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Target CDS Information

Gene Symbol (Gene ID) Prelid1 (ENSMUSG00000021486)
Cross Reference
CCDS CCDS26542.1
EMBL AK003629, AK146857, AK150465, ...show all
Fantom 1110012F09, F630118G24, I830008B10, ...show all
GO GO:0005515, GO:0005654, GO:0005654, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name Prelid1-201
protein_id AAH24813.2, AAH25859.1, AAH98241.1, ...show all
RefSeq_mRNA NM_025596.5
RefSeq_peptide NP_079872
RefSeq_peptide_predicted XP_006544050.1
UCSC uc007qql.1
UniParc UPI0000027C9E
Uniprot/SWISSPROT Q8R107
Definition protein_id:ENSMUSP00000021942
translation:
MVKYFLGQSVLRSSWDQVFAAFWQRYPNPYSKHVLTEDIVHREVTPDQKLLSRRLLTKTN
RMPRWAERLFPANVAHSVYILEDSIVDPQNQTMTTFTWNINHARLMVVEERCVYCVNSDN
SGWTEIRREAWVSSSLFGVSRAVQEFGLARFKSNVTKTMKGFEYILAKLQGEAPSKTLVE
TAKEAKEKAKETALAATEKAKDLANKAATKQQQRQLV

Chromosome 13
Length
Position(start - end)
2,781
55,322,190 - 55,324,972
Orient to Chromosome plus
Link Location : (13:55322190-55324972)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Prelid1 (ENSMUSG00000021486)
Transcript ID ENSMUST00000021942
Reports
substitution
cSNPs0
Insertion8
Deletion5
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num0
synonymous substitutions
non-synonymous substitutions
B6 transcript
(ENSMUST00000021942)
MVKYFLGQSVLRSSWDQVFAAFWQRYPNPYSKHVLTEDIVHREVTPDQKLLSRRLLTKTN
RMPRWAERLFPANVAHSVYILEDSIVDPQNQTMTTFTWNINHARLMVVEERCVYCVNSDN
SGWTEIRREAWVSSSLFGVSRAVQEFGLARFKSNVTKTMKGFEYILAKLQGEAPSKTLVE
TAKEAKEKAKETALAATEKAKDLANKAATKQQQRQLV*
MSMv4 transcript
MVKYFLGQSVLRSSWDQVFAAFWQRYPNPYSKHVLTEDIVHREVTPDQKLLSRRLLTKTN
RMPRWAERLFPANVAHSVYILEDSIVDPQNQTMTTFTWNINHARLMVVEERCVYCVNSDN
SGWTEIRREAWVSSSLFGVSRAVQEFGLARFKSNVTKTMKGFEYILAKLQGEAPSKTLVE
TAKEAKEKAKETALAATEKAKDLANKAATKQQQRQLV*
homology100.00 (218 / 218)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Prelid1 (ENSMUSG00000021486)
Transcript ID ENSMUST00000021942
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GTAACCTAACCCTTACTACTTGAACACGCCAGAATTCAACCCCTTACCAT
AACAGACAATTGCAGCTTTAGCACCCCGGTAATAGATTCTGCTCATGGCTTCGTAGCGCT
CGGAACCTGCTGTGTCCTGAGGGGTGAAAGGAGTTAATAAGCTCCTTCACAAGACTACAA
AATAGGCCCCATCTTCCAGACAACCCCCCCTCCTTTTTTTAGACGAGTAAATGGGTGTGA
GGAAGGAAAAACGACCTCTATGAGGCTCCAGTTGGCTGGTTTAAGAGGCAAGACATTAAA
TTCGGGAAACAGGTTTGCACAAGACTCTGTTCTCAAGGGACTTACCCAAATGCCCAGAGT
CACCGTCCGGTCTCCAACGCACATCACCTTGGCCACGAAAGCAGCCCCGATGGTCTACAA
CCAGGGAAGAGATAAGTGTGGAATACTGGCCGGACCCCTTCCTCCCATGCCTGCTCCGCA
GGGGTGCACTCACGTTCTGATAGGGCCCCACCAAGAAGCGGTCGTGCACGTATCGTTCCA
CCAGGCTCGTCTTGCCCACGTATTCCTTGCCCAGCATAACCACCTTAACGTCCACGCGCT
GCCCGCTCATGCTCCCTGGGCCGCCTCACCCACTTCAGGGTCCGCGCGGCCCAGGCAGAG
CCCAAGCCTCAGACCCCAACCCCAAGGGCCTCGCACCTCGCAGGCCCCTGGCGCCTCGGC
CCCGGGCGCTCCGTCCTTTGCAGAGCCGCGGCGCGGGGACGCGGACAGCGCCCTCCACCG
CGCCGCAGAGCCCTGCGGTGCTCACCCGCACGACCGCCGCTGCGCCGGAAGCTCCGCTGC
GCCGGGTTTACCGACTGAATCTGGGGTCCTCGTAGCTAACTCCAAACAGCACCTCTGGGA
CTGGAAGCCAAGAGGCGGGACGCCCGGTCACGTGACGCGGGCGCCGGAAGTGGCCGATCC
TATGCATCCGGCGCCGGAAGCGTCGTGCAGTCCTATAACCCCTGATGGCG
1 EXON 1 55,322,055 55,322,281 - 2 227
GCGGTAGGGACCTGGGCGCGGTCCTGCGGAGATTGAGCTGCGAGCCTGGCGGGCGTGCGC
CTAGCCACGTCCCCCCCACCCCCGGGCTCTTCACCCTGATGCTGCACGGGTGCTGAGCCC
GCCCGGGTCGGGACGATGGTGAAGTATTTCCTGGGCCAGAGCGTGCTCCGAAGTTCCTGG
GACCAAGTGTTCGCCGCCTTCTGGCAACGGTACCCGAATCCCTATAG
INTRON 1 - 2 55,322,282 55,322,852 571
GTACGTGGCGTTGGGTAGAGCGAGT..........TGAGAATCATCTTTAACTCTTGCAG
2 EXON 2 55,322,853 55,323,078 2 0 226
CAAACATGTCTTAACCGAAGACATAGTGCACCGGGAGGTGACCCCCGACCAGAAGCTACT
GTCCCGGAGACTCCTGACCAAGACCAACAGGATGCCACGTTGGGCAGAGCGACTGTTTCC
TGCCAACGTTGCTCACTCCGTGTACATCCTGGAGGACTCTATTGTGGACCCCCAGAATCA
GACCATGACCACCTTCACCTGGAACATCAACCATGCCCGGCTGATG
INTRON 2 - 3 55,323,079 55,324,330 1,252
GTGAGACTTCCTTTGCTCCCTCAAA..........GTGCTCAGCCCAACTTCCCTTGAAG
3 EXON 3 55,324,331 55,324,444 0 0 114
GTGGTGGAGGAACGATGTGTTTACTGTGTGAACTCTGACAATAGCGGCTGGACCGAAATC
CGTCGGGAAGCCTGGGTCTCCTCTAGCTTATTTGGCGTCTCCAGAGCTGTCCAG
INTRON 3 - 4 55,324,445 55,324,526 82
GTAAGAGGCTGCAGGGCGGGCAGGG..........CCCATCCTTCTCCCTCTCCTGCCAG
4 EXON 4 55,324,527 55,324,605 0 1 79
GAATTTGGTCTTGCCCGGTTCAAAAGCAATGTGACCAAGACAATGAAGGGCTTTGAATAC
ATCCTGGCCAAGCTACAAG
INTRON 4 - 5 55,324,606 55,324,829 224
GTGAGGGCCCTGGACACTGTGTCAG..........AGCTAGACCCTGTCGTTTGCCACAG
5 EXON 5 55,324,830 55,325,271 1 - 442
GTGAGGCCCCTTCCAAAACCCTTGTTGAGACAGCCAAAGAGGCCAAAGAGAAAGCAAAGG
AGACCGCACTGGCAGCTACAGAGAAGGCCAAGGACCTGGCCAACAAGGCCGCCACCAAGC
AGCAGCAGCGGCAGCTCGTATAACTCGCTTCCTCTCCCTCTCCCCAGTGTACGTGATTAT
TAAAGAGCAACCTGCAGCCCTCTCTGCTGTCTGGGGTGGTGGGTCAGGGCCCTGTCCTGG
TCAGCTTCTGCACCACACCCAGCTCTGTCTGCCGGGCAGAGGGGTGCAGTGACTTGCCCA
AGGTCACAGCAGTGCGCAGGTGATAGACTGTACGCTCCAAGAGGGCAGGGCTCCTTGTTT
TATTCTCTGCTGTGTCCCAAGTACCCTGAACAATATTTAGCACATAACAGGCACTCAATA
AACACATGATTTGATTAGCCCC
3' upstream sequence
AGTTCTGGAGTCAGATAGCTTTGGTTTGAATCAGGAGCTCAGGCACGTCACACACTCTGC
CTCATCATCAGGACCACAGAGCATCCTCCACGCTGTCAGATGTGCACTGCCTTCACAAGA
CCCTTTTTGCCAGCTACTGACCTTATTTCCTCTCTTCCAGTTGTGGCAGGGACTTCATCT
CATTGGGGCAAAACCATGGACAGGAACTTACAAAAGAGGATTTTAATGAAAATACTGTGC
AGTATATACGGGCAGAGGCCTGGGGCTTTGCCCAGGAACAAGAAGTTTTGAGGCTTCCTG
TCCCTGTGGGGAGCAGCAAAGCAGGGCCAAGTGCTACATGAAATTCCCTGGGGGATGGGG
AGGGTGGCCCAAGCTCAAGCTGTGCAGCAGAGTCTGGAGTCTGCTCCCACACCTTGGCTT
TAGTCTCTTCAACATGTGGCTCTAAGCCAACTTGTGTGGGGGCCACTGACTGGCAGGCTC
AGTCCAAGGAGAGTACAGGCCGCAGTGGGCATCATAGCCAGGCGCAGGTGCTGTGTGAGT
AGCTGTGCTCCCGCCCAGCGCTGAAGCTCTGTAGGAGCTCTGTTTCAGTCCCAAACACCA
GGCTCTCCACGTCCACCTCCAGATCCTCTGCAAGGAGAAGCCAGTCTGCTCACCCCAGCG
GTCCACTCGCCCCAGCCAGCCACGCTCCCCACTGGCCCTGCCCCCCGCCCCAGCCTCACC
CCTCCCAGGGTGTGCACCCACCTTGGTCTGAGTCTGAGCGCTCAGAGGACAGGCCTGAAG
AGTCCAAGCTGTCTGCCCTCAGCCGCTCTCGCTCCCTAGCTCCTGGCAGCCCCTGGAGCT
GCTCCAGCTGCTGCTGCAGGCTCTGCTGTTTGCTGCGAAGCTTTTCCTTGAGCCGCCGGG
CTTGCTGCTCCTGCTCCTCCAGCTTCTGTAGAACCCACGGGGGCAGGGAATAGGGTCAGC
TGCCCAGGGTCTACAGAGAGGCAGCCATGGAACGAACCCC..........

Sequence Detail Report

Gene Symbol (Gene ID) Prelid1 (ENSMUSG00000021486)
Transcript ID ENSMUST00000021942
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 218 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information