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Target CDS Information

Gene Symbol (Gene ID) Gna14 (ENSMUSG00000024697)
Cross Reference
CCDS CCDS29685.1
EMBL AK160808, AK168498, BC027015, ...show all
Fantom 3321402J02, I920028G22
GO GO:0001664, GO:0003924, GO:0004871, ...show all
goslim_goa GO:0003674, GO:0003924, GO:0004871, ...show all
MGI_trans_name Gna14-201
protein_id AAA63304.1, AAA83222.1, AAH27015.1, ...show all
Reactome R-MMU-109582, R-MMU-1430728, R-MMU-162582, ...show all
RefSeq_mRNA NM_008137.4
RefSeq_peptide NP_032163
UCSC uc008gwu.2
UniParc UPI0000022406
Uniprot/SWISSPROT P30677
Definition protein_id:ENSMUSP00000025602
translation:
MAGCCCLSAEEKESQRISAEIERQLRRDKKDARRELKLLLLGTGESGKSTFIKQMRIIHG
SGYSDEDRKGFTKLVYQNIFTAMQAMIRAMDTLRIQYMCEQNKENAQIIREVEVDKVTAL
SRDQVAAIKQLWLDPGIQECYDRRREYQLSDSAKYYLTDIERIAMPSFVPTQQDVLRVRV
PTTGIIEYPFDLENIIFRMVDVGGQRSERRKWIHCFESVTSIIFLVALSEYDQVLAECDN
ENRMEESKALFRTIITYPWFLNSSVILFLNKKDLLEEKIMYSHLISYFPEYTGPKQDVKA
ARDFILKLYQDQNPDKEKVIYSHFTCATDTENIRFVFAAVKDTILQLNLREFNLV

Chromosome 19
Length
Position(start - end)
172,835
16,436,694 - 16,609,530
Orient to Chromosome plus
Link Location : (19:16436694-16609530)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Gna14 (ENSMUSG00000024697)
Transcript ID ENSMUST00000025602
Reports
substitution
cSNPs7
Insertion120
Deletion172
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num6
non-synonymous num1
synonymous substitutions 16533780 (p.Ser64Ser), 16598993 (p.Ser121Ser), 16603297 (p.Pro166Pro), 16603334 (p.Arg179Arg), 16604963 (p.Arg198Arg), 16604969 (p.Val200Val),
non-synonymous substitutions 16598991 (p.Ser121Pro),
B6 transcript
(ENSMUST00000025602)
MAGCCCLSAEEKESQRISAEIERQLRRDKKDARRELKLLLLGTGESGKSTFIKQMRIIHG
SGYSDEDRKGFTKLVYQNIFTAMQAMIRAMDTLRIQYMCEQNKENAQIIREVEVDKVTAL
SRDQVAAIKQLWLDPGIQECYDRRREYQLSDSAKYYLTDIERIAMPSFVPTQQDVLRVRV
PTTGIIEYPFDLENIIFRMVDVGGQRSERRKWIHCFESVTSIIFLVALSEYDQVLAECDN
ENRMEESKALFRTIITYPWFLNSSVILFLNKKDLLEEKIMYSHLISYFPEYTGPKQDVKA
ARDFILKLYQDQNPDKEKVIYSHFTCATDTENIRFVFAAVKDTILQLNLREFNLV*
MSMv4 transcript
MAGCCCLSAEEKESQRISAEIERQLRRDKKDARRELKLLLLGTGESGKSTFIKQMRIIHG
SGYSDEDRKGFTKLVYQNIFTAMQAMIRAMDTLRIQYMCEQNKENAQIIREVEVDKVTAL
PRDQVAAIKQLWLDPGIQECYDRRREYQLSDSAKYYLTDIERIAMPSFVPTQQDVLRVRV
PTTGIIEYPFDLENIIFRMVDVGGQRSERRKWIHCFESVTSIIFLVALSEYDQVLAECDN
ENRMEESKALFRTIITYPWFLNSSVILFLNKKDLLEEKIMYSHLISYFPEYTGPKQDVKA
ARDFILKLYQDQNPDKEKVIYSHFTCATDTENIRFVFAAVKDTILQLNLREFNLV*
homology99.72 (356 / 356)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Gna14 (ENSMUSG00000024697)
Transcript ID ENSMUST00000025602
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GAATATGGGTTTGATCAAATGAATGGGAACACTAAAGGGTTCCGGTAGGT
AACAAGGGTTCCGGTAGGTACCGCCAAGTTCGCCAGGGACGATCTGTTAGGATCTGTTTT
GGAAGGCTAGTAACTGGAGACTGAACAGGTCAGTTAGTCCAGTTAACTTGGAATTCAGGT
TTGCTCTGGATTTAATATCTGTGGAAGACTAAAAGCCGTGATTGAGATGTTAGTTTGAGG
AGCCAATGGTGGTGTTCTCAACACCTGTAGGAGCTAAAGGAAAAAGTGGGTGACAGATTA
CAGAGAGAAAAAAAATCCAGAAACTTTCCAGTAGGGGACACTGTTGTCGTCAATTATGCT
TGGAAGGATACTAAAATACAGGGCATTTTAAAGCCTGATTGGTCCGCACTTCTTAAACTG
TAAAGTAAATAAGACTTAGCAGCCAGATAGCATTAGCTGCCAAGTTCTTATATAATGACC
ACAGCGCCCCACTCCTGCTTCCATTGCTCTTCACGGAGGAAGAATTAGCGTCTGATTCCG
TAACCGTGCACATGTCATATGCCAACTTGAATAGAAGGCAAAGAAGATTTGCTCTGGTCC
CGAGGATCCCTTATCCGCACCTTTAAATCTGCACAGACAAAATCAGGGTAGTTTGCTTTG
TGCAAACTTTGTGCATTTGAGTTGTCAGGGGTTCTTTCAGATTTCCTACATCCACACGCA
GAGTTCCAGGAGCTGTCCCGAGGCGGCAGTCTGGCTGCAGGGCTGGGCAGGGAACTGGCC
AGGTGTGCCGGGAAGGTGCCAACTCTTTCTACAAACAGAAGTCTTTTCCATCATCAAATG
CAAAGCAGCCAGCCGTTTTCCTTCACCCCTCCAGTCCCTGGCCCCCTCATCCGGTGCCAG
GAGGTAGGACCGGCTGGGAGGCGTTAACTAGCCCTCTGCTCTTTTGCCAGACCCCGGAAG
GCAGCTGCAGTTCCTACGCCAGCCAGCAGGCCCATCTGCACTAGGCAGGC
1 EXON 1 16,435,667 16,436,817 - 1 1,151
AAGCTACAAGCTGACCCAAGGCTTGCGCTAAGCCCAAATAGAGTTGTGGCATCCGGGAAG
CAGAGGGAGCCAGTCTAGAAACCCCAAGTGTGAGCGGTGGAGAAGCTGGTGGGCAAAGCT
CAGCCTCAGGTGGGAAAAGAGGCCTGAGCCTAGCTGCTGGCATGCGGTGTGTGAACGGGC
TGCAGACGTTTGGCTCGGGTCTGCTAGTGCGCTGCCTCCACCCCTGGCACTGAGGCTGGG
AGTTGACGAAACTCCCTCACCTGTCGGAACCCGGATCTGGCAGCGGGAAGGGGGCTGGCA
GCCAGTGTCTGCTGGTTACAGCAAGCTTGGCAAGTGGCCCTGCCTGCACTAGGGCGCCAC
CGCCAAGGAGGCAGGTGTGAGACTACTCTGCGACCCAGCCTCTTGTTGCTCTCTTTTGTC
CCCAGGCACCGTCGGTTTGGGGTAAGTCTTCAGGCAACTCCTGCAGCCTTGGCTGCAGGT
TCGAGACGCCCCGCCTCCTCCTGTCACATAGAGCGGCCAGTGCTGGAGGAACCTTCCATT
CCGCAAAAGTCTACGGGTTGAGGTTTTCGGAACTTTGCAAACAGGGACTAGCTGGCCCTT
TATTTGCAAGCCAGGCCACACCTGCTGCTAGCCTGCGACATCCTACAGTCCCGGAGAGAC
CATTCTAGCAGCAGCACCGACGCCCCAACTTTTGATTCGCGGTGTGCGTTGCCTACCTGG
GTACCCAGCTACAGTGTCCGGGGACGCACATCTTCTGGAGACAGCGCCAATCACACTGCC
CAGTTCGCTCTTCTCTCCCTCCCAAGCGCGGGGTTGGGTGCCTGATCCCGGACCACACAA
GCGCTCAGGACTCGCCTGACCTCGGAACTGCCTTCGAGAAAGCGTTAGCCTAGGAGATCC
GAGACTCTTTCTCCATACTACAGTTGGTTCAGGTGGTTTCCTATTCAAACCTTGCGTCTG
GCGCGGATAATCCGCGCGGCCGGGCGTTAAGCTCCAGGTCCCTGTCGCTCCGTCGAGGTG
GCAAGCCATGGCCGGCTGCTGCTGTTTGTCTGCGGAGGAGAAAGAGTCTCAGCGCATCAG
CGCGGAGATCGAGCGGCAGCTTCGCCGCGACAAGAAGGACGCGCGCCGGGAGCTCAAGCT
GCTGTTGCTGG
INTRON 1 - 2 16,436,818 16,533,712 96,895
GTGAGTGGCCGCCTTTATCCAGCGC..........TCTTCACTCATTGTTTTTCTCTTAG
2 EXON 2 16,533,713 16,533,897 1 0 185
GAACCGGTGAGAGTGGGAAAAGCACCTTTATCAAGCAGATGAGGATAATCCATGGGTCTG
GCTACAGCGATGAAGATAGAAAGGGCTTCACGAAGCTGGTTTACCAAAACATATTCACGG
CCATGCAAGCCATGATCAGAGCAATGGATACCCTGAGGATACAATACATGTGTGAGCAGA
ATAAG
INTRON 2 - 3 16,533,898 16,598,939 65,042
GTACTGTACTTGAGAGGGTTGGCTA..........GTGGTATTTCCTTTCCGTTGGACAG
3 EXON 3 16,598,940 16,599,094 0 2 155
GAAAATGCCCAGATCATCAGGGAAGTGGAAGTAGACAAGGTCACTGCACTCCCCAGAGAC
CAGGTGGCAGCCATCAAGCAGCTGTGGCTGGATCCCGGAATCCAGGAGTGTTACGACAGG
AGGAGGGAGTACCAGCTGTCAGACTCTGCCAAATA
INTRON 3 - 4 16,599,095 16,603,263 4,169
GTGAGTACTCAGCTGGCAGCTGCTG..........GCATCTTGACTCTTTAATGTCACAG
4 EXON 4 16,603,264 16,603,392 2 2 129
TTACCTGACGGACATTGAGCGTATCGCCATGCCTTCTTTCGTGCCAACACAACAGGATGT
GCTTCGTGTTCGAGTGCCCACCACTGGCATCATAGAATATCCATTCGACCTGGAAAACAT
CATCTTCCG
INTRON 4 - 5 16,603,393 16,604,962 1,570
GTAAGTCTGTCTCCAAGACAGCGTC..........TTGACTGTCCACCTCTATTGAGCAG
5 EXON 5 16,604,963 16,605,092 2 0 130
GATGGTAGATGTTGGTGGCCAGCGATCTGAACGACGGAAATGGATTCACTGCTTTGAGAG
TGTCACCTCCATCATTTTCTTGGTTGCTCTGAGTGAATATGACCAGGTTCTGGCTGAGTG
TGACAATGAG
INTRON 5 - 6 16,605,093 16,607,982 2,890
GTATGTTGGGTTTTGGGAACTTAGA..........CTTACCGTAACCTGTTTCTCACTAG
6 EXON 6 16,607,983 16,608,136 0 1 154
AACCGCATGGAGGAGAGCAAAGCCCTGTTTAGAACCATCATCACCTACCCCTGGTTTCTG
AACTCCTCCGTGATTCTGTTCTTAAACAAGAAGGATCTTCTAGAGGAGAAAATCATGTAC
TCTCATCTAATTAGCTACTTCCCAGAGTACACAG
INTRON 6 - 7 16,608,137 16,609,339 1,203
GTAAGTTACGCCTTCGGGGAATGGT..........CTTCCTTTATTCTTCTCATGACCAG
7 EXON 7 16,609,340 16,610,818 1 - 1,479
GACCAAAGCAAGATGTCAAAGCGGCCAGGGACTTTATCCTGAAGCTGTATCAAGACCAGA
ATCCTGACAAAGAGAAGGTTATCTATTCTCACTTCACTTGTGCTACAGACACCGAGAATA
TCCGCTTTGTGTTTGCTGCTGTCAAAGACACAATCCTACAGCTAAACCTACGGGAGTTCA
ACTTGGTGTAAATGGAGGGCCTACTCCTCCGAGACAGAGGGTGATCTGAGCCCTTCCTGC
CTGATCTACAAGTGCTTCTGGACCAGGACCTAAGGACATTATGTAGCCCACAGGGACAGA
GATGGGTAGTGCAATGTGAAAAATACTTCACCAACCCTTTTAAGTGTCTTTAATTCTTCA
CTGTCTAACTCTTTTCTCGCCTTTTGGTTGAACGATTAGGTATCATTTTTGAGTGGTTCC
CCCTCTCCTATTTTTAAACTAGTGTTCAACAGCTATTAAAAATCATGCAAAAAAATTCAT
GCAACAGAGGGACTTGTTAATTTACAAATCATGCCTTCAGACCTCTGAGATTCATTTAGG
TGACTTAAACATCTTCATTGGTTTGATAATTTTAAAATAAATCTTTTAAGAAACTTTTTA
AACATTTCTTCCCCTTAATGTTGAAATATGACTCATGTAACAACTTACTAAACCACCAAA
GACTTCTTTCTATGCCTTTTTTTTGTTTGTTTTTTAATTTTAAAAACAGGGTCTTAAGTA
GCCCAGGCTGGCTTCCAACTCAAATTTGCTGTGTAATTGAGCATGGCCCTTGGTCCTCCT
GCCTGGCTGTTCCATGCTTAGCTAAGATTTTCTTCTTTTCTGAGACAGGGCCTCACATAT
TCTTTTCTGGTCTCAGACATGCTATGTGGCCGAGGATGATGACACTGGGCTTCCGGTTCT
CTTGTATTCATATACACAACCTATTTAAGACAGTTCTCACACTGTTGCCAACTCCTAGCA
TTAAGAGGTCTCCAAGAGTGTGATTGCACATTGATATTTACAGGTTAGTAATGCTTGGAT
GGATGTGTCACAGGATCAGTTATATGATGCTTGGGATGGGTCCCGGGCGTTGTGCATGTT
AGGCAAATGTTCTGCCAACCGAGCTACATCCCAAACCAAAGATTTCTTTAAAAAGCAGTT
CTTTCCATGTCAACTTTCTAATCCAAATTAATATTATTCAAACATTGATTTTTGCCACAA
TCTGATAAAACCAACTTTAGATACTGCATGTGTGTATGTCCTAATGCGTATGGCCAGGTC
TTACAGCTTATGGAATGGCTAAAGCAGAACTTGTTAACAGATGTCATGTAAACCTTGCCA
AAGCTCTGGTGGCAATCTCCAATGTGCTGTTTGAACTGTGTGCGCCGTGCCTTTCTGGAT
ACTAAGAATACACTGTTCTACCCTGAACACCAACGATGATGTGCTTCTTAGAGCTCGTGG
CTGATCGTTTTGTTCAAAAGAAAACGTTAGTTTTAACGG
3' upstream sequence
TTATACAGCTTCTTTGATTCCTTCCTTTGAAATAGTCTTCACTCATCATGGTGTGCTGGA
GCTCTTTCATGGCTGGCTCAGTAAATGGTGCAGGTCCTGATTCCCAGGAAGCAGAGTACT
GCATCATACTTAAGGGCTCGGGTGGCTTCGCATGGACTGCTGACCCATAAGTATGTCTGT
ACTTACTTACGGATGGTTTCATCTCTCACCAATCTTCAGAGGTCTCCACCTTAAAATGGC
TCAGCATGTACAACAGTGAGAAAAGTGACATGTATCCAGTAGAAACTGTACTTTGAAATA
CGATCCTTTCTCAAGCTAGTGATTTTTGGCCTGGTACTCTCGAGAGAGACACACTGGGCA
GTTGTAAGATGCAGCTCCCAGCCAGCCATAGCATGAGGGGTAGCCTTACCTTCTCCATAG
TGCACTGCTGGACTGGAGGTTCTAGAGGGTCAGTACACTACATGTATTTTCAGCTTCAAT
GCTTTTGGTCAGTGTGGGATTACATAGTTAATTCTGGGACTGGCTACATCTGTTGCAGAA
GCACATGGCTTAATTCCTAGACCTGAACTAAGAAGCCATTCCTTAACCCGGTGCCTGGAC
CTCCACATTGTCAATTTGTTGGAACAATTTCAAGTGTGAAACCATTCTACCAAAGTAGCA
TTCTGTTTAAAAAGTCAGTCTTCACTCCAGGCAGAAGAACTGGACAATCAGATGCTAAAT
CTTATTTGAAACAATTAGTCATCAAGGCAGAGACAAAGGAGGAGCTTCTCAAGACATTGA
AAATGGCACAGCCAGCACTCACTCTCCTGATCCCTATCACGGGCCACTACACTAAAAAGC
AGCATACCAATGTAATCAGAACTAACGGGTCAAACAATGGGGGATTCTTCTTTTCAAGTA
TTTTCTAGCACTGAGCTACTGACAATTTAGCTTTTGGCTGACATACAAGAAAATGATTTC
TTTCGTTGCAAGGCAGTTGTGGATGGAGTAAGTCAAATTT..........

Sequence Detail Report

Gene Symbol (Gene ID) Gna14 (ENSMUSG00000024697)
Transcript ID ENSMUST00000025602
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 356 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information