MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Sptlc1 (ENSMUSG00000021468)

Cross Reference

CCDS	CCDS26521.1
EMBL	AF003823, AK053207, AK079578, ...show all
Fantom	A230104F05, D230035O14, D230049O15, ...show all
GO	GO:0004758, GO:0005515, GO:0005515, ...show all
goslim_goa	GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name	Sptlc1-201
protein_id	AAC02264.1, AAH46323.1, BAC35310.1, ...show all
Reactome	R-MMU-1430728, R-MMU-1660661, R-MMU-428157, ...show all
RefSeq_mRNA	NM_009269.2
RefSeq_peptide	NP_033295

UCSC	uc007qnk.2
UniParc	UPI000000B9B7
Uniprot/SWISSPROT	O35704

Definition

protein_id:ENSMUSP00000021920
translation:

MATVAEQWVLVEMVQALYEAPAYHLILEGILILWIIRLVFSKTYKLQERSDLTAKEKEEL
IEEWQPEPLVPPVSKNHPALNYNIVSGPPTHNIVVNGKECVNFASFNFLGLLANPRVKAT
AFSSLKKYGVGTCGPRGFYGTFDVHLDLEERLAKFMKTEEAIIYSYGFSTIASAIPAYSK
RGDIIFVDSAACFAIQKGLQASRSDIKLFKHNDVADLERLLKEQEIEDQKNPRKARVTRR
FIVVEGLYMNTGTICPLPELVKLKYKYKARIFLEESLSFGVLGEHGRGVTEHYGISIDDI
DLISANMENALASVGGFCCGRSFVVDHQRLSGQGYCFSASLPPLLAAAAIEALNIMEENP
DIFAVLKKKCQNIHKSLQGVSGLKVVGESLSPALHLQLEESTGSREKDVKLLQAIVDQCM
DKGIALTQARYLDKEEKCLPPPSIRVVVTVEQTEEELQRAASTIREAAQAVLL

Chromosome

Length
Position(start - end)

43,464
53,333,884 - 53,377,349

Orient to Chromosome

minus

Link

Location : (13:53333884-53377349)
/

Detail Map

name	Sptlc1 (ENSMUSG00000021468)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Sptlc1 note : serine palmitoyltransferase, long chain base subunit 1 [Source:MGI Symbol;Acc:MGI:1099431]

name	Sptlc1 (ENSMUSG00000021468)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000021920

name	Sptlc1 (ENSMUSG00000021468) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS26521.1 Uniprot/SWISSPROT:O35704 RefSeq_peptide:NP_033295 RefSeq_mRNA:NM_009269.2 UCSC:uc007qnk.2 Fantom:A230104F05 Fantom:D230035O14 Fantom:D230049O15 Fantom:E030036H05 EMBL:AF003823 EMBL:AK053207 EMBL:AK079578 EMBL:AK084391 EMBL:AK084445 EMBL:BC046323 EMBL:X95641 GO:GO:0004758 GO:GO:0005515 GO:GO:0005515 GO:GO:0006686 GO:GO:0016021 GO:GO:0017059 GO:GO:0017059 GO:GO:0030170 GO:GO:0035339 GO:GO:0035339 GO:GO:0046511 GO:GO:0046512 GO:GO:0046513 MGI_trans_name:Sptlc1-201 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005783 goslim_goa:GO:0006629 goslim_goa:GO:0008150 goslim_goa:GO:0009058 goslim_goa:GO:0034641 goslim_goa:GO:0043167 goslim_goa:GO:0043226 goslim_goa:GO:0043234 goslim_goa:GO:0044281 protein_id:AAC02264.1 protein_id:AAH46323.1 protein_id:BAC35310.1 protein_id:BAC37690.1 protein_id:BAC39172.1 protein_id:BAC39185.1 protein_id:CAA64897.1 Reactome:R-MMU-1430728 Reactome:R-MMU-1660661 Reactome:R-MMU-428157 Reactome:R-MMU-556833 UniParc:UPI000000B9B7
definition	note : transcript_id=ENSMUST00000021920 protein_id : ENSMUSP00000021920 translation : MATVAEQWVLVEMVQALYEAPAYHLILEGILILWIIRLVFSKTYKLQERSDLTAKEKEELIEEWQPEPLVPPVSKNHPALNYNIVSGPPTHNIVVNGKECVNFASFNFLGLLANPRVKATAFSSLKKYGVGTCGPRGFYGTFDVHLDLEERLAKFMKTEEAIIYSYGFSTIASAIPAYSKRGDIIFVDSAACFAIQKGLQASRSDIKLFKHNDVADLERLLKEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLPELVKLKYKYKARIFLEESLSFGVLGEHGRGVTEHYGISIDDIDLISANMENALASVGGFCCGRSFVVDHQRLSGQGYCFSASLPPLLAAAAIEALNIMEENPDIFAVLKKKCQNIHKSLQGVSGLKVVGESLSPALHLQLEESTGSREKDVKLLQAIVDQCMDKGIALTQARYLDKEEKCLPPPSIRVVVTVEQTEEELQRAASTIREAAQAVLL

name
type	STS
link
xref	UniSTS_NUM:162944 UniSTS:C77762 UniSTS:RH126236
definition	note : map_weight=1 standard_name : RH126236

name
type	STS
link
xref	UniSTS_NUM:180534 UniSTS:AW552086 WI_MRC-RH:968668
definition	note : map_weight=1 standard_name : AW552086

name
type	STS
link
xref	UniSTS_NUM:127238 UniSTS:D14Mit131.1
definition	note : map_weight=2 standard_name : D14Mit131.1

name
type	misc_feature
link
xref
definition	note : contig AC159201.2 1..148234(-1)

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Sptlc1 (ENSMUSG00000021468)
Transcript ID	ENSMUST00000021920

Reports
substitution
cSNPs	2
Insertion	12
Deletion	12
SNPs	+1kb 53378766(c.-1417T>A), 53378812(c.-1463G>A), 53378816(c.-1467G>A), 53380793(c.-3444A>G), 53380976(c.-3627G>A), 53381290(c.-3941A>G), 5'UTR CDS 53367381(c.358A>G), 53377335(c.15G>A), 3'UTR INTRON 53338565(c.1137-840A>C), 53338998(c.1137-1273G>A), 53339658(c.1137-1933C>T), 53343723(c.984+56C>T), 53345374(c.781-466G>A), 53345693(c.781-785A>G), 53346135(c.781-1227G>A), 53350261(c.780+1340T>G), 53353315(c.690+836T>A), 53353583(c.690+568G>A), 53354707(c.561-427C>T), 53361532(c.428-2639G>A), 53363931(c.427+3381G>C), 53365989(c.427+1323T>C), 53366426(c.427+886T>C), 53369779(c.261-1820T>A), 53370315(c.261-2356T>A), 53373845(c.165+117T>C), 53376032(c.57+1261T>C), 53376886(c.57+407A>T), -1kb 53328230(c.5654C>T), 53328267(c.5617A>C), 53328686(c.5198T>C), 53329299(c.4585T>C), 53331209(c.*2675A>G),
Insertions	+1kb 53378498 (c.-1150_-1149insTGTG), 5'UTR CDS 3'UTR INTRON 53336422 (c.1255-1009dupA), 53336428 (c.1255-1015_1255-1014insA), 53336464 (c.1255-1051_1255-1050insAAGAAC), 53339061 (c.1137-1337_1137-1336insGGGTTG), 53344367 (c.888+433_888+434insGTGTGT), 53346355 (c.781-1448dupA), 53348234 (c.781-3330_781-3327dupGATA), 53351802 (c.691-113_691-112insTT), 53365636 (c.427+1671_427+1675dupATTTT), -1kb 53330164 (c.3719_3720insA), 53330996 (c.2887_2888insA),
Deletions	+1kb 53377427 (c.-80_-79delCC), 53378047 (c.-699delT), 53378946 (c.-1601_-1598delCACA), 53381722 (c.-4374delA), 5'UTR CDS 3'UTR INTRON 53338032 (c.1137-308delC), 53360885 (c.428-1995_428-1993delGGG), 53363908 (c.427+3403delT), 53369141 (c.261-1185_261-1183delTTC), 53376051 (c.57+1241delA), -1kb 53329244 (c.4638_4639delTT), 53329555 (c.4323_4328delCACACA), 53331264 (c.*2619delA),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	1
non-synonymous num	1
synonymous substitutions	53377335 (p.Ala5Ala),
non-synonymous substitutions	53367381 (p.Thr120Ala),
B6 transcript (ENSMUST00000021920)	MATVAEQWVLVEMVQALYEAPAYHLILEGILILWIIRLVFSKTYKLQERSDLTAKEKEEL IEEWQPEPLVPPVSKNHPALNYNIVSGPPTHNIVVNGKECVNFASFNFLGLLANPRVKAT AFSSLKKYGVGTCGPRGFYGTFDVHLDLEERLAKFMKTEEAIIYSYGFSTIASAIPAYSK RGDIIFVDSAACFAIQKGLQASRSDIKLFKHNDVADLERLLKEQEIEDQKNPRKARVTRR FIVVEGLYMNTGTICPLPELVKLKYKYKARIFLEESLSFGVLGEHGRGVTEHYGISIDDI DLISANMENALASVGGFCCGRSFVVDHQRLSGQGYCFSASLPPLLAAAAIEALNIMEENP DIFAVLKKKCQNIHKSLQGVSGLKVVGESLSPALHLQLEESTGSREKDVKLLQAIVDQCM DKGIALTQARYLDKEEKCLPPPSIRVVVTVEQTEEELQRAASTIREAAQAVLL*
MSMv4 transcript	MATVAEQWVLVEMVQALYEAPAYHLILEGILILWIIRLVFSKTYKLQERSDLTAKEKEEL IEEWQPEPLVPPVSKNHPALNYNIVSGPPTHNIVVNGKECVNFASFNFLGLLANPRVKAA AFSSLKKYGVGTCGPRGFYGTFDVHLDLEERLAKFMKTEEAIIYSYGFSTIASAIPAYSK RGDIIFVDSAACFAIQKGLQASRSDIKLFKHNDVADLERLLKEQEIEDQKNPRKARVTRR FIVVEGLYMNTGTICPLPELVKLKYKYKARIFLEESLSFGVLGEHGRGVTEHYGISIDDI DLISANMENALASVGGFCCGRSFVVDHQRLSGQGYCFSASLPPLLAAAAIEALNIMEENP DIFAVLKKKCQNIHKSLQGVSGLKVVGESLSPALHLQLEESTGSREKDVKLLQAIVDQCM DKGIALTQARYLDKEEKCLPPPSIRVVVTVEQTEEELQRAASTIREAAQAVLL*
homology	99.79 (474 / 474)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Sptlc1 (ENSMUSG00000021468)
Transcript ID	ENSMUST00000021920


..........TCCACCCCAAAGTAATGGGTGCTGGGGATGGAGCTCTGACCCTCTTTACT
GACTGAACTCTCTCTCTCCAGACTCAGTTTACTTCTCCCCCCCTCCACCCCCGCCCTTTA
AAAAGTAAAATTGCTGTGTCAATGGCAGTTCCGGACAAGTCTCAGGAAATGCAAATTGGT
GTGCAGATAACATTTGTTATCTAAATGTTTGTAGCAGCCTTTGACCATACTACACCTGGA
GAATAACCAGACATACACTATTTAAATACTACTCCCTGACTCCCCTCTCTGAGGATCAAA
CTTTTACATATCTGTGATTTTTTTTTTTAATAATGCTGCATGACTGGATTGCGTGTTACT
TAAAAGGGAAGGCTATGTTTCGTTATTATTATTATTATTATTATTAGTTTTGTCGAGGCA
GGGTTTCTCTGTGTAGCCCTGACTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCG
AACTCAGAAATCCGCCCGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCGCTACCA
CCACCTAGCTCATGTTTTATTTATTTATTTTTTACTTTGTATTTGTTTGTGTTTTGAAAC
AGGTTCTCACTGTGTAGCCCTGGCTGGTTTGGAGTTGGTCATGTGGAGCAGGTTAGCCTA
AAGAGAACTCAGGAGACCCTCCTCCTTTTGCCTCCCAAATACGATTTAAGGCCTGTACCG
CCATGCCCGGCCTAATTTCGTTCATCTTAATAACTCTGGGCCCAGACGACTGCCCAGGAC
AAGGACCACGAGCTAATTCTCCTAGCACAAAGTCCACGGCCTGTCGCTATACAAGTCTCA
GGGATTCTGTCTTTACCAATCGAGTCCAAGCACTTCACACCCGAACGAGCACACCCGAAC
GAGGAGGCCCCGCCCCACTTCCGGCAGTCCCGCCTCTCCCCCCCCCCCGCTTCATTGCGT
CACTAGCTCGCGCCGCGCACTATTTGACACGCTGCGACCCGCCTGCCGGA
AGTCGGCTGCCTGACCATGGCGACAGTGGCAGAGCAGTGGGTGCTGGTGGAGATGGTGCAGGCGCTGTACGAG
GTGCGTTCGCCACCGGAGCCTCCCG..........TTTGTCTTGCTCTTCTCCCTCACAG
GCTCCAGCATACCATCTTATTTTGGAAGGAATCCTAATACTTTGGATAATCAGACTCGTTTTCTCTAAAACTTACAAGTTGCAGGAGCGTTCTGATCTTACAGCCAAG
GTAAGAAATGAAGCTTGTTTCACTC..........CACTCTAACACCAGTTCTTCTGCAG
GAAAAGGAAGAACTGATTGAAGAGTGGCAGCCAGAGCCCCTCGTCCCTCCAGTCTCCAAGAACCACCCTGCTCTCAACTACAACATCGTGTCCGG
GTAACTATCTGCTCAAGCCCGGGAA..........AACCTCTCCCCTGTCTTTTCCCCAG
CCCTCCAACCCACAACATCGTGGTGAATGGAAAAGAGTGTGTCAACTTTGCCTCCTTTAACTTCCTTGGGCTGCTGGCCAACCCTCGAGTTAAG
GTGAGTAACAATGAATGCCGAAGTG..........TCATTGCATGTTTACTTCCATACAG
GCCGCAGCTTTTTCATCTTTAAAGAAGTACGGAGTGGGTACCTGTGGTCCTCGAGGGTTCTATGGCACATTTG
GTAAGTGCATTTTGTCAGACTCCAT..........TGTTTTCACTTTTGTCTTAAAATAG
ATGTCCATCTGGATTTAGAAGAGCGCCTGGCAAAGTTTATGAAGACCGAAGAAGCCATCATTTACTCGTATGGCTTCTCCACCATAGCCAGTGCCATTCCTGCGTACTCTAAGAGAGGGGACATCATCTTTGT
GTAAGCGCTCTCACCTGCACTCCTG..........AATTTGGTGCCTCTCTTCCTTGCAG
GGACAGTGCGGCCTGCTTTGCTATCCAGAAAGGATTACAGGCATCAAGAAGTGACATTAAGTTATTTAAGCATAATGATGTGGCTGACCTGGAGCGACTGCTAAAAGAACAAGAGATTGAAGATCAAAAG
GTAGGATCCTTTTGAAGGAAACTGT..........GTCTGGTTTGTTTGGTTTGTCGTAG
AATCCTCGCAAGGCCCGTGTGACTCGGCGGTTCATCGTGGTGGAGGGCTTGTACATGAACACTGGAACCATCTGTCCCCTTCCAGAACTG
GTGAGTCCCTGCGGTAGTGTGCTGA..........TTACTTTGGTCTTTTTTAAAACTAG
GTTAAATTAAAATATAAATATAAAGCAAGAATATTCCTGGAGGAGAGCCTGTCCTTTGGAGTCCTTGGGGAGCACGGGCGAGGAGTCACCGAGCACTATGGGATCAGT
GTGAGTTCTCTCACTGGGAGCTCCC..........ACTGGCTTTCTGTTTTTCCTGATAG
ATTGATGATATTGACCTTATCAGTGCTAACATGGAGAATGCACTCGCTTCTGTCGGGGGCTTCTGCTGTGGCCGCTCCTTCGTGGTTGACCATCAG
GTGATGCCTCTTAGAAATGATGCAC..........CATCTTTGTCTTTGTTTCTCCTTAG
CGGCTCTCCGGTCAAGGATACTGCTTTTCTGCTTCGTTACCTCCCCTGCTAGCTGCTGCTGCCATTGAGGCCCTCAACATCATGGAAGAGAATCCAG
GTAACAGTGCTAGGAAAGGTGGGGA..........CATCAAACTTTTCTTTTCAACGCAG
ATATTTTTGCAGTTTTAAAGAAAAAATGCCAGAACATCCATAAGTCTCTACAAGG
GTAAGTGTATGGCTTCCAGCCAGCA..........ATGTCACGTGTGTTTGTTTCTCTAG
TGTTTCGGGTTTAAAAGTGGTGGGAGAGTCCCTTTCTCCGGCGCTTCATCTCCAGCTGGAAGAGAGCACGGGCTCTCGGGAGAAAGATGTGAAGCTGCTTCAAGCAATCGTAGATCAG
GTAAGTATACAGTTATACAGTCGGC..........TGTTCTGTCCCCTTTCTCCCTGCAG
TGCATGGATAAGGGCATCGCATTGACTCAGGCACGGTACTTGGACAAGGAAGAGAAGTGCCTTCCTCCTCCAAG
GTTGGTGAATATTAAAAGGGCAGTG..........TGTTCCTGTGCTTTGTCTTTCTCAG
CATCAGGGTTGTGGTCACTGTGGAGCAGACGGAGGAAGAGCTACAGAGGGCTGCATCCACCATCAGGGAGGCGGCCCAGGCTGTGCTGTTGTAGGCTCCTGCCCAGTGCTTCAGCCATGTCACCTGCGGACGGAACTACTCAGAGACCTCCAGCTGCCCAGGGTGTGGCTGTGCTTGAATACACAGCCAGAGTGGATGGTTGTATCCAGCAGGAGCTGACTTGTAGAGGATGACAGATGACAGCATATCCCTGGTGTTTCTGCAGTGCCGTGTGCTCTGTCAGGATGCTTCACTGTCATTTGTATTCGCTTTTGTTTAAAACTGGAGCTTCCATTTTCCCTCTGTCGTCTGTGGGAATGATTCAATAAGCACTTCTCCGTATCCATAGAAAAGGACTTTGCAGCTAAGAGGGACTCTCCATGTATCCAGTTACTGTGGGAGACTGAGAGACTGTGTCCTCCCCTGTCCTCAGGCAGAGCTCAGTGGTGGCTGCTATGCAGATACTCTGTGTGTGTTATAAACGTCATACAACATGGTGATCCTAGGACTCTATGTGCTCCAGTTACTGATACTGTCCTGTCTAATCTGAGCTTCACTAACAGATCTTCATACCGCTTCCTAAGCAATAATCTGAATCAAACGTTATTTTATTTTTGTGTAATTGACTTTATATTTTTTATATATTCTCTAGTCAGTTTTGGGAAGAGGGTTATTATTCTGATCCCCAAATACAAATCATGCCCTTGGTATTTTCTAATATGTCCAATGTCCTTTTTCATGGTGGTTTTGTCCAGGAGCATAGACCTGTGGGCTTTTTCTAAGCTGAGAAAAATGAGACCTTTCCTCTTTCACTCTATAAATTCCAGATGCCTCCGAAAAATAGGGATGCTCTAAACGTGATTTCCGAGCTCTACACTGGCTGCCGTTGTCCTTAGCGAGCGTGTTGAGTGATATAAAGGCTTGTGACATGTGCCACGGATCGTGTGCATGGAAGGCCTTCTCTTGTTGCACGGGCAGAGGAGTCAGGTCATTTAAATGTCATTTTCTGATGTGCGTTCATGTGAACCATGGGTCGGCATCTTCTTAAGTGATCTGTGACATTTTTAATGTTTCTATTTCATACGTGCCTTGTGATTGCTGCTGCTGTGAGGGTACACTCCTGTCGGGGAAAAGTCTGTTTTGGTTTGGTTTTTAATGAAATAAACCTCCAAGAGCTTACATTCCTGAAAAGGAGTCTGTTTGGATAGCAGCTTGCTCAGCTC
AGCAGTCTCTTGATTTTAACCTTCATTTTCCCCTGTGTGTTTTTCTTTTGTTTTAGAACA
TAACTAAATTTCTTAGTCCCTTCTTCCAGCCCAACCAAAGACTATGTACTATCTCAAAAT
TCGTAGGTTCCTTCTGATTGAACACTGTCTACTTCGGACTATAAGAAGGCTGGAGTGGGG
CCAGAAGACTTAGCTCCATGGGAGAGTTCTTGCCTGCCAAACACAGGCCCTGGGTTTGAT
CCTCAGCTGGGGAAGGAAGCTTGGCTAAGTGGCAGGGCAGTTGCCTCTAATCGCTGGGAA
GAGGCGGCCCAGAGGCAGCACAGCGCCTTAGGTGCTGGCCACCATCTCTGTTGGTGTACT
CCCCCAGCTTCCCATGAAACCATCCCATGTCCTTCACCATGGAGCCCACACAGAACCAAC
ATGAAGTTCAAGCCTCAGGATCCCTGTGGCCCCTGGGTCAGACCCAGTTACCATGTCGTG
GGGGTCGGCGGACTTCTGGGGAGACGTGAACAGACATCTATTCACCTCAGACAAGACACC
AACAAAAGACCAAGGGAACAGCTCACTCTTATCTAGCTTAGTAGACAAGTGGCTGATTGC
AGCTAACTGTAGGAACACAGCAAACTAGAAAAATGCTAGCTGCTTCTATATCCTTAGGGG
GGACTGGGGCCTCATGAGCCCAGGCCCACCTCATGACAGACTGTTAAAGGCTCAAGTCTA
TGTGGTCTCACGGTGGCATTCACAGCTTCAGGAGAACAATGAGCACATCATTTCTGGGGA
CATCACATTAGCTAGCACACGTCAGTTCTCCACAAGGGAGGTGAGTTGACACTGAAAAGT
TATCGGATCACCTCAAGGCTCAAGCTTAACAAACTCCAGGTTAGACAAGACAACGAAATA
CTAGGTGCAGCTCGGTCAGCCCACTGTAAACACCAAAGCCACTGCATGCAAAAGATCAAA
GTTCAAGTAGGGCCAAGTTCGCTGGGAAGTGGGCAACTAA..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........TCCACCCCAAAGTAATGGGTGCTGGGGATGGAGCTCTGACCCTCTTTACT GACTGAACTCTCTCTCTCCAGACTCAGTTTACTTCTCCCCCCCTCCACCCCCGCCCTTTA AAAAGTAAAATTGCTGTGTCAATGGCAGTTCCGGACAAGTCTCAGGAAATGCAAATTGGT GTGCAGATAACATTTGTTATCTAAATGTTTGTAGCAGCCTTTGACCATACTACACCTGGA GAATAACCAGACATACACTATTTAAATACTACTCCCTGACTCCCCTCTCTGAGGATCAAA CTTTTACATATCTGTGATTTTTTTTTTTAATAATGCTGCATGACTGGATTGCGTGTTACT TAAAAGGGAAGGCTATGTTTCGTTATTATTATTATTATTATTATTAGTTTTGTCGAGGCA GGGTTTCTCTGTGTAGCCCTGACTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCG AACTCAGAAATCCGCCCGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCGCTACCA CCACCTAGCTCATGTTTTATTTATTTATTTTTTACTTTGTATTTGTTTGTGTTTTGAAAC AGGTTCTCACTGTGTAGCCCTGGCTGGTTTGGAGTTGGTCATGTGGAGCAGGTTAGCCTA AAGAGAACTCAGGAGACCCTCCTCCTTTTGCCTCCCAAATACGATTTAAGGCCTGTACCG CCATGCCCGGCCTAATTTCGTTCATCTTAATAACTCTGGGCCCAGACGACTGCCCAGGAC AAGGACCACGAGCTAATTCTCCTAGCACAAAGTCCACGGCCTGTCGCTATACAAGTCTCA GGGATTCTGTCTTTACCAATCGAGTCCAAGCACTTCACACCCGAACGAGCACACCCGAAC GAGGAGGCCCCGCCCCACTTCCGGCAGTCCCGCCTCTCCCCCCCCCCCGCTTCATTGCGT CACTAGCTCGCGCCGCGCACTATTTGACACGCTGCGACCCGCCTGCCGGA
1	EXON 1	53,377,293	53,377,365	-	0	73	AGTCGGCTGCCTGACCATGGCGACAGTGGCAGAGCAGTGGGTGCTGGTGGAGATGGTGCA GGCGCTGTACGAG
	INTRON 1 - 2	53,374,070	53,377,292			3,223	GTGCGTTCGCCACCGGAGCCTCCCG..........TTTGTCTTGCTCTTCTCCCTCACAG
2	EXON 2	53,373,962	53,374,069	0	0	108	GCTCCAGCATACCATCTTATTTTGGAAGGAATCCTAATACTTTGGATAATCAGACTCGTT TTCTCTAAAACTTACAAGTTGCAGGAGCGTTCTGATCTTACAGCCAAG
	INTRON 2 - 3	53,373,424	53,373,961			538	GTAAGAAATGAAGCTTGTTTCACTC..........CACTCTAACACCAGTTCTTCTGCAG
3	EXON 3	53,373,329	53,373,423	0	2	95	GAAAAGGAAGAACTGATTGAAGAGTGGCAGCCAGAGCCCCTCGTCCCTCCAGTCTCCAAG AACCACCCTGCTCTCAACTACAACATCGTGTCCGG
	INTRON 3 - 4	53,367,960	53,373,328			5,369	GTAACTATCTGCTCAAGCCCGGGAA..........AACCTCTCCCCTGTCTTTTCCCCAG
4	EXON 4	53,367,866	53,367,959	2	0	94	CCCTCCAACCCACAACATCGTGGTGAATGGAAAAGAGTGTGTCAACTTTGCCTCCTTTAA CTTCCTTGGGCTGCTGGCCAACCCTCGAGTTAAG
	INTRON 4 - 5	53,367,385	53,367,865			481	GTGAGTAACAATGAATGCCGAAGTG..........TCATTGCATGTTTACTTCCATACAG
5	EXON 5	53,367,312	53,367,384	0	1	73	GCCGCAGCTTTTTCATCTTTAAAGAAGTACGGAGTGGGTACCTGTGGTCCTCGAGGGTTC TATGGCACATTTG
	INTRON 5 - 6	53,358,894	53,367,311			8,418	GTAAGTGCATTTTGTCAGACTCCAT..........TGTTTTCACTTTTGTCTTAAAATAG
6	EXON 6	53,358,761	53,358,893	1	2	133	ATGTCCATCTGGATTTAGAAGAGCGCCTGGCAAAGTTTATGAAGACCGAAGAAGCCATCA TTTACTCGTATGGCTTCTCCACCATAGCCAGTGCCATTCCTGCGTACTCTAAGAGAGGGG ACATCATCTTTGT
	INTRON 6 - 7	53,354,281	53,358,760			4,480	GTAAGCGCTCTCACCTGCACTCCTG..........AATTTGGTGCCTCTCTTCCTTGCAG
7	EXON 7	53,354,151	53,354,280	2	0	130	GGACAGTGCGGCCTGCTTTGCTATCCAGAAAGGATTACAGGCATCAAGAAGTGACATTAA GTTATTTAAGCATAATGATGTGGCTGACCTGGAGCGACTGCTAAAAGAACAAGAGATTGA AGATCAAAAG
	INTRON 7 - 8	53,351,691	53,354,150			2,460	GTAGGATCCTTTTGAAGGAAACTGT..........GTCTGGTTTGTTTGGTTTGTCGTAG
8	EXON 8	53,351,601	53,351,690	0	0	90	AATCCTCGCAAGGCCCGTGTGACTCGGCGGTTCATCGTGGTGGAGGGCTTGTACATGAAC ACTGGAACCATCTGTCCCCTTCCAGAACTG
	INTRON 8 - 9	53,344,909	53,351,600			6,692	GTGAGTCCCTGCGGTAGTGTGCTGA..........TTACTTTGGTCTTTTTTAAAACTAG
9	EXON 9	53,344,801	53,344,908	0	0	108	GTTAAATTAAAATATAAATATAAAGCAAGAATATTCCTGGAGGAGAGCCTGTCCTTTGGA GTCCTTGGGGAGCACGGGCGAGGAGTCACCGAGCACTATGGGATCAGT
	INTRON 9 - 10	53,343,875	53,344,800			926	GTGAGTTCTCTCACTGGGAGCTCCC..........ACTGGCTTTCTGTTTTTCCTGATAG
10	EXON 10	53,343,779	53,343,874	0	0	96	ATTGATGATATTGACCTTATCAGTGCTAACATGGAGAATGCACTCGCTTCTGTCGGGGGC TTCTGCTGTGGCCGCTCCTTCGTGGTTGACCATCAG
	INTRON 10 - 11	53,343,225	53,343,778			554	GTGATGCCTCTTAGAAATGATGCAC..........CATCTTTGTCTTTGTTTCTCCTTAG
11	EXON 11	53,343,128	53,343,224	0	1	97	CGGCTCTCCGGTCAAGGATACTGCTTTTCTGCTTCGTTACCTCCCCTGCTAGCTGCTGCT GCCATTGAGGCCCTCAACATCATGGAAGAGAATCCAG
	INTRON 11 - 12	53,342,227	53,343,127			901	GTAACAGTGCTAGGAAAGGTGGGGA..........CATCAAACTTTTCTTTTCAACGCAG
12	EXON 12	53,342,172	53,342,226	1	2	55	ATATTTTTGCAGTTTTAAAGAAAAAATGCCAGAACATCCATAAGTCTCTACAAGG
	INTRON 12 - 13	53,337,726	53,342,171			4,446	GTAAGTGTATGGCTTCCAGCCAGCA..........ATGTCACGTGTGTTTGTTTCTCTAG
13	EXON 13	53,337,608	53,337,725	2	0	118	TGTTTCGGGTTTAAAAGTGGTGGGAGAGTCCCTTTCTCCGGCGCTTCATCTCCAGCTGGA AGAGAGCACGGGCTCTCGGGAGAAAGATGTGAAGCTGCTTCAAGCAATCGTAGATCAG
	INTRON 13 - 14	53,335,415	53,337,607			2,193	GTAAGTATACAGTTATACAGTCGGC..........TGTTCTGTCCCCTTTCTCCCTGCAG
14	EXON 14	53,335,341	53,335,414	0	2	74	TGCATGGATAAGGGCATCGCATTGACTCAGGCACGGTACTTGGACAAGGAAGAGAAGTGC CTTCCTCCTCCAAG
	INTRON 14 - 15	53,333,978	53,335,340			1,363	GTTGGTGAATATTAAAAGGGCAGTG..........TGTTCCTGTGCTTTGTCTTTCTCAG
15	EXON 15	53,332,716	53,333,977	2	-	1,262	CATCAGGGTTGTGGTCACTGTGGAGCAGACGGAGGAAGAGCTACAGAGGGCTGCATCCAC CATCAGGGAGGCGGCCCAGGCTGTGCTGTTGTAGGCTCCTGCCCAGTGCTTCAGCCATGT CACCTGCGGACGGAACTACTCAGAGACCTCCAGCTGCCCAGGGTGTGGCTGTGCTTGAAT ACACAGCCAGAGTGGATGGTTGTATCCAGCAGGAGCTGACTTGTAGAGGATGACAGATGA CAGCATATCCCTGGTGTTTCTGCAGTGCCGTGTGCTCTGTCAGGATGCTTCACTGTCATT TGTATTCGCTTTTGTTTAAAACTGGAGCTTCCATTTTCCCTCTGTCGTCTGTGGGAATGA TTCAATAAGCACTTCTCCGTATCCATAGAAAAGGACTTTGCAGCTAAGAGGGACTCTCCA TGTATCCAGTTACTGTGGGAGACTGAGAGACTGTGTCCTCCCCTGTCCTCAGGCAGAGCT CAGTGGTGGCTGCTATGCAGATACTCTGTGTGTGTTATAAACGTCATACAACATGGTGAT CCTAGGACTCTATGTGCTCCAGTTACTGATACTGTCCTGTCTAATCTGAGCTTCACTAAC AGATCTTCATACCGCTTCCTAAGCAATAATCTGAATCAAACGTTATTTTATTTTTGTGTA ATTGACTTTATATTTTTTATATATTCTCTAGTCAGTTTTGGGAAGAGGGTTATTATTCTG ATCCCCAAATACAAATCATGCCCTTGGTATTTTCTAATATGTCCAATGTCCTTTTTCATG GTGGTTTTGTCCAGGAGCATAGACCTGTGGGCTTTTTCTAAGCTGAGAAAAATGAGACCT TTCCTCTTTCACTCTATAAATTCCAGATGCCTCCGAAAAATAGGGATGCTCTAAACGTGA TTTCCGAGCTCTACACTGGCTGCCGTTGTCCTTAGCGAGCGTGTTGAGTGATATAAAGGC TTGTGACATGTGCCACGGATCGTGTGCATGGAAGGCCTTCTCTTGTTGCACGGGCAGAGG AGTCAGGTCATTTAAATGTCATTTTCTGATGTGCGTTCATGTGAACCATGGGTCGGCATC TTCTTAAGTGATCTGTGACATTTTTAATGTTTCTATTTCATACGTGCCTTGTGATTGCTG CTGCTGTGAGGGTACACTCCTGTCGGGGAAAAGTCTGTTTTGGTTTGGTTTTTAATGAAA TAAACCTCCAAGAGCTTACATTCCTGAAAAGGAGTCTGTTTGGATAGCAGCTTGCTCAGC TC
	3' upstream sequence						AGCAGTCTCTTGATTTTAACCTTCATTTTCCCCTGTGTGTTTTTCTTTTGTTTTAGAACA TAACTAAATTTCTTAGTCCCTTCTTCCAGCCCAACCAAAGACTATGTACTATCTCAAAAT TCGTAGGTTCCTTCTGATTGAACACTGTCTACTTCGGACTATAAGAAGGCTGGAGTGGGG CCAGAAGACTTAGCTCCATGGGAGAGTTCTTGCCTGCCAAACACAGGCCCTGGGTTTGAT CCTCAGCTGGGGAAGGAAGCTTGGCTAAGTGGCAGGGCAGTTGCCTCTAATCGCTGGGAA GAGGCGGCCCAGAGGCAGCACAGCGCCTTAGGTGCTGGCCACCATCTCTGTTGGTGTACT CCCCCAGCTTCCCATGAAACCATCCCATGTCCTTCACCATGGAGCCCACACAGAACCAAC ATGAAGTTCAAGCCTCAGGATCCCTGTGGCCCCTGGGTCAGACCCAGTTACCATGTCGTG GGGGTCGGCGGACTTCTGGGGAGACGTGAACAGACATCTATTCACCTCAGACAAGACACC AACAAAAGACCAAGGGAACAGCTCACTCTTATCTAGCTTAGTAGACAAGTGGCTGATTGC AGCTAACTGTAGGAACACAGCAAACTAGAAAAATGCTAGCTGCTTCTATATCCTTAGGGG GGACTGGGGCCTCATGAGCCCAGGCCCACCTCATGACAGACTGTTAAAGGCTCAAGTCTA TGTGGTCTCACGGTGGCATTCACAGCTTCAGGAGAACAATGAGCACATCATTTCTGGGGA CATCACATTAGCTAGCACACGTCAGTTCTCCACAAGGGAGGTGAGTTGACACTGAAAAGT TATCGGATCACCTCAAGGCTCAAGCTTAACAAACTCCAGGTTAGACAAGACAACGAAATA CTAGGTGCAGCTCGGTCAGCCCACTGTAAACACCAAAGCCACTGCATGCAAAAGATCAAA GTTCAAGTAGGGCCAAGTTCGCTGGGAAGTGGGCAACTAA..........

Sequence Detail Report

Gene Symbol (Gene ID)	Sptlc1 (ENSMUSG00000021468)
Transcript ID	ENSMUST00000021920

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 474 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information