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Target CDS Information

Gene Symbol (Gene ID) Gnaq (ENSMUSG00000024639)
Cross Reference
CCDS CCDS29684.1
EMBL AK147393, BC057583, M55412
Fantom M5C1028J20
GO GO:0001501, GO:0001508, GO:0003924, ...show all
goslim_goa GO:0000003, GO:0003674, GO:0003924, ...show all
MGI_trans_name Gnaq-001
OTTP OTTMUSP00000052744
OTTT OTTMUST00000094727
PDB 2BCJ, 2RGN, 3AH8, ...show all
protein_id AAA63306.1, AAH57583.1, BAE27882.1
Reactome R-MMU-109582, R-MMU-1430728, R-MMU-162582, ...show all
RefSeq_mRNA NM_008139.5
RefSeq_peptide NP_032165
UCSC uc008gwt.1
UniParc UPI00000223E1
Uniprot/SPTREMBL Q3UHH5
Uniprot/SWISSPROT P21279
Vega_transcript Gnaq-001, OTTMUST00000094727
Vega_translation 222443, OTTMUSP00000052744
Definition protein_id:ENSMUSP00000025541
translation:
MTLESIMACCLSEEAKEARRINDEIERQLRRDKRDARRELKLLLLGTGESGKSTFIKQMR
IIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVDVEK
VSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDVL
RVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLV
ESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQR
DAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNLV

Chromosome 19
Length
Position(start - end)
250,067
16,133,326 - 16,383,394
Orient to Chromosome plus
Link Location : (19:16133326-16383394)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Gnaq (ENSMUSG00000024639)
Transcript ID ENSMUST00000025541
Reports
substitution
cSNPs3
Insertion179
Deletion204
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num3
non-synonymous num0
synonymous substitutions 16378162 (p.Arg247Arg), 16378276 (p.Tyr285Tyr), 16383313 (p.Asp333Asp),
non-synonymous substitutions
B6 transcript
(ENSMUST00000025541)
MTLESIMACCLSEEAKEARRINDEIERQLRRDKRDARRELKLLLLGTGESGKSTFIKQMR
IIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVDVEK
VSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDVL
RVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLV
ESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQR
DAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNLV*
MSMv4 transcript
MTLESIMACCLSEEAKEARRINDEIERQLRRDKRDARRELKLLLLGTGESGKSTFIKQMR
IIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVDVEK
VSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDVL
RVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLV
ESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQR
DAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNLV*
homology100.00 (360 / 360)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Gnaq (ENSMUSG00000024639)
Transcript ID ENSMUST00000025541
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TTCTCCTATTTTATTCTCTCTCCCTCCCCCTTTTCTTTGCTACAAGGTCT
CATACTGCTCAGGAAGCAATTCTCCTGCCTCAGCCTGTGGAGTGTGGAGTTTATGGGTGT
GAGTCACCATATCCGTCTCTTTCATTTCATTCTGTACTACTTGGCGTTCTCCCAGAAGTC
ATCCTTAACTGTCACGGTGTAGAAGGGTCAATCCTACATTACCAGACTGTTTAACGTAGT
GTGCTGGTAGGAAAACAGAAACCACCTCAGTGACCCGAAAAGTTGGAACGGATCAGGAGG
CTCTTGGAAACTTGGGCAGCTTCGTTTTTTCTGTTTAGGATTCAGATTCCTATCTGGAGA
TAAGGAGGACAGTTCCGTCCACAGATCCCTCAGTAACCCCCAGAGAGCCAGTGACAATCC
TTTCTCTTCCCTAGTAAAGAGCATCCCATCTTCTAAGATGGATCTTGGGTCAGAGGCCAC
TCGAGGCAGCTTCTTCCCAATGGCGTTTTAGAAGTAGGAAAGGGCAGCCGGGCTGCAGAG
AGGCCCGGAGCGCAGCGTGTGGGCTCCCGGCAGGGCTCCCGCAGCGCCAGCGGCCAGAGG
GCAGGCCGAGGCCGCCATATTCTCGCCGACCACGCCCCGGCAGCCCAGCGGCAGCCGAAG
GTCGGTGTCCGCCTGCCGGACCCGCTCCAGCGGCCGTGACCGCCGCGCCGGAGCTCGCAC
AGAGGGAGGCGGCCGGCGAGCGGGGCGGGCAGTCGGGGGCGGGGCGAGGAGAGCGCGAGC
TGTCCAGGAGGGGCCGCGGTCCCGCCCCTTGCGCTGTGCCCGCCCCCTGCGCCCGTCCTC
CTCCTCCTCCTCCCGCCGCCGCCGCCCCCTCCCGGATCTGTGCTCCAGTTCAGAGAAAGG
AGAAAATGTGTGTGTGTGGCGAGGGGGAGGGCGAGCACTGAGCAGCCGCGGCGCGCCTGG
CAATCGGGCCGGGTGGGCGTCCGGCGGAGGCGGGGGCGGAGGCGGGGAGC
1 EXON 1 16,132,831 16,133,461 - 1 631
GCGCGGCGGCCGGCTGCCCGGTTTGCGAGCGAGCCGAGTGGGCGCGGGCAGGCCGAGGGC
GCCCGGAGCCGAGTCAGGCGGCGGCGGCGGCGGCGGCGAGGAGCGGGCGCGCCGGGCGCG
CTGAGCCGTCGGCGGTCGCTCGCTGCGGGGCCGCCTCGGTGGATGAGCTCGGGCCGCTGG
GCGCACAGCCTTGGGCAGCGTCGGCGGCGGCGCCTGGAGGGCCGCGCGCTCTCCGAGAAG
GCGGCGTGTGAGCGCGGCGGGGCGCGGCGGCCTTTCCTCGCGCGTCCCAGGCTCCCGGCC
CCGCTCGTTCCCGGCCCGCCTGGGCTGCGGGCCCGGCCGCCTCTTTTACCGCGGCTCCCC
TGAGCTCGTCCCTGACGCGCGTCCGGGCGGCGGGGCTCCGCGGCCGCCGCTGCCTCGGGG
GAGCGAGGGCGGAGGGCGTGTGTGCGCGCGTGTGAGCAGGGCGCCGGCGGGGCTGCAGCG
AGGCACTTCGGAAGAATGACTCTGGAGTCCATCATGGCGTGCTGCCTGAGCGAGGAGGCC
AAGGAAGCCCGGAGGATCAACGACGAGATCGAGCGGCAGCTGCGCAGGGACAAGCGCGAC
GCCCGCCGGGAGCTCAAGCTGCTGCTGCTGG
INTRON 1 - 2 16,133,462 16,219,587 86,126
GTGAGTGCGGCCCTTGGGCCCCGGT..........TCTGCTGCTGCCATTTCTATTCCAG
2 EXON 2 16,219,588 16,219,772 1 0 185
GGACAGGGGAGAGTGGCAAGAGCACCTTCATCAAGCAGATGAGGATCATCCACGGGTCGG
GCTACTCTGACGAAGACAAGCGCGGCTTCACCAAGCTGGTGTATCAGAACATCTTCACGG
CCATGCAGGCCATGATCAGAGCGATGGACACGCTCAAGATCCCATACAAGTATGAACACA
ATAAG
INTRON 2 - 3 16,219,773 16,316,016 96,244
GTAAGTGCACTCTTTGGAACAGTTG..........GCTGCTGGTTTTGTTTCTTAAACAG
3 EXON 3 16,316,017 16,316,171 0 2 155
GCTCATGCACAATTGGTTCGAGAGGTTGATGTGGAGAAGGTGTCTGCTTTTGAGAATCCA
TATGTAGATGCAATAAAGAGCTTGTGGAATGATCCTGGAATCCAGGAGTGCTACGACAGA
CGACGGGAATATCAGTTATCTGACTCTACCAAATA
INTRON 3 - 4 16,316,172 16,332,076 15,905
GTGAGTATCTGCACACCAGGCCTGA..........ACATTCTCATGTCTTCCTCTTCTAG
4 EXON 4 16,332,077 16,332,205 2 2 129
CTATCTGAATGACTTGGACCGTGTAGCCGACCCTTCCTATCTGCCTACACAACAAGACGT
GCTTAGAGTTCGAGTCCCCACTACAGGGATCATCGAATACCCCTTTGACTTACAAAGTGT
CATTTTCAG
INTRON 4 - 5 16,332,206 16,334,980 2,775
GTAGTAACTGAGTTCATTAACACCT..........AATATAAATATTGTTAACCTTGCAG
5 EXON 5 16,334,981 16,335,110 2 0 130
AATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAA
TGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTC
AGACAATGAG
INTRON 5 - 6 16,335,111 16,378,156 43,046
GTAAGTACCCTTTGGATGGATGGTG..........AATTTCTGATTTTTTTTCCCCCCAG
6 EXON 6 16,378,157 16,378,310 0 1 154
AACCGAATGGAGGAGAGCAAAGCACTCTTTAGAACAATTATCACCTACCCCTGGTTCCAG
AACTCCTCTGTGATTCTGTTCTTAAACAAGAAAGATCTTCTAGAGGAGAAAATCATGTAC
TCCCACCTAGTCGACTACTTCCCAGAATATGATG
INTRON 6 - 7 16,378,311 16,383,203 4,893
GTAAGTGGCCACCCAAGCCAGCCTC..........TGCATCTCCCCTCTCTTGCAAACAG
7 EXON 7 16,383,204 16,387,463 1 - 4,260
GACCCCAGAGAGATGCCCAGGCAGCTCGAGAATTCATCCTGAAAATGTTCGTGGACCTGA
ACCCCGACAGTGACAAAATCATCTACTCCCACTTCACGTGCGCCACAGACACCGAGAACA
TCCGCTTCGTCTTTGCAGCCGTCAAGGACACCATCCTGCAGCTGAACCTGAAGGAGTACA
ATCTGGTCTAACCGTGCCTCCCAGAAACCGTTCTTCCCTCCCCTGTGGGTTGTTGAAGAT
AAACAAGAGGGACTGTATTTCTGTGGAAAACAATTTGCATAATACTAATTTATTGCCGTC
CTGGACTCTGTGAGCGTGTCCACAGAGCTGTAGTAAATATTATGATTTTATTTAAACTAT
TCAGAGGAAACAGGATGCTGAAGTACAGTCCCAGCACATTTCCTCTTTTTTTTTTTTTAG
GCAAACCTTGATGTATTTTAAATTTTCAGTCATTCACTCACAGTATAAAAGCACTCCTGT
CATTCGTGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCCCTCCCTCTCTCTCTCT
CTCTCTCATTCCTTTCCTTCTTCCTCCTCCCCTTTCCTTTTGACCAAAACGAAGCTGATT
TTTCTTCTTCCTGCTCCTTCCCTCCCTGCTGATTTTATTCTCCCTCACTACCATGGCCTT
GCCCCCAATCCCATTCTTGGCCAGTTTCCCCCAATCCCATTCTTGGCCAGTTTCTCCCAT
CGAGTGACGTAGTCAGGACGGTGTTATTCGACTGAAGCCGCCTTACGTCAGCTTCCTTTA
CCCGTGGGTCTGCTGAAGGCAGGAGCATAGGTGTTCGTACTATGGTTTTAAATGGTTCTC
TGGATGCACATCACATCTAGCATTTCTTTTTCAATACATACATACATACATACATACATA
TATATGTATACTATATATATTGTCTTGTCTCACTTGCACTAGGACAGTGGGTGCCCATTG
ATGATCAAGAGTCGTATCTTTTGGGTGCAGACCTTCAGCCACAGCAGGATTGTTAAGAGA
AATGGATGGAGGTCAGGGTGTGAGGGCACAGGCTGGGAAGAAGTCCTTGCTTCTCGAGGC
CACGTACCGGCCGCGTCCTTCCACCCTTGCCCTTTAAACCACAGATGCCAAATGATACGC
CAACAGACACTACATTCCCCAGCAGCTGCTGCCAGAGCCCTCTTGTAGCTTCTTTATTTT
CTGTTTCTTTCCAGCTTTCCTACCCTCCTATCCCCCCTTGTGTTTGGGCCACAATTTTGA
AATAATTTTTATTATAGGTATGTGCTGCCAAAGCCAGATTTTTATAAGGTAAAATAAATT
AAGAATTTAAACAGTAAAAGCCAGTGTCTCAAAATGTCAGCATTAAGATGTGAAGGGGAC
AGCAGGGTGTGAACCGGAAACACACATTGCCAAACAGTTGCCAACTGAACTGCTGCTTCT
CATGGTCCGTTCTTTTCTTTGCCCTTAAGGTCAATGCCAGTGTCCAGACGAGCAGTGTAG
AAAAGCTCCCTGTGTGGTTTGTCGTGAGGTCTGCTTGTATCTCTTCACTGGCGTTAGTTT
CATTAGCTCTTTATTCTCCTTACGTTCGAGTGAATCTGCCAAGAACACTGGTGGATAGTA
TTATCCTAACACTTTTGGTTTGGGGGCGGGGAGGGGGCAGGGAATAGTGAGCTGGCTTTA
CCACCTTCAGGATCTCGAATTGGGCGCTTGAACCTAAGAAAGATTGTGGACTTATCAAAA
GTCACCGCTCAGTGTTCCGTCAAGCATGTATTTATGTGACGATCATACTAGGAGAGATGT
TTGGAATTCTCCATGTGCAATTTGTCCGCAGATGCAAACTGTGCCGAACGTGTGTGAGTG
AGCCTGTCAAGCAGCCTGCATCAGTGTGTGATTTAAGTAGATGGCGAGCGCTCTAAGGCT
GCCGGGAAGTCAGACCTCGATGCTGGTCTCATTAGCGCTTGGCACTAATCTCAACTCCAT
AGACATCACTTTTCTTGAATAGCAAAGCTGGGAGAGTGACCAGCTCACTGTATGAACACG
GAAATTGCTGACTGGTAATGAAGTGCTCTCATGTGTTACTCTCCTGGCTCTTTCATCCCT
TGCTCTAGAAAGCCCCTGTAATTTAATTAACAGACTGCCTGTAGGTATAGTGCAATTATG
AATGCTCTGATCGTTGTACATACATCTCTCTTGATATTGCAACATCCATACTGGCTTTGT
AATCATTAATTTTTTGGCAGATTGAATGTGCTGTATTGATATGTATCTATGTAATTGTAT
GTCTTATAGCTAATTCACATTTTGAATAATGTTATTTTATTTACTTTTTTAAGAGAGGAG
AATGTAAATTTGTCAGTTTATTTCTGACTAGGGATATTTTTTTCCATTTAGAAAAGAAGA
AAAAAAAAAAAACCCTTACTATTGTACAGAGCGGTACTAGCATCGTGCTGTCTAAAATCA
TTTGCACATTCCTGAGTAGAGGTGTGCTGACCTAAGACCCAAAGGTAATTTCATAGCAAA
CACACACCATCCGTCAGAGCTTTTATACAAACACGGAGACCAACTTTGTAGACCTTTTGC
CATTTGACCTGGGGTTGGAATATGAGCTTTTATACGATTCATATTCTTATTTGGCAAATG
CACAGTTTAGCATTACCTCTCTGGTGGCCTTTATTAGAAAGGCAGTTTTAGAAGCTATTT
GTGATCCACTAAGGAAATGTTTTATCAGCTAGAGACCACTGCTTGCCTGAAAGGGCAACC
TTAAATTTGGTGCAGCAAAAAACAAAAAAACAAAAAAAACAAAAACAAAAACAAAACAAA
CAAAACAAAAAATAAAAACAAAAAAATTTAAAAACACAAAAAGACAAAAAAGAAGAAAAA
AGTAACATTTGATGGCCTGCAGTGTATAGAGAAAACCTCATCCCAGGATCATAAGTGTTA
ACCGTCCTAAGGAAGCGAGCTGTTCTGTCTAATAGAGCTGTAGTGGATGGAGCTGAGCCG
TGCTGATACCAAGCTCAGAGCTGCTGAGTAAGGCAGGGAGAGGTGGCCACGTTGTCTTTA
TGAATTGAGGATGCAGCTTGCTGCTGCACAGAGTTGAAGTCTGGCCTCACTGCACATCCT
GGGGTGCATGACAGAGTCCCTTCTTCTGAGAAGGGAAAACATTGATCACCCTAGCTGCAG
TGGTGCCTGCACACCTTACTCTATCCACACTAGTCAATGAAGCTAAAACTAATTTTGTTG
TTGTTTCTCGTTTGGGGTTTTATTGAAGGGGTGAGGGGCGGGAAGGGCTTCTTAGTTTTG
TACAAAAACAAAGTTTACTCATATGCTTTCTCTTCTATTGTGATTGCAAGTGTTCCTGTT
GTCGATGCTCTAGGTAATGGAGGCTTGTGATGAGCGTTATGGTGACTTGGGCATGTCTTA
TTCAGAAGCAAAACACAGACCACAGAAACCTTTCCTCAGCATACCAAGGCAAGCAGCCAT
CTCATGAGTCACTCAGCACATGAGTGTGCCGTTTACAGATGATGTCGCCCTTTTGTGTGT
GATACGGCAGTTCCCACCCACAGAGAATTCCTATTTGTAAATTGGAGGTTTATACTATGC
CTTACAGAGCTTAAATTCAGAAGTCTGTGCCTCATGTCTGAAACAAAGGGAAAACGCACG
CCCATGCAGAAGTCAGTTAAGTCTTACAGAGCCTGTTGGGTTTTCCTTATCGTTTCCTTA
GGAAGAGCTCTGTTGAATGTCCTGAGTAGCTGGGAAATTCTTCTTAGGAGCCTGCGTATG
TTGTTTACTGGCAGGTGGCATCCACGGCGATATTTAAAGAACACCTGGAACTTGGGGGCT
TGGGGGCTTTGTTTTGTTTTGTTTTTGTTTAGATTACATTAGCAGGCCTAATCATTTTAA
AGGGTAATTCAGCCAAAGGGCAATTTACTTTTTGTACTTCAGACTTCTATTGATTGTCAA
GTTGTACGAATTGTAATTTAAAAATTTATACTGCCACATGATTGTAAATTTTAGTTGTCT
TAAGTAGGAATTGGTGAAAAGCTGTTTATGCTGGATTTGGGTCAAAATGACTTGATTATT
TGCAAAAAATAAAACTAATAATGGGAAGAAAGGGCTGCATAACAAGACACCGCAAGACTC
AGATTCCCTCAGATGACCCCAGCGCCCCTTTGTTCTCAGTTTCTCAAAAGAACGAATGAA
GTGAAACATAGCAGAATGTTAACCCATATAAAATAAAGTGTACCCAAATATTGTAATGTA
3' upstream sequence
TATCGCTGCTCTTCTTAAAATTACGTAAGGCTTTCAAGCCACTCACATGGTAACTAACAG
CATCTCGATTGATACAACTAAGGTGTACTTGGACATACTTTAATATTTGATTCAAAAGAG
AAACCTTTGGTTAGAAACACATACAAAAGTGGAAGCTAATAATGTGTGTTTATCTGTCTC
CGCACTCTTCCAATATAGGCAGCATTCCTAGATGTCCTGGCACTTGTGTCTTTGAGATCC
CATTGTGGTTCTCTCGACAGGAGAAACGAATGCTTACTTCTGTGTGATTAGGCCAACGTT
TGGGAAGCCGGGCACCTGCCATCCCACAGATAACCTGCTGGACGTCCACACTCTGTTCTT
CTCGCAGTTGTCCTGTTTGCCACCATCCCCCCCGCTTCCGCCACCCTGCAGTAGCGTTCT
TGCCTCTAGAGTCACCTGTCCAGAGTATGCATGCACACCTGATGCACAGTAGGTGCTCAG
ATACGTCCTCCCCACTCTCATATCTACTATGGAGACACCCATCACGCCATACAGTTTAAA
CCCAAAGTTGAATAACATTTTCGTGTTACAAAACCAGACACGAGGTAAAATTGGATCTTA
CTTAGATAAAGGAATTCTGTCTTTCATGGAAGCTCTGGCAGCCAGGAAGAGAACGCAGGG
AAATAGATCATTCAGCAAGCCGTTTGTAGGATTAGAAAAGAAAGTGGAAAAAAAACACTA
TGTAAGTTTGTAGAGGTCACTCTCATTGAAACACGTTTCTGGCGGATTTCCTCAAAGGAT
TCTAACAGAAGCCTCTTGCCAGGCTCTGCATCCACCCTCATGTTGGAAGCCCTGACTAGA
TCTGTGTACTTAGGGAGTTTTGTCAAAAACATTTTTAACTTGCAGTATTTAAAAAAAAAT
CATATTTACTGTTCTTAAAATGTCATTCAAATGCATGTATTGTCTATTGTTTGGGGATGG
GAACTAGTTTTTCAAAAAAAAAAAAAAACACACCTAATGT..........

Sequence Detail Report

Gene Symbol (Gene ID) Gnaq (ENSMUSG00000024639)
Transcript ID ENSMUST00000025541
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 360 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information