GCTGAAGACTGCAGTGGGCCTCCTGTCCCGCCACACACATGCATCCTGCATTCCCTTCCC
TCCCACCACACACATGCATCCTGCATGCCCCTCCCTGCTGCCCTGCCCTCACATCCTCAC
CCTGAGCCTGCTCTGCTGTTTGGGAGTGCACTGATGTGATTCTTAAATTTCTCAAGAGAG
AACAATGGCACCAGCCACCACCTCTGCCACTGAGCTGCAGATCAGAACGTCTATCCGTCT
ATCTGCTAGCCCAGCTAACCAGCTGACCCCCCCCCACCCCCACCATCTGATGTCAGACTG
CCACACCCTTGATCTTCAGCCTGAAACCTTGGCCAGGGGGGTGACTGTCCTTCAGACTTC
CCAGGGTCATGTCTTGTCTGTCCACGACACGCTGAACATCTCACATTTATTCTAACTGAG
CTGGAAATGGTACTGGTAATGGGAGAAGATGAGGATTTGGGGACCAGGTCAGCAGTTGAT
GATTGGTCACCACTTGGTTTCCTAACAAGTTGTGAAGCGGAGAGCAAAGTCCTATAGCAA
CTTGAGACAGGGAGGCAGCAGGATCAGGTGCTGGTCCTTG..........

Sequence Detail Report

Gene Symbol (Gene ID) Auh (ENSMUSG00000021460)
Transcript ID ENSMUST00000021913
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 315 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information