MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Mxd3 (ENSMUSG00000021485)

Cross Reference

CCDS	CCDS26543.1
EMBL	AK138742, BC051970, U32394
Fantom	A430041D12
GO	GO:0003677, GO:0005515, GO:0005515, ...show all
goslim_goa	GO:0003674, GO:0003677, GO:0005575, ...show all
MGI_trans_name	Mxd3-001
OTTP	OTTMUSP00000022968
OTTT	OTTMUST00000049536
protein_id	AAB02794.1, AAH51970.1, BAE23764.1
RefSeq_mRNA	NM_016662.4

RefSeq_peptide	NP_057871
UCSC	uc007qqn.1
UniParc	UPI0000192676
Uniprot/SWISSPROT	Q80US8
Vega_transcript	Mxd3-001, OTTMUST00000049536
Vega_translation	214568, OTTMUSP00000022968

Definition

protein_id:ENSMUSP00000021941
translation:

MEPVASNIQVLLQAAEFLERREREAEHGYASLCPHHSPGTVCRRRKPPLQAPGALNSGRS
VHNELEKRRRAQLKRCLEQLRQQMPLGVDCTRYTTLSLLRRARVHIQKLEEQEQQARRLK
EKLRSKQQSLQQQLEQLQGLPGARERERLRADSLDSSGLSSERSDSDQEDLEVDVESLVF
GTETELLQSFSAGREHSYSHSTCAWL

Chromosome

Length
Position(start - end)

3,883
55,325,783 - 55,329,667

Orient to Chromosome

minus

Link

Location : (13:55325783-55329667)
/

Detail Map

name	Prelid1 (ENSMUSG00000021486)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Prelid1 note : PRELI domain containing 1 [Source:MGI Symbol;Acc:MGI:1913744]

name	Mxd3 (ENSMUSG00000021485)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Mxd3 note : Max dimerization protein 3 [Source:MGI Symbol;Acc:MGI:104987]

name	Prelid1 (ENSMUSG00000021486)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000021942

name	Mxd3 (ENSMUSG00000021485)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000021941

name	Prelid1 (ENSMUSG00000021486) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS26542.1 Uniprot/SWISSPROT:Q8R107 RefSeq_peptide:NP_079872 RefSeq_mRNA:NM_025596.5 RefSeq_peptide_predicted:XP_006544050.1 UCSC:uc007qql.1 Fantom:1110012F09 Fantom:F630118G24 Fantom:I830008B10 Fantom:I830028A16 Fantom:I920066F12 EMBL:AK003629 EMBL:AK146857 EMBL:AK150465 EMBL:AK151321 EMBL:AK155042 EMBL:BC024813 EMBL:BC025859 EMBL:BC098241 GO:GO:0005515 GO:GO:0005654 GO:GO:0005654 GO:GO:0005739 GO:GO:0005758 GO:GO:0005758 GO:GO:0006915 GO:GO:0010917 GO:GO:0010917 GO:GO:0010950 GO:GO:0010950 GO:GO:0015914 GO:GO:0015914 GO:GO:0043066 GO:GO:0043066 GO:GO:0043234 GO:GO:0043234 GO:GO:0045580 GO:GO:0045580 GO:GO:0051881 GO:GO:0051881 GO:GO:0070234 GO:GO:0070234 GO:GO:0090201 GO:GO:0090201 GO:GO:0097035 GO:GO:0097035 GO:GO:1901857 GO:GO:1901857 GO:GO:1990050 GO:GO:1990050 GO:GO:2001140 GO:GO:2001140 MGI_trans_name:Prelid1-201 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005737 goslim_goa:GO:0005739 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0008219 goslim_goa:GO:0043226 goslim_goa:GO:0043234 goslim_goa:GO:0061024 protein_id:AAH24813.2 protein_id:AAH25859.1 protein_id:AAH98241.1 protein_id:BAB22898.2 protein_id:BAE27486.1 protein_id:BAE29582.1 protein_id:BAE30302.1 protein_id:BAE33009.1 UniParc:UPI0000027C9E
definition	note : transcript_id=ENSMUST00000021942 protein_id : ENSMUSP00000021942 translation : MVKYFLGQSVLRSSWDQVFAAFWQRYPNPYSKHVLTEDIVHREVTPDQKLLSRRLLTKTNRMPRWAERLFPANVAHSVYILEDSIVDPQNQTMTTFTWNINHARLMVVEERCVYCVNSDNSGWTEIRREAWVSSSLFGVSRAVQEFGLARFKSNVTKTMKGFEYILAKLQGEAPSKTLVETAKEAKEKAKETALAATEKAKDLANKAATKQQQRQLV

name	Mxd3 (ENSMUSG00000021485) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS26543.1 Uniprot/SWISSPROT:Q80US8 RefSeq_peptide:NP_057871 RefSeq_mRNA:NM_016662.4 Vega_transcript:Mxd3-001 Vega_transcript:OTTMUST00000049536 UCSC:uc007qqn.1 Fantom:A430041D12 EMBL:AK138742 EMBL:BC051970 EMBL:U32394 GO:GO:0003677 GO:GO:0005515 GO:GO:0005515 GO:GO:0005634 GO:GO:0006351 GO:GO:0045892 GO:GO:0046983 MGI_trans_name:Mxd3-001 Vega_translation:214568 Vega_translation:OTTMUSP00000022968 goslim_goa:GO:0003674 goslim_goa:GO:0003677 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0008150 goslim_goa:GO:0009058 goslim_goa:GO:0034641 goslim_goa:GO:0043226 protein_id:AAB02794.1 protein_id:AAH51970.1 protein_id:BAE23764.1 OTTP:OTTMUSP00000022968 OTTT:OTTMUST00000049536 UniParc:UPI0000192676
definition	note : transcript_id=ENSMUST00000021941 protein_id : ENSMUSP00000021941 translation : MEPVASNIQVLLQAAEFLERREREAEHGYASLCPHHSPGTVCRRRKPPLQAPGALNSGRSVHNELEKRRRAQLKRCLEQLRQQMPLGVDCTRYTTLSLLRRARVHIQKLEEQEQQARRLKEKLRSKQQSLQQQLEQLQGLPGARERERLRADSLDSSGLSSERSDSDQEDLEVDVESLVFGTETELLQSFSAGREHSYSHSTCAWL

name
type	STS
link
xref	UniSTS_NUM:273540 UniSTS:PMC86662P1
definition	note : map_weight=1 standard_name : PMC86662P1

name
type	misc_feature
link
xref
definition	note : contig AC160958.2 1..172899(-1)

name	Mxd3 (ENSMUSG00000021485)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000049537 Vega_transcript:OTTMUST00000049537 MGI_trans_name:Mxd3-002 OTTT:OTTMUST00000049537
definition	note : retained_intron note : transcript_id=ENSMUST00000146181

name	Mxd3 (ENSMUSG00000021485)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000049538 Vega_transcript:OTTMUST00000049538 MGI_trans_name:Mxd3-003 OTTT:OTTMUST00000049538
definition	note : processed_transcript note : transcript_id=ENSMUST00000141644

Polymorphisms
Exon
Sequence

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Mxd3 (ENSMUSG00000021485)
Transcript ID	ENSMUST00000021941

Reports
substitution
cSNPs	2
Insertion	12
Deletion	8
SNPs	+1kb 55329828(c.-161C>T), 55329938(c.-271G>A), 55329998(c.-331C>A), 55330177(c.-510T>C), 55330316(c.-649C>A), 55330371(c.-704A>G), 55330435(c.-768A>G), 55330449(c.-782C>T), 55330837(c.-1170C>T), 55331151(c.-1484C>G), 55331192(c.-1525T>C), 55331566(c.-1899C>T), 55331589(c.-1922G>A), 55331606(c.-1939T>A), 55331611(c.-1944A>T), 55331663(c.-1996A>T), 55331667(c.-2000G>A), 55331671(c.-2004C>T), 55331715(c.-2048T>G), 55331751(c.-2084C>A), 55331767(c.-2100G>A), 55332400(c.-2733G>C), 55332529(c.-2862A>G), 55332530(c.-2863A>G), 55332549(c.-2882A>C), 55332614(c.-2947G>T), 55332838(c.-3171G>A), 55333085(c.-3418C>T), 55333134(c.-3467A>G), 55333217(c.-3550A>G), 55333353(c.-3686T>A), 55333355(c.-3688T>A), 55333391(c.-3724G>A), 55333531(c.-3864A>C), 55333611(c.-3944C>A), 55333634(c.-3967G>A), 55333678(c.-4011A>G), 55333721(c.-4054T>C), 55333849(c.-4182C>T), 55333883(c.-4216G>A), 55333949(c.-4282T>C), 55333973(c.-4306A>C), 55333974(c.-4307C>T), 55334125(c.-4458T>C), 55334153(c.-4486C>A), 55334155(c.-4488T>C), 55334243(c.-4576A>C), 5'UTR 55329676(c.-9G>A), CDS 55325882(c.522T>C), 55329327(c.118A>G), 3'UTR 55325336(c.447C>A), 55325455(c.328G>A), INTRON 55325923(c.506-25C>T), 55325970(c.505+43G>A), 55325989(c.505+24C>T), 55326273(c.322-77A>G), 55326847(c.322-651T>C), 55327013(c.322-817A>G), 55327289(c.321+1081A>C), 55327496(c.321+874C>T), 55327542(c.321+828A>G), 55327585(c.321+785C>G), 55327630(c.321+740C>T), 55327756(c.321+614C>G), 55327870(c.321+500A>C), 55327975(c.321+395T>C), 55327978(c.321+392A>T), 55328285(c.321+85C>A), 55328293(c.321+77C>T), 55328548(c.207-64C>T), 55328736(c.177-93G>A), 55328858(c.177-215C>A), -1kb 55320912(c.4871A>C), 55321352(c.4431C>T), 55321767(c.4016C>G), 55321854(c.3929C>T), 55321871(c.3912G>C), 55321891(c.3892C>A), 55322176(c.3607A>G), 55322538(c.3245C>T), 55323283(c.2500C>A), 55323515(c.2268T>C), 55323997(c.1786A>G), 55324109(c.1674T>C), 55324120(c.1663C>T), 55324155(c.1628T>C), 55324471(c.1312C>T), 55324765(c.1018T>C), 55325075(c.*708T>A),
Insertions	+1kb 55330806 (c.-1140_-1139insGTTT), 55331138 (c.-1472_-1471insCGT), 55332804 (c.-3138_-3137insG), 55333807 (c.-4141_-4140insT), 55333813 (c.-4147_-4146insT), 55334500 (c.-4834_-4833insGG), 5'UTR CDS 3'UTR INTRON 55326229 (c.322-34dupC), 55326780 (c.322-586_322-585dupCT), 55326943 (c.322-748_322-747insCC), 55328817 (c.177-175dupT), 55329171 (c.176+97dupA), -1kb 55323294 (c.2487_2488dupAA),
Deletions	+1kb 55331219 (c.-1554_-1553delTA), 55332491 (c.-2826_-2825delTA), 55333055 (c.-3389delA), 55333919 (c.-4255_-4253delTTG), 5'UTR CDS 3'UTR INTRON 55326515 (c.322-321_322-320delTG), 55329029 (c.176+235_176+239delTCACA), -1kb 55321247 (c.4535delG), 55323533 (c.2245_*2249delACCCC),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	1
non-synonymous num	1
synonymous substitutions	55325882 (p.Asp174Asp),
non-synonymous substitutions	55329327 (p.Thr40Ala),
B6 transcript (ENSMUST00000021941)	MEPVASNIQVLLQAAEFLERREREAEHGYASLCPHHSPGTVCRRRKPPLQAPGALNSGRS VHNELEKRRRAQLKRCLEQLRQQMPLGVDCTRYTTLSLLRRARVHIQKLEEQEQQARRLK EKLRSKQQSLQQQLEQLQGLPGARERERLRADSLDSSGLSSERSDSDQEDLEVDVESLVF GTETELLQSFSAGREHSYSHSTCAWL*
MSMv4 transcript	MEPVASNIQVLLQAAEFLERREREAEHGYASLCPHHSPGAVCRRRKPPLQAPGALNSGRS VHNELEKRRRAQLKRCLEQLRQQMPLGVDCTRYTTLSLLRRARVHIQKLEEQEQQARRLK EKLRSKQQSLQQQLEQLQGLPGARERERLRADSLDSSGLSSERSDSDQEDLEVDVESLVF GTETELLQSFSAGREHSYSHSTCAWL*
homology	99.52 (207 / 207)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Mxd3 (ENSMUSG00000021485)
Transcript ID	ENSMUST00000021941


..........AAAAAAAAAAAAAAAAAGGCGATTTCCCTTGGGAAGACAGCCTCTTCCGA
AGGGGCCTGATTGGCACGTGACTGTGTTTTCCTAAGGCCATCTGTTCATAGTGCCCCCTC
TCTGGTCCACTTGACTCTCAGAATGCCCCATCATTCCTGACTCATAGGTATGGCTACCCC
TAGTGGCTATCCAGGAGCCTCCACCGGATGGCTAGCAGAGCCTTGTTCTAGATGCCACCC
CGCCCCCCAGGGGCTGTCTGGTTGCAATGGCCCTAATGAGAGACGTATGTTTGCTTGCTG
GCATTAGTTGTAACCACCGTAACGCTGTCTCACGGTACGCGAGTTGTCGTCACACCTAGC
AGTGGCCGCTGAGGAGCTCCAGAACTCAGGGTGAGACGGTGTGTTTCATGCCCTGGCTTG
GGAAGCTATCAACAGCCGACGTTTTCACGACGACATTAACCTCCCTGCGAAGGACGGGAG
AGCTAGGAGGGATTCCCATTCGAAGACCAATGAAGGGCAGATACGGGGCGGCCCGTACCG
TGTCCTGCGTCCGCGCCCCCAACACAGGCGCGTGCGCATCGCCGTCTCTCGCAGCTCGCC
CCCGCCCTCCTCGTCCGGGTTTTCAAATTTGAAACCGGCAGCTTTTCCCGCCCGAGTCGG
GGCCCCCGCGGCGGGAGAAGGCGGGGCCGCGCATCAACCAACCCAGTCTCCGAGGCTCGC
GGCCCGCCCGGAGGATGTGGCCGCGTCCCGCGCGCACGTGTAGCCCAGGCAGGCGCCTGC
TAGGACCGGCGCGATTGCCTGTCGCAGGAGTGGGGCAGCTTGCAGCGCCCAGTGTCCGGG
CTGCCTGACCCGGCGGAGGGTTCTTCCCTAAAGCGCAGAGCAGCAGCCCAGTTCAGCCTG
GGCGGGAAGAGGCGGGCTGGGCTGGGCAGGGCGGGGCGGATGGGGTTCCCATGGGCGGGG
CGGGGAGGGGCCAGGGCGGGGCGACCGGGGGCGGGGCGGGCCCTGTGCTT
GTGGCACCGTGTCAGTTACATTGAAACAAAAGTGGTAAGGCGGCTGACAGGGCTAGCATCCCTAGCCCGCTGGTCGTCGGCTATCGCCGACATGGAACCCGTGGCTAGCAACATCCAGGTCCTGCTGCAGGCAGCGGAGTTCCTGGAGAGGCGCGAGAGAG
GTGAGGACAGACCCCGCGCGCGGGC..........TGTTGCTGTGTTCTCTCTCTGGCAG
AGGCAGAGCACGGTTATGCGTCCCTGTGTCCACACCACAGCCCCGGGGCCGTCTGCAGGAGGAGGAAGCCACCCCTGCAAGCTCCTGGCGCGCTGAACAGTGGGCG
GTGAGCAGGGATGGGGCAGTGTAGG..........CACTTGATCCCCTTGGCATTCACAG
GTCTGTGCACAACGAGCTGGAGAAGCGCAG
GTGAGTCCCAACCTGGCTCTCAACA..........GCCCTCCAGACTCCTTCCCTTGCAG
GAGAGCCCAGCTGAAGCGGTGCTTAGAGCAACTGAGGCAGCAGATGCCCCTGGGAGTTGACTGTACCCGATACACTACACTAAGCCTCCTGCGCCGGGCCAGGGTGCATATCCAG
GTGAGGAGCTGTCTCTTGTCTCTCT..........TTCCCTGCCCCCGTGGGTTCTACAG
AAGCTGGAGGAGCAGGAGCAGCAAGCCCGGCGGCTCAAGGAAAAGCTTCGCAGCAAACAGCAGAGCCTGCAGCAGCAGCTGGAGCAGCTCCAGGGGCTGCCAGGAGCTAGGGAGCGAGAGCGGCTGAGGGCAGACAGCTTGGACTCTTCAGGCCTGTCCTCTGAGCGCTCAGACTCAGACCAAG
GTGGGTGCACACCCTGGGAGGGGTG..........TGAGCAGACTGGCTTCTCCTTGCAG
AGGATCTGGAGGTGGACGTGGAGAGCCTGGTGTTTGGGACTGAAACAGAGCTCCTACAGAGCTTCAGCGCTGGGCGGGAGCACAGCTACTCACACAGCACCTGCGCCTGGCTATGATGCCCACTGCGGCCTGTACTCTCCTTGGACTGAGCCTGCCAGTCAGTGGCCCCCACACAAGTTGGCTTAGAGCCACATGTTGAAGAGACTAAAGCCAAGGTGTGGGAGCAGACTCCAGACTCTGCTGCACAGCTTGAGCTTGGGCCACCCTCCCCATCCCCCAGGGAATTTCATGTAGCACTTGGCCCTGCTTTGCTGCTCCCCACAGGGACAGGAAGCCTCAAAACTTCTTGTTCCTGGGCAAAGCCCCAGGCCTCTGCCCGTATATACTGCACAGTATTTTCATTAAAATCCTCTTTTGTAAGTTCCTGTCCATGGTTTTGCCCCAATGAGATGAAGTCCCTGCCACAACTGGAAGAGAGGAAATAAGGTCAGTAGCTGGCAAAAAGGGTCTTGTGAAGGCAGTGCACATCTGACAGCGTGGAGGATGCTCTGTGGTCCTGATGATGAGGCAGAGTGTGTGACGTGCCTGAGCTCCTGATTCAAACCAAAGCTATCTGACTCCAGAACTGGGGCTAATCAAATCATGTGTTTATTGAGTGCCTGTTATGTGCTAAATATTGTTCAGGGTACTTGGGACACAGCAGAGAATAAAACAAGGAGCCCTGCCCTCTT
GGAGCGTACAGTCTATCACCTGCGCACTGCTGTGACCTTGGGCAAGTCACTGCACCCCTC
TGCCCGGCAGACAGAGCTGGGTGTGGTGCAGAAGCTGACCAGGACAGGGCCCTGACCCAC
CACCCCAGACAGCAGAGAGGGCTGCAGGTTGCTCTTTAATAATCACGTACACTGGGGAGA
GGGAGAGGAAGCGAGTTATACGAGCTGCCGCTGCTGCTGCTTGGTGGCGGCCTTGTTGGC
CAGGTCCTTGGCCTTCTCTGTAGCTGCCAGTGCGGTCTCCTTTGCTTTCTCTTTGGCCTC
TTTGGCTGTCTCAACAAGGGTTTTGGAAGGGGCCTCACCTGTGGCAAACGACAGGGTCTA
GCTTCAGACAATGCCTGGAAGACCCACCCAAGCCCTGGTCAACCACAGCAGCCATTGTTG
ATGGGTTCTTAGGAATGAAGTTGGTGTCCTGTTTCTTGACCCTCCCACCCATCCTTCATA
GGCACACTTAGGAGTCTCATTGGTCAAGGCTACTGGGAGTGAGGGTTTCTCCAACTCCTG
ACACAGTGTCCAGGGCCCTCACCTTGTAGCTTGGCCAGGATGTATTCAAAGCCCTTCATT
GTCTTGGTCACATTGCTTTTGAACCGGGCAAGACCAAATTCCTGGCAGGAGAGGGAGAAG
GATGGGAGAGTTACTCAATGACCCAGAGCCGAGCCCTGCCCTGCCCGCCCTGCAGCCTCT
TACCTGGACAGCTCTGGAGACGCCAAATAAGCTAGAGGAGACCCAGGCTTCCCGACGGAT
TTCGGTCCAGCCGCTATTGTCAGAGTTCACACAGTAAACACATCGTTCCTCCACCACCTT
CAAGGGAAGTTGGGCTGAGCACCTCAAAGAAGCACCCTATGCTCTGCTCACTTGCACGCT
CACACCCTGTCTCTACCATGCTACTGTCCCTGTCTCCTTCACAAGGGGAAGCAATGACAA
AGTTCTTCCCGTTATGTATCCTGGGCCCAGAGGGAGGCTG..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........AAAAAAAAAAAAAAAAAGGCGATTTCCCTTGGGAAGACAGCCTCTTCCGA AGGGGCCTGATTGGCACGTGACTGTGTTTTCCTAAGGCCATCTGTTCATAGTGCCCCCTC TCTGGTCCACTTGACTCTCAGAATGCCCCATCATTCCTGACTCATAGGTATGGCTACCCC TAGTGGCTATCCAGGAGCCTCCACCGGATGGCTAGCAGAGCCTTGTTCTAGATGCCACCC CGCCCCCCAGGGGCTGTCTGGTTGCAATGGCCCTAATGAGAGACGTATGTTTGCTTGCTG GCATTAGTTGTAACCACCGTAACGCTGTCTCACGGTACGCGAGTTGTCGTCACACCTAGC AGTGGCCGCTGAGGAGCTCCAGAACTCAGGGTGAGACGGTGTGTTTCATGCCCTGGCTTG GGAAGCTATCAACAGCCGACGTTTTCACGACGACATTAACCTCCCTGCGAAGGACGGGAG AGCTAGGAGGGATTCCCATTCGAAGACCAATGAAGGGCAGATACGGGGCGGCCCGTACCG TGTCCTGCGTCCGCGCCCCCAACACAGGCGCGTGCGCATCGCCGTCTCTCGCAGCTCGCC CCCGCCCTCCTCGTCCGGGTTTTCAAATTTGAAACCGGCAGCTTTTCCCGCCCGAGTCGG GGCCCCCGCGGCGGGAGAAGGCGGGGCCGCGCATCAACCAACCCAGTCTCCGAGGCTCGC GGCCCGCCCGGAGGATGTGGCCGCGTCCCGCGCGCACGTGTAGCCCAGGCAGGCGCCTGC TAGGACCGGCGCGATTGCCTGTCGCAGGAGTGGGGCAGCTTGCAGCGCCCAGTGTCCGGG CTGCCTGACCCGGCGGAGGGTTCTTCCCTAAAGCGCAGAGCAGCAGCCCAGTTCAGCCTG GGCGGGAAGAGGCGGGCTGGGCTGGGCAGGGCGGGGCGGATGGGGTTCCCATGGGCGGGG CGGGGAGGGGCCAGGGCGGGGCGACCGGGGGCGGGGCGGGCCCTGTGCTT
1	EXON 1	55,329,598	55,329,758	-	1	161	GTGGCACCGTGTCAGTTACATTGAAACAAAAGTGGTAAGGCGGCTGACAGGGCTAGCATC CCTAGCCCGCTGGTCGTCGGCTATCGCCGACATGGAACCCGTGGCTAGCAACATCCAGGT CCTGCTGCAGGCAGCGGAGTTCCTGGAGAGGCGCGAGAGAG
	INTRON 1 - 2	55,329,375	55,329,597			223	GTGAGGACAGACCCCGCGCGCGGGC..........TGTTGCTGTGTTCTCTCTCTGGCAG
2	EXON 2	55,329,269	55,329,374	1	2	106	AGGCAGAGCACGGTTATGCGTCCCTGTGTCCACACCACAGCCCCGGGGCCGTCTGCAGGA GGAGGAAGCCACCCCTGCAAGCTCCTGGCGCGCTGAACAGTGGGCG
	INTRON 2 - 3	55,328,644	55,329,268			625	GTGAGCAGGGATGGGGCAGTGTAGG..........CACTTGATCCCCTTGGCATTCACAG
3	EXON 3	55,328,614	55,328,643	2	2	30	GTCTGTGCACAACGAGCTGGAGAAGCGCAG
	INTRON 3 - 4	55,328,485	55,328,613			129	GTGAGTCCCAACCTGGCTCTCAACA..........GCCCTCCAGACTCCTTCCCTTGCAG
4	EXON 4	55,328,370	55,328,484	2	0	115	GAGAGCCCAGCTGAAGCGGTGCTTAGAGCAACTGAGGCAGCAGATGCCCCTGGGAGTTGA CTGTACCCGATACACTACACTAAGCCTCCTGCGCCGGGCCAGGGTGCATATCCAG
	INTRON 4 - 5	55,326,197	55,328,369			2,173	GTGAGGAGCTGTCTCTTGTCTCTCT..........TTCCCTGCCCCCGTGGGTTCTACAG
5	EXON 5	55,326,013	55,326,196	0	1	184	AAGCTGGAGGAGCAGGAGCAGCAAGCCCGGCGGCTCAAGGAAAAGCTTCGCAGCAAACAG CAGAGCCTGCAGCAGCAGCTGGAGCAGCTCCAGGGGCTGCCAGGAGCTAGGGAGCGAGAG CGGCTGAGGGCAGACAGCTTGGACTCTTCAGGCCTGTCCTCTGAGCGCTCAGACTCAGAC CAAG
	INTRON 5 - 6	55,325,899	55,326,012			114	GTGGGTGCACACCCTGGGAGGGGTG..........TGAGCAGACTGGCTTCTCCTTGCAG
6	EXON 6	55,325,168	55,325,898	1	-	731	AGGATCTGGAGGTGGACGTGGAGAGCCTGGTGTTTGGGACTGAAACAGAGCTCCTACAGA GCTTCAGCGCTGGGCGGGAGCACAGCTACTCACACAGCACCTGCGCCTGGCTATGATGCC CACTGCGGCCTGTACTCTCCTTGGACTGAGCCTGCCAGTCAGTGGCCCCCACACAAGTTG GCTTAGAGCCACATGTTGAAGAGACTAAAGCCAAGGTGTGGGAGCAGACTCCAGACTCTG CTGCACAGCTTGAGCTTGGGCCACCCTCCCCATCCCCCAGGGAATTTCATGTAGCACTTG GCCCTGCTTTGCTGCTCCCCACAGGGACAGGAAGCCTCAAAACTTCTTGTTCCTGGGCAA AGCCCCAGGCCTCTGCCCGTATATACTGCACAGTATTTTCATTAAAATCCTCTTTTGTAA GTTCCTGTCCATGGTTTTGCCCCAATGAGATGAAGTCCCTGCCACAACTGGAAGAGAGGA AATAAGGTCAGTAGCTGGCAAAAAGGGTCTTGTGAAGGCAGTGCACATCTGACAGCGTGG AGGATGCTCTGTGGTCCTGATGATGAGGCAGAGTGTGTGACGTGCCTGAGCTCCTGATTC AAACCAAAGCTATCTGACTCCAGAACTGGGGCTAATCAAATCATGTGTTTATTGAGTGCC TGTTATGTGCTAAATATTGTTCAGGGTACTTGGGACACAGCAGAGAATAAAACAAGGAGC CCTGCCCTCTT
	3' upstream sequence						GGAGCGTACAGTCTATCACCTGCGCACTGCTGTGACCTTGGGCAAGTCACTGCACCCCTC TGCCCGGCAGACAGAGCTGGGTGTGGTGCAGAAGCTGACCAGGACAGGGCCCTGACCCAC CACCCCAGACAGCAGAGAGGGCTGCAGGTTGCTCTTTAATAATCACGTACACTGGGGAGA GGGAGAGGAAGCGAGTTATACGAGCTGCCGCTGCTGCTGCTTGGTGGCGGCCTTGTTGGC CAGGTCCTTGGCCTTCTCTGTAGCTGCCAGTGCGGTCTCCTTTGCTTTCTCTTTGGCCTC TTTGGCTGTCTCAACAAGGGTTTTGGAAGGGGCCTCACCTGTGGCAAACGACAGGGTCTA GCTTCAGACAATGCCTGGAAGACCCACCCAAGCCCTGGTCAACCACAGCAGCCATTGTTG ATGGGTTCTTAGGAATGAAGTTGGTGTCCTGTTTCTTGACCCTCCCACCCATCCTTCATA GGCACACTTAGGAGTCTCATTGGTCAAGGCTACTGGGAGTGAGGGTTTCTCCAACTCCTG ACACAGTGTCCAGGGCCCTCACCTTGTAGCTTGGCCAGGATGTATTCAAAGCCCTTCATT GTCTTGGTCACATTGCTTTTGAACCGGGCAAGACCAAATTCCTGGCAGGAGAGGGAGAAG GATGGGAGAGTTACTCAATGACCCAGAGCCGAGCCCTGCCCTGCCCGCCCTGCAGCCTCT TACCTGGACAGCTCTGGAGACGCCAAATAAGCTAGAGGAGACCCAGGCTTCCCGACGGAT TTCGGTCCAGCCGCTATTGTCAGAGTTCACACAGTAAACACATCGTTCCTCCACCACCTT CAAGGGAAGTTGGGCTGAGCACCTCAAAGAAGCACCCTATGCTCTGCTCACTTGCACGCT CACACCCTGTCTCTACCATGCTACTGTCCCTGTCTCCTTCACAAGGGGAAGCAATGACAA AGTTCTTCCCGTTATGTATCCTGGGCCCAGAGGGAGGCTG..........

Sequence Detail Report

Gene Symbol (Gene ID)	Mxd3 (ENSMUSG00000021485)
Transcript ID	ENSMUST00000021941

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 207 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information