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Target CDS Information

Gene Symbol (Gene ID) Lman2 (ENSMUSG00000021484)
Cross Reference
CCDS CCDS26544.1
EMBL AK004952, AK014384, AK083442, ...show all
Fantom 1300009F09, 3322402M22, D030015M14, ...show all
GO GO:0000139, GO:0001948, GO:0001948, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005576, ...show all
MGI_trans_name Lman2-201
protein_id AAH49221.1, AAH55327.1, BAB23695.1, ...show all
RefSeq_mRNA NM_025828.3
RefSeq_peptide NP_080104
UCSC uc007qqo.1
UniParc UPI000005FC49
Uniprot/SWISSPROT Q9DBH5
Definition protein_id:ENSMUSP00000021940
translation:
MAAEAWLWRWGWGWGQRCPGRPGLPGPGPSPTTFLHLLLLLGPVAADITDGNSEHLKREH
SLIKPYQGVGSSSMPLWDFQGSTMLTSQYVRLTPDERSKEGSIWNHQPCFLKDWEMHVHF
KVHGTGKKNLHGDGIALWYTRDRLVPGPVFGSKDNFHGLAIFLDTYPNDETTERVFPYIS
VMVNNGSLSYDHSKDGRWSELAGCTADFRNRDHDTFLAVRYSRGRLTVMTDLEDKNEWKN
CIDITGVRLPTGYYFGASAGTGDLSDNHDIISIKLFQLTVERTPEEESIDWTKIEPGVNF
LKSPKDNVDDPTGNFRNGPLTGWRVFLLLLCALLGVVVCAVVGAVVFQKRQERNKRFY

Chromosome 13
Length
Position(start - end)
15,711
55,346,877 - 55,362,589
Orient to Chromosome minus
Link Location : (13:55346877-55362589)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Lman2 (ENSMUSG00000021484)
Transcript ID ENSMUST00000021940
Reports
substitution
cSNPs0
Insertion16
Deletion32
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num0
synonymous substitutions
non-synonymous substitutions
B6 transcript
(ENSMUST00000021940)
MAAEAWLWRWGWGWGQRCPGRPGLPGPGPSPTTFLHLLLLLGPVAADITDGNSEHLKREH
SLIKPYQGVGSSSMPLWDFQGSTMLTSQYVRLTPDERSKEGSIWNHQPCFLKDWEMHVHF
KVHGTGKKNLHGDGIALWYTRDRLVPGPVFGSKDNFHGLAIFLDTYPNDETTERVFPYIS
VMVNNGSLSYDHSKDGRWSELAGCTADFRNRDHDTFLAVRYSRGRLTVMTDLEDKNEWKN
CIDITGVRLPTGYYFGASAGTGDLSDNHDIISIKLFQLTVERTPEEESIDWTKIEPGVNF
LKSPKDNVDDPTGNFRNGPLTGWRVFLLLLCALLGVVVCAVVGAVVFQKRQERNKRFY*
MSMv4 transcript
MAAEAWLWRWGWGWGQRCPGRPGLPGPGPSPTTFLHLLLLLGPVAADITDGNSEHLKREH
SLIKPYQGVGSSSMPLWDFQGSTMLTSQYVRLTPDERSKEGSIWNHQPCFLKDWEMHVHF
KVHGTGKKNLHGDGIALWYTRDRLVPGPVFGSKDNFHGLAIFLDTYPNDETTERVFPYIS
VMVNNGSLSYDHSKDGRWSELAGCTADFRNRDHDTFLAVRYSRGRLTVMTDLEDKNEWKN
CIDITGVRLPTGYYFGASAGTGDLSDNHDIISIKLFQLTVERTPEEESIDWTKIEPGVNF
LKSPKDNVDDPTGNFRNGPLTGWRVFLLLLCALLGVVVCAVVGAVVFQKRQERNKRFY*
homology100.00 (359 / 359)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Lman2 (ENSMUSG00000021484)
Transcript ID ENSMUST00000021940
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........AGTTCCAGGATAGACAGGGCTATACAGAGAAACCCTGTCTCAAAAAACCA
AAATCAAAACCAAAACAAAACTAGCCAGCACACTTTTTACTGAACACAAACTTTTTTGGG
GTTTCCTATCAACATCACTATTACATACAATTTGTTAAGTGTTACATGTAATCTAGAGAT
GATTTAAAGTATATTGGAAGGCATGCATAAATAGCACATGTCTTTAATTCCAGTGCTTAG
AAAGGAGAGGCGAGTAGATCTTTGTGAGTTCAAGGCCAGCCTGGTGCAGTAAGTACGCCT
AATCCTTGGGCCATCTCTGCAGCCCCTGAAATCAGGATTTCTAAGGTAAATTTAAGCTCC
TTTTTTTTTTTTAAAAAAAAATAAAAATAGTACTGGCAACTAAACTTTTTCCTAAGTAGA
TTAATAGGTACAATAGAATGGTATCTGGGCTAGAGACCACAGTGTTCAACTATCCGGAGC
CAGTTGTCCTGGGTCCTTCCACAGACACTTGGTGTGTCAACAAGAACTGATACTTTTTGG
AGTCAGATGTCTTCCGGCGTTCCCAGAGGTTCCAGGTCAGAATCTGATCTGCTCCTCCTG
CTTCTATCTGACTGCTGGAGTCATTGCGGGGTAGAGGAGGTCCTCAAATAACTGGCCTCT
TTTAAGTCTCCAGAGGCGTGGTACTAGCTTGAGGTGGCCTAAAGGATTTGCCCCACCCAC
CGAGTCACTCCAGTGAGGCTTTCCCACTGTACTGGAAAGGTCACTTCAAAGTCACCATCT
TTTCAGAAGCTTAGGACTGAGCAGGGTGCTCGGCTTGCACAAGCAGACCGCGAAACTACA
AGTTCCAGCATGCTCCGCTTCGACGACGCTGCTCGCTTTCCCCCGTCCCAGGAGAGACCT
TTGCATTTCGTTGGCCTGCAAGCCTAACGTGCTGCTCCATGATTGGTTGGATCCCCTTGT
CGCTCATGAGAACCCTCGGCCGTGGCCGGCTGTCAGGCGACCAGGAACCT
1 EXON 1 55,362,388 55,362,783 - 1 396
CCAAAGTTATGGAGCCGCGCTCTACTGGGATAGGAGGCTGGCCAGCCAATAAGGCTGCCA
TCCCGCTGGCGGCGAGGCTTTCCTTCTTAACTCTCCGGTGATCCTAGTTTGGAGGGCTTC
CGGCCGGAGACCATTAGAAAAGACACCCGGAAGGCGGAAGTCTTAGGGCGGAAGTGGCCG
AGAGAACAAGGAGAATGGCGGCCGAGGCCTGGCTTTGGCGCTGGGGCTGGGGCTGGGGTC
AGCGGTGCCCAGGGAGGCCTGGGCTTCCTGGCCCCGGCCCGAGCCCCACGACATTTCTAC
ATTTGCTTCTGTTGCTGGGGCCGGTGGCTGCGGATATCACCGACGGCAACAGCGAACACC
TCAAGCGGGAGCACTCGCTCATCAAGCCCTACCAAG
INTRON 1 - 2 55,362,240 55,362,387 148
GTGAGGGAGGCCTGTAGCTGAGGGT..........TGTCCACGTCCGTCTCTGCCCACAG
2 EXON 2 55,362,121 55,362,239 1 0 119
GGGTCGGTTCCAGTTCCATGCCGCTCTGGGACTTCCAAGGCAGCACGATGCTGACGAGCC
AGTACGTGCGCCTGACCCCGGACGAGCGCAGCAAAGAGGGCTCGATCTGGAACCACCAG
INTRON 2 - 3 55,353,064 55,362,120 9,057
GTGAGGCTCTCCCAAGAGGCTGAAC..........GAGGGCCTCTCTGCTCCCTTTTCAG
3 EXON 3 55,352,946 55,353,063 0 1 118
CCATGCTTCCTTAAGGACTGGGAAATGCACGTCCACTTCAAAGTCCATGGCACAGGGAAG
AAGAACCTCCACGGAGATGGCATTGCCTTGTGGTACACCCGAGACCGCCTCGTACCAG
INTRON 3 - 4 55,351,791 55,352,945 1,155
GTGAGGAGGGGCACGGGTGTGGCTG..........ATTCTGAAATATCTCCTAATTCCAG
4 EXON 4 55,351,711 55,351,790 1 0 80
GGCCTGTGTTTGGAAGCAAAGACAACTTCCATGGTTTGGCCATCTTCCTGGACACGTATC
CCAATGATGAAACCACTGAG
INTRON 4 - 5 55,351,542 55,351,710 169
GTAGGACCCCACTCTTCCTCTGCAG..........GAAGTAACCGGTGTGTCGGTTCCAG
5 EXON 5 55,351,380 55,351,541 0 0 162
CGTGTGTTCCCGTACATCTCGGTGATGGTGAACAATGGCTCTCTGTCGTACGATCATAGC
AAAGATGGACGATGGAGTGAGTTGGCAGGCTGCACGGCTGACTTCCGCAACCGGGACCAT
GACACCTTCCTAGCTGTACGCTATTCCCGGGGCCGCCTCACG
INTRON 5 - 6 55,351,271 55,351,379 109
GTGAGCAGGCATAAGGGGGAGGCCA..........AGCTTGACCTGCCCGCTGACTGCAG
6 EXON 6 55,351,156 55,351,270 0 1 115
GTGATGACTGACCTGGAAGACAAGAACGAGTGGAAGAACTGCATTGACATCACAGGGGTG
CGCCTGCCCACTGGCTACTACTTTGGAGCCTCTGCTGGCACCGGCGACCTGTCTG
INTRON 6 - 7 55,348,435 55,351,155 2,721
GTGAGTGTGTGAAAGGATGCTCTCA..........GAGGTGGGACCCTCTCTGCCTCTAG
7 EXON 7 55,348,315 55,348,434 1 1 120
ACAACCACGACATCATCTCCATCAAGCTGTTCCAGCTCACGGTGGAGCGGACGCCTGAGG
AGGAGAGCATCGACTGGACCAAGATTGAGCCTGGCGTCAATTTCCTCAAGTCCCCCAAAG
INTRON 7 - 8 55,347,038 55,348,314 1,277
GTGGGTGGGTGTGTGTGTGTGTGTG..........TGGTAATCTTTGTCTTTTTCCATAG
8 EXON 8 55,343,833 55,347,037 1 - 3,205
ACAATGTGGACGACCCCACTGGAAACTTCCGCAATGGGCCCCTGACAGGATGGAGGGTGT
TCCTGCTGCTGCTGTGCGCACTCCTGGGCGTTGTCGTCTGTGCTGTGGTGGGCGCTGTGG
TGTTTCAGAAGCGCCAGGAACGGAACAAACGTTTCTACTGAGGCCGGTCTGGCTGGGAAG
GGCCTGACCTTGGGCCAGGGCTCTTATGTGAACTTTTTTCTACTGGGATTGTAAAAACCA
ACGAACCTTATTTCTTAACTGTTTCAAAGAAATAATTAAAGTATTTTCATACATTTTGCT
TCTTGCCCAGCTGAGACAGCGGGCAGGGCTGGGGTCAGGGTTTAGCATCCCCACAGCTGG
AGGTTTTTGCTCCATCCCAAGGCTAGCTCTCAGGAGCAAGCAAGTCTGTATTTGGGGCCC
AGGTGAGGCCCTGTGTATGGGATTGCTACTTAGGGTTCCAGGCAGTGGTTTTGTTCTGAG
GCCTGCGGCAGCAAATGGAGTTTGGGGTTCTGGACCTCCCAGTAGCTTTTTACAAAGGCA
GACCTCAGCCAAGGCTGGAGGACCGTTCAGTAGGGCCAAGGTGTGACAGTTTACTAAAAG
TAGCCCGTCTCAGCCTCATGCCTGTCCTAAGGGCTTTTTTCCACATCTGGTGATTCCCGG
TCCCTTCTCTGACCTAGAGCAGAGAGATGGTGGCTGTCACATTGCCATTTGGGGAAGCAT
GACTCTCAGGTCAAGCAGGACTCACCCCATTCTGCCTGGTATGCAGTGTTTTGGGAATAG
GGTATTGTACACAGGATGTGACCTCAGCCCAGGGCACAGGCACTGGGGACAGAGGGGCAA
TGACAGAAATCTTGAGATTGAGGTGATCCGGAAGGAGCTGCTGAGCCAGGAATGGAAGAC
AGCTGGATGGCAGTGCTGCTCCCTTTGGGCGGCTTGAGGGGACAAGGCTGGGGGGCCGAG
TGGAAAGCAGGCAATACCACAGCCAGCTTCCGGTCTCTGGCACCCTCCGCAGTCCAGCTC
TAGGGACTCACCAAGTCTGCCTCCTTCCTCGCCATCCCCTCCCCACAGTCAATGCTTGGT
CTCTTACCTCACAAGCAAAGGCTGCCATCCATGCAGTGCGGCGTCCTCAGTTCGCTTTGT
TGCTGCAGGAAAGGAGTGGTGGAAGCCCATGGAGTGAACACGGCTGTTTTGTTAGTACCA
CCGTCTTTACCTTCTCTCAGCAGAGCTGTTCACTGAGCTGCTAGGAGCTATCTGTCCTTG
TCGGAAACTGTTCATGGTCATGTGTCCAGAGGTAGTCACAGCAGCTGCCAGCTGCAGCTT
GCTCCCAGGCTTATGAGCCTGTCATGGAGCCTCAGGAACCCCGTCTTTTTGACACATTGC
TCTCTAAGCATGCATTGCCTATTTGCTGTGACACCATGTGGGCCGTGTCCAAGCAGTTAC
GTTCTGCGTGACAGCAGGCCTGGGACCTGAAGCATCAGGCTTCTGCCGTCGGGAAGGACC
TCAGTTCCTGTTCTAACTTGGCCTTCCTGATGTCCCGAGTTATTAGCTACATTATAATCA
AGATTTACCTTTGTGTATTAGAGCCACCTTAGCAGCTGCTGTAGCATTGGGAGATAACTC
AATAAAACACTTGTCTGACAGTACTGGCGGCTGATGGTCTCTGGGGCTCACTAGTCTAGT
TGGGGACTTCCATGCCAAAGGAGGCACATGGCATTCCCAAAGATCACACCCAAAGCTGTC
CTCTGGTCTCCACACACATGGCATAAAACAAAACAAAACAAACCCCTGCTTTCTCCATAT
TTGGCCTAGTAAATCTTGTGGTGTAGGACCAGGCAGGGTCTGCAATGAACCTTAGATGCC
AGCACTTAGTGAGTTTGTTTAACCTTCCAGGTGGGCTCTCCATCCGTCATCACATAGCCT
CACTGTACTTGTGAAGAACTGTTTCTAAGTTCACCCCAGAGTTGTCTGTCTGCACACAGG
AATGATTCCACAATTAGTTTTTTTGTCATATGTTCCTAAAAATGGCCTTCCTAATCAACA
CTGAAGCACAAATGTGTACCCCTCCTTGTATCTTCTCTGCAGTGTTGGAGATGCAAACCT
GCCGACTCACGTGGCCTCCTTTGTCCCCTCCCCACAGAGATGATGGTTGTTAAAGTGTTC
CTTAAATTGTATATTTTAAAACTTTGTTTTGCTTTAAAAAGCTTTTAAATGGTGTTTGGA
TGTATTCCTCAGCTCTTCGAGCAGCATGGCCGTGTCCTGGACATGTAACCCAAGATGTCG
CTCAAGATGTCTTCTGTGCACACTGGTGACCACTCTTGGCACCGTACCAGACTGTCAGAT
GGCCTCTGGCAGTGCTTATACCTGGTGCAGCCTCCAATGTTCTTGAATTGTGTTCTCATA
CGTCATGAGAAGTTTGGGTCTGCAGCTTGTATCCAGTTCCAGTTTTGCTAGCCAGAGCTA
CGATGCATTCTGAAGAGAATTTTTCTCCCCTTCCCACCCCCACTCCCTCAGCAGCTCTGC
TGTGTGCTTTTCTGCACCAGGCTGGCAGTCTCTGCTCACCGGTCACGTGCGTCCTCTGAC
GCTTTAGTTCCAACTCCTGTTACTGATGTTGTGGAATTGTTATTTTCAGCCTCCTGGTTA
TAAGCTTTGCAGAGGTTCCTTCCCACATGCTTAGCTTCCTGATTTGCTAATGACGTCATT
TGATGTGCCATCTGCATTTAAATGGCACTTATTAATCTTTTCCAAAGATGATTTTCCTGA
AGGTTTCTAACTTTGGCCTTTAAAAATTTGCACTTTGTTGAGGTGGGTCTTATGGAGTGC
TGATGTCATCGCCCCTGCTGTCTCCACCCAGTTGTGGCCAAGTTTTCCTGACTCTGTCAT
CTTCCAGCACCCACTCCTGACCTTGTCCCTTTCTCTTCTCATCAGCTGGGATGCTTCTCC
TCCCAGCTGCTTCCATGTGGACCTGTGGCTCAGGAGACCCAGAGGACACGAGGTGCGGAA
GGTCTTCCCTTCCTGCCTGGAATATGGTAGGACCCTGGGGGTACAGAAGCAAGCGCCTGT
GACAGGGCTGGAGAGAGCACATACCTGTTAGATAGGGGGCCTCCAGGTCAGCACTGAAGC
CCTGCCTCAAGCCTTAGATTGTCAACTGCTGGGGTTTTGTGTGTGTGAGTGTGTGAAAGA
AATAAATCCCTATTTGTTCAGACTA
3' upstream sequence
GTGTGAGTTGTGTGCTCTGTTACTTAATCTGAAAACAGCCTAACCTCTCCCCCGTCCACC
CTGGCCTCTAGCTGATATGTGCACACAAGCAGCTCTTTTAAAGTCACTTCCTAAGCAAGC
CTCATGACTCAAGTTGAATCCATTTGTAATGAGTGTCATCTAGTCTGGGACACACAAACC
CGAAAGATGAAGGGAATCAGAAGATGAGGCTGTGGAGGAAGCGCAGACAGCTTTATTCCT
TTAGGATGGATGGCTCTGGCTTTGGTATTGCATAGGGCTCCTGGCTCTTCCCTTCCCCCA
GTGGTCCAGTTTAGATACCTATCCCAGTGTCTCCCTGGCCATTTCTCCTCACAGGCTTAC
CGTGAGGTCTTTCTGGGTGGCTTGCAGTGGGCCTGTCTCTCGGGGCAATGGCCACTCTAG
CTAATTGCTGCTGAGAAGGGGTGGAGTCTGGGGTGATGACTCCTGCGGTTGGTGCATGCT
ACTGTGGTCAAGTTGTGACAGGCATCAAGCTTCCAGGTAAAAACCCACTGTAATTTTATG
GTTAACTGTCTTTTCTCCTTCTCTAGAAGCCACCCAGAAAGACCTCACGGTAAGCCTGTG
AGGAGAAATGGCCAGGGAGACACTGGGATAGGTATCTAAACTGGACCACTGGGGGAAGGG
AAGACCCATGCAATACCAAAGCCAATACCATGCAGCACATAGAGAACGCCACACTGTGAA
ATAAATATTTTCCTTTACTCCTTGGCTGCTTGGTTTTCTGTTCTGTCAAGAGTCGGGGAC
CAGGCTGGATCGGGGAAGGGGCTTTGGAAGGCATTTTGGGACCAACATGCTTAGATCTGA
AGCAGGAGAGCCAAACCCCATCGTCAAAGCCAGCTGCTCTGTGACTCAAACAGCACAAAA
CAATTTAGTGTCTACACAGCAGGTATTTGTTCCTCTGCAGAACTGACCCTGGTGGTTTAC
CCTGGGCGGGAGACTGACTGTGTCAGTGGCTGGGCCAGAG..........

Sequence Detail Report

Gene Symbol (Gene ID) Lman2 (ENSMUSG00000021484)
Transcript ID ENSMUST00000021940
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 359 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information