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Target CDS Information

Gene Symbol (Gene ID) Pcsk5 (ENSMUSG00000024713)
Cross Reference
CCDS CCDS50401.1
EMBL AC125203, AC126940, AC133509, ...show all
GO GO:0001822, GO:0001822, GO:0002001, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005576, ...show all
MEROPS S08.076
MGI_trans_name Pcsk5-201
protein_id AAA74636.1, BAA02143.1, BAA04507.1
Reactome R-MMU-162582, R-MMU-166520, R-MMU-167060
RefSeq_mRNA NM_001190483.1
RefSeq_mRNA_predicted XM_011247162.1
RefSeq_peptide NP_001177412
RefSeq_peptide_predicted XP_011245464.1
UCSC uc008gxp.2
UniParc UPI0000022409
Uniprot/SWISSPROT Q04592
Definition protein_id:ENSMUSP00000025618
translation:
MDWDWGNRCSRPGRRDLLCVLALLAGCLLPVCRTRVYTNHWAVKIAGGFAEADRIASKYG
FINVGQIGALKDYYHFYHSRTIKRSVLSSRGTHSFISMEPKVEWIQQQVVKKRTKRDYDL
SHAQSTYFNDPKWPSMWYMHCSDNTHPCQSDMNIEGAWKRGYTGKNIVVTILDDGIERTH
PDLMQNYDALASCDVNGNDLDPMPRYDASNENKHGTRCAGEVAATANNSHCTVGIAFNAK
IGGVRMLDGDVTDMVEAKSVSYNPQHVHIYSASWGPDDDGKTVDGPAPLTRQAFENGVRM
GRRGLGSVFVWASGNGGRSKDHCSCDGYTNSIYTISISSTAESGKKPWYLEECSSTLATT
YSSGESYDKKIITTDLRQRCTDNHTGTSASAPMAAGIIALALEANPFLTWRDVQHVIVRT
SRAGHLNANDWKTNAAGFKVSHLYGFGLMDAEAMVMEAEKWTTVPQQHVCVESTDRQIKT
IRPNSAVRSIYKASGCSDNPNHHVNYLEHVVVRITITHPRRGDLAIYLTSPSGTRSQLLA
NRLFDHSMEGFKNWEFMTIHCWGERAAGDWVLEVYDTPSQLRNFKTPGKLKEWSLVLYGT
SVQPYSPTNEFPKVERFRYSRVEDPTDDYGAEDYAGPCDPECSEVGCDGPGPDHCSDCLH
YYYKLKNNTRICVSSCPPGHYHADKKRCRKCAPNCESCFGSHGNQCLSCKYGYFLNEETS
SCVTQCPDGSYEDIKKNVCGKCSENCKACIGFHNCTECKGGLSLQGSRCSVTCEDGQFFN
GHDCQPCHRFCATCSGAGADGCINCTEGYVMEEGRCVQSCSVSYYLDHSSEGGYKSCKRC
DNSCLTCNGPGFKNCSSCPSGYLLDLGTCQMGAICKDGEYIDDQGHCQTCEASCAKCWGP
TQEDCISCPVTRVLDDGRCVMNCPSWKFEFKKQCHPCHYTCQGCQGSGPSNCTSCRADKH
GQERFLYHGECLENCPVGHYPAKGHACLPCPDNCELCYNPHVCSRCMSGYVIIPPNHTCQ
KLECRQGEFQDSEYEECMPCEEGCLGCTEDDPGACTSCATGYYMFERHCYKACPEKTFGV
KWECRACGTNCGSCDQHECYWCEEGFFLSGGSCVQDCGPGFHGDQELGECKPCHRACENC
TGSGYNQCSSCQEGLQLWHGTCLWSTWPQVEGKDWNEAVPTEKPSLVRSLLQDRRKWKVQ
IKRDATSQNQPCHSSCKTCNGSLCASCPTGMYLWLQACVPSCPQGTWPSVTSGSCEKCSE
DCVSCSGADLCQQCLSQPDNTLLLHEGRCYHSCPEGFYAKDGVCEHCSSPCKTCEGNATS
CNSCEGDFVLDHGVCWKTCPEKHVAVEGVCKHCPERCQDCIHEKTCKECMPDFFLYNDMC
HRSCPKSFYPDMRQCVPCHKNCLECNGPKEDDCKVCADTSKALHNGLCLDECPEGTYKEE
ENDECRDCPESCLICSSAWTCLACREGFTVVHDVCTAPKECAAVEYWDEGSHRCQPCHKK
CSRCSGPSEDQCYTCPRETFLLNTTCVKECPEGYHTDKDSQQCVLCHSSCRTCEGPHSMQ
CLSCRPGWFQLGKECLLQCRDGYYGESTSGRCEKCDKSCKSCRGPRPTDCQSCDTFFFLL
RSKGQCHRACPEHYYADQHAQTCERCHPTCDKCSGKEAWSCLSCVWSYHLLKGICIPECI
VGEYREGKGENFNCKKCHESCMECKGPGSKNCTGCSAGLLLDMDDNRCLHCCNASHSRRS
QDCCDCQSSTDECILPAREAEFYEHTKTALLVTSGAMLLLLLGAAAVVWRKSRSRPVAKG
RYEKLAEPTVSYSSYRSSYLDEDQVIEYRDRDYDEDDEDDIVYMGQDGTVYRKFKYGLLD
ETEDDELEYDDESYSYQ

Chromosome 19
Length
Position(start - end)
403,758
17,433,393 - 17,837,152
Orient to Chromosome minus
Link Location : (19:17433393-17837152)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Pcsk5 (ENSMUSG00000024713)
Transcript ID ENSMUST00000025618
Reports
substitution
cSNPs28
Insertion258
Deletion327
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num19
non-synonymous num9
synonymous substitutions 17433644 (p.Arg1795Arg), 17433741 (p.Phe1762Phe), 17447626 (p.Gly1604Gly), 17447667 (p.Arg1591Arg), 17456791 (p.Glu1404Glu), 17461769 (p.Phe1328Phe), 17473060 (p.Thr1141Thr), 17525271 (p.Ala892Ala), 17572566 (p.Arg687Arg), 17586143 (p.Leu543Leu), 17595675 (p.Thr474Thr), 17595774 (p.Ser441Ser), 17654727 (p.Ala358Ala), 17654778 (p.Ala341Ala), 17675430 (p.Gly297Gly), 17678500 (p.Thr232Thr), 17714842 (p.Lys159Lys), 17714893 (p.Ser142Ser), 17837060 (p.Val31Val),
non-synonymous substitutions 17433670 (p.Ala1786Val), 17436491 (p.Arg1738His), 17436579 (p.Ser1709Gly), 17447621 (p.Arg1606Gln), 17447666 (p.Arg1591Lys), 17454766 (p.Gln1495Leu), 17473067 (p.Asn1139Thr), 17511499 (p.Ala986Thr), 17572517 (p.Asn704Asp),
B6 transcript
(ENSMUST00000025618)
MDWDWGNRCSRPGRRDLLCVLALLAGCLLPVCRTRVYTNHWAVKIAGGFAEADRIASKYG
FINVGQIGALKDYYHFYHSRTIKRSVLSSRGTHSFISMEPKVEWIQQQVVKKRTKRDYDL
SHAQSTYFNDPKWPSMWYMHCSDNTHPCQSDMNIEGAWKRGYTGKNIVVTILDDGIERTH
PDLMQNYDALASCDVNGNDLDPMPRYDASNENKHGTRCAGEVAATANNSHCTVGIAFNAK
IGGVRMLDGDVTDMVEAKSVSYNPQHVHIYSASWGPDDDGKTVDGPAPLTRQAFENGVRM
GRRGLGSVFVWASGNGGRSKDHCSCDGYTNSIYTISISSTAESGKKPWYLEECSSTLATT
YSSGESYDKKIITTDLRQRCTDNHTGTSASAPMAAGIIALALEANPFLTWRDVQHVIVRT
SRAGHLNANDWKTNAAGFKVSHLYGFGLMDAEAMVMEAEKWTTVPQQHVCVESTDRQIKT
IRPNSAVRSIYKASGCSDNPNHHVNYLEHVVVRITITHPRRGDLAIYLTSPSGTRSQLLA
NRLFDHSMEGFKNWEFMTIHCWGERAAGDWVLEVYDTPSQLRNFKTPGKLKEWSLVLYGT
SVQPYSPTNEFPKVERFRYSRVEDPTDDYGAEDYAGPCDPECSEVGCDGPGPDHCSDCLH
YYYKLKNNTRICVSSCPPGHYHADKKRCRKCAPNCESCFGSHGNQCLSCKYGYFLNEETS
SCVTQCPDGSYEDIKKNVCGKCSENCKACIGFHNCTECKGGLSLQGSRCSVTCEDGQFFN
GHDCQPCHRFCATCSGAGADGCINCTEGYVMEEGRCVQSCSVSYYLDHSSEGGYKSCKRC
DNSCLTCNGPGFKNCSSCPSGYLLDLGTCQMGAICKDGEYIDDQGHCQTCEASCAKCWGP
TQEDCISCPVTRVLDDGRCVMNCPSWKFEFKKQCHPCHYTCQGCQGSGPSNCTSCRADKH
GQERFLYHGECLENCPVGHYPAKGHACLPCPDNCELCYNPHVCSRCMSGYVIIPPNHTCQ
KLECRQGEFQDSEYEECMPCEEGCLGCTEDDPGACTSCATGYYMFERHCYKACPEKTFGV
KWECRACGTNCGSCDQHECYWCEEGFFLSGGSCVQDCGPGFHGDQELGECKPCHRACENC
TGSGYNQCSSCQEGLQLWHGTCLWSTWPQVEGKDWNEAVPTEKPSLVRSLLQDRRKWKVQ
IKRDATSQNQPCHSSCKTCNGSLCASCPTGMYLWLQACVPSCPQGTWPSVTSGSCEKCSE
DCVSCSGADLCQQCLSQPDNTLLLHEGRCYHSCPEGFYAKDGVCEHCSSPCKTCEGNATS
CNSCEGDFVLDHGVCWKTCPEKHVAVEGVCKHCPERCQDCIHEKTCKECMPDFFLYNDMC
HRSCPKSFYPDMRQCVPCHKNCLECNGPKEDDCKVCADTSKALHNGLCLDECPEGTYKEE
ENDECRDCPESCLICSSAWTCLACREGFTVVHDVCTAPKECAAVEYWDEGSHRCQPCHKK
CSRCSGPSEDQCYTCPRETFLLNTTCVKECPEGYHTDKDSQQCVLCHSSCRTCEGPHSMQ
CLSCRPGWFQLGKECLLQCRDGYYGESTSGRCEKCDKSCKSCRGPRPTDCQSCDTFFFLL
RSKGQCHRACPEHYYADQHAQTCERCHPTCDKCSGKEAWSCLSCVWSYHLLKGICIPECI
VGEYREGKGENFNCKKCHESCMECKGPGSKNCTGCSAGLLLDMDDNRCLHCCNASHSRRS
QDCCDCQSSTDECILPAREAEFYEHTKTALLVTSGAMLLLLLGAAAVVWRKSRSRPVAKG
RYEKLAEPTVSYSSYRSSYLDEDQVIEYRDRDYDEDDEDDIVYMGQDGTVYRKFKYGLLD
ETEDDELEYDDESYSYQ*
MSMv4 transcript
MDWDWGNRCSRPGRRDLLCVLALLAGCLLPVCRTRVYTNHWAVKIAGGFAEADRIASKYG
FINVGQIGALKDYYHFYHSRTIKRSVLSSRGTHSFISMEPKVEWIQQQVVKKRTKRDYDL
SHAQSTYFNDPKWPSMWYMHCSDNTHPCQSDMNIEGAWKRGYTGKNIVVTILDDGIERTH
PDLMQNYDALASCDVNGNDLDPMPRYDASNENKHGTRCAGEVAATANNSHCTVGIAFNAK
IGGVRMLDGDVTDMVEAKSVSYNPQHVHIYSASWGPDDDGKTVDGPAPLTRQAFENGVRM
GRRGLGSVFVWASGNGGRSKDHCSCDGYTNSIYTISISSTAESGKKPWYLEECSSTLATT
YSSGESYDKKIITTDLRQRCTDNHTGTSASAPMAAGIIALALEANPFLTWRDVQHVIVRT
SRAGHLNANDWKTNAAGFKVSHLYGFGLMDAEAMVMEAEKWTTVPQQHVCVESTDRQIKT
IRPNSAVRSIYKASGCSDNPNHHVNYLEHVVVRITITHPRRGDLAIYLTSPSGTRSQLLA
NRLFDHSMEGFKNWEFMTIHCWGERAAGDWVLEVYDTPSQLRNFKTPGKLKEWSLVLYGT
SVQPYSPTNEFPKVERFRYSRVEDPTDDYGAEDYAGPCDPECSEVGCDGPGPDHCSDCLH
YYYKLKNNTRICVSSCPPGHYHADKKRCRKCAPNCESCFGSHGDQCLSCKYGYFLNEETS
SCVTQCPDGSYEDIKKNVCGKCSENCKACIGFHNCTECKGGLSLQGSRCSVTCEDGQFFN
GHDCQPCHRFCATCSGAGADGCINCTEGYVMEEGRCVQSCSVSYYLDHSSEGGYKSCKRC
DNSCLTCNGPGFKNCSSCPSGYLLDLGTCQMGAICKDGEYIDDQGHCQTCEASCAKCWGP
TQEDCISCPVTRVLDDGRCVMNCPSWKFEFKKQCHPCHYTCQGCQGSGPSNCTSCRADKH
GQERFLYHGECLENCPVGHYPAKGHTCLPCPDNCELCYNPHVCSRCMSGYVIIPPNHTCQ
KLECRQGEFQDSEYEECMPCEEGCLGCTEDDPGACTSCATGYYMFERHCYKACPEKTFGV
KWECRACGTNCGSCDQHECYWCEEGFFLSGGSCVQDCGPGFHGDQELGECKPCHRACETC
TGSGYNQCSSCQEGLQLWHGTCLWSTWPQVEGKDWNEAVPTEKPSLVRSLLQDRRKWKVQ
IKRDATSQNQPCHSSCKTCNGSLCASCPTGMYLWLQACVPSCPQGTWPSVTSGSCEKCSE
DCVSCSGADLCQQCLSQPDNTLLLHEGRCYHSCPEGFYAKDGVCEHCSSPCKTCEGNATS
CNSCEGDFVLDHGVCWKTCPEKHVAVEGVCKHCPERCQDCIHEKTCKECMPDFFLYNDMC
HRSCPKSFYPDMRQCVPCHKNCLECNGPKEDDCKVCADTSKALHNGLCLDECPEGTYKEE
ENDECRDCPESCLICSSAWTCLACREGFTVVHDVCTAPKECAAVEYWDEGSHRCLPCHKK
CSRCSGPSEDQCYTCPRETFLLNTTCVKECPEGYHTDKDSQQCVLCHSSCRTCEGPHSMQ
CLSCRPGWFQLGKECLLQCRDGYYGESTSGQCEKCDKSCKSCRGPQPTDCQSCDTFFFLL
RSKGQCHRACPEHYYADQHAQTCERCHPTCDKCSGKEAWSCLSCVWSYHLLKGICIPECI
VGEYREGKGENFNCKKCHESCMECKGPGGKNCTGCSAGLLLDMDDNRCLHCCNASHSHRS
QDCCDCQSSTDECILPAREAEFYEHTKTALLVTSGAMLLLLLGAAVVVWRKSRSRPVAKG
RYEKLAEPTVSYSSYRSSYLDEDQVIEYRDRDYDEDDEDDIVYMGQDGTVYRKFKYGLLD
ETEDDELEYDDESYSYQ*
homology99.52 (1878 / 1878)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Pcsk5 (ENSMUSG00000024713)
Transcript ID ENSMUST00000025618
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TCTTTTAAGGTTAGGCAAACCATTTCATAAAGACCAATTTTTCTTTTTAC
AAGAAACTACTCTTTGGCCCCTCACCTGCAAAAGACAAGGTGGTTAGAGAAGTCTGAAGA
AGGCCAGACACCATTCCCTGTTGTGTCTGAAGTCATGGTACTTTAATGCAGACTTGGTGG
TATTTCATCTGACTTCCTCTGTGGTCCTTTTTATATTACTCTCCCCCTCTGCTCTGGTGA
CATACTTGGAAAGTTGGAAAACTCTCCTTGCTGAGGTAAATGAAGCCCTTGGAGATAAGG
ACACAGAAACAAATGACCGAATGGCCGCTCCCTTGGAACCCACACTTGTCCCTTCTCTAG
TATTGTAGATATTCATAGAAATATCTTTCCATGCTCTAAGCAGGGATTTCACCCTCCTGT
GATGTTGCTGCTAAGTATCAGAATGGCTGATCTCCCAAGTCAGCAGGCGACAGACTTTTG
GCTTTGGCTTTTGTAAGAGTGGATGATACTTAACTGTCCTGTGTGACAGCTTCTCCGGGG
AGCAGAATGCGCAAAATAAACAGTTACTGAAAAGCATAAAGATTTAGTGAAGTGAAAATC
TCGATATTTGTTTTGAAATTGAGACACGAGTGACCTTAAAATGCTTAGTCCAGGGCGGTT
AGCGCCAGGATGAATGAATCTTTGCCCATACTTCCCTCTCATTATCCTGTAAATCTTAGA
CTTTCCAGAGTAACGGGAAATTAATTCAAATGCAGCCCGGCGGAATAAAAGGGATAGAAA
TCAAGACTCCGGAGGCACTCTCCCCTCAGCCCTTTGGGGAGAGGACTTCACTGGCCCGAC
CCTGGAGTTTACAGCAGGGAGAACAGGGAGGCGCTAGGACCTGGGTGGCTCCTGGCTGAG
GCCCCGCTCGTGAGGGCGGAGGAGTAGAGGAGGAGGGAGATGTGGGAAAGGAGGGGTGCT
CCGGGGGGCGGGGGAGTCATTTATGTGGAGCGGGCGCCGCTGCCGTCGCC
1 EXON 1 17,836,955 17,837,632 - 0 678
ACTCACAGTCCCGGCGCGCTGCTCGGAGCCGGAGGGAGCGCAGCGAGAGGGCGAGCGAGC
GAGCGAGCGCTTGGAGCCGGGTTCAGCAGAGGGGGCGCCCGGCCGCTGCCTGCGCTCCGG
CCGGTCGTCTCTACGGAGCTCCAGGGCCGGAGAGGAGCAAGAGGCAAACGAAGAGTCCAA
GAGCAAAGCCGGGAGAGCCCGCGGTGGAGGCTCCAGTCCCACTCCGCCGCCTCCCGTGCA
AGCCGGGGAGCGATCGCTCAACGCCCCGCCGGCCCAGAGCCCGTCACCCCGTCCCCTCTG
CCCCAGGCATGGTCTAAGAGCCTGAGAGTGGCTAGCTGTTCTGCTCTGCTCCCGGGCTCT
CAGCCTCCTACCGACCGCTCCCGGGTGCGCGCCCCGCCGGCCCAGGCCGGAGAAGTTAGT
TGTGCGCGCCGCTTAGCGCGCGAGCCAGCGGGCGGACGAAGGCGGCGAAGCGTCGGGACC
ATGGACTGGGACTGGGGGAACCGCTGCAGCCGCCCGGGACGGCGGGACCTGCTGTGCGTG
CTGGCACTGCTCGCCGGCTGTCTGCTCCCGGTGTGCCGGACGCGCGTCTACACCAACCAC
TGGGCAGTGAAGATCGCCGGCGGCTTCGCGGAGGCAGATCGCATAGCCAGCAAGTACGGA
TTCATCAACGTAGGACAG
INTRON 1 - 2 17,793,734 17,836,954 43,221
GTAACCAACCCCCGGTGACACAGGC..........GTCTTCTTCCCACCTTGTCCCGCAG
2 EXON 2 17,793,629 17,793,733 0 0 105
ATCGGTGCACTGAAGGACTACTATCACTTCTACCATAGTAGGACCATTAAAAGGTCTGTT
CTCTCGAGCAGAGGAACCCACAGTTTCATTTCAATGGAACCAAAG
INTRON 2 - 3 17,752,177 17,793,628 41,452
GTAAGAACACCCAGTTGGATGGGGA..........CACCAGATGTCTCTCTTCTTGGAAG
3 EXON 3 17,752,063 17,752,176 0 0 114
GTGGAGTGGATCCAACAGCAAGTGGTGAAAAAAAGAACCAAGAGGGATTATGACCTCAGC
CATGCCCAGTCAACCTACTTCAATGATCCCAAGTGGCCAAGTATGTGGTACATG
INTRON 3 - 4 17,714,902 17,752,062 37,161
GTAAGTGCTGAGGAAGGCTGGCTAT..........AATCTATGGCCCTCTCGTTCTTTAG
4 EXON 4 17,714,758 17,714,901 0 0 144
CACTGCAGCGACAACACCCATCCTTGCCAGTCAGACATGAATATCGAAGGAGCCTGGAAA
AGAGGCTACACGGGGAAGAATATCGTGGTGACTATCCTGGATGACGGCATCGAGAGAACC
CACCCAGATCTGATGCAAAACTAC
INTRON 4 - 5 17,711,992 17,714,757 2,766
GTGAGTGTTTGCTGTGGACACAAGT..........TCCCTTCTTCTCTTCACGGTCATAG
5 EXON 5 17,711,915 17,711,991 0 2 77
GATGCTCTGGCAAGTTGCGATGTGAATGGGAATGACTTGGACCCGATGCCTCGTTATGAT
GCAAGCAATGAGAACAA
INTRON 5 - 6 17,678,558 17,711,914 33,357
GTAAGATTCAGAGGCGGGCTGGCAT..........AGAAACTGTGTCTGTTCTGCTGCAG
6 EXON 6 17,678,469 17,678,557 2 1 89
GCATGGGACCCGCTGTGCCGGAGAAGTGGCAGCCACTGCAAACAACTCTCACTGCACCGT
CGGGATCGCTTTCAACGCCAAGATTGGAG
INTRON 6 - 7 17,675,594 17,678,468 2,875
GTATGGGACACTTCCAGGGATATAC..........AAGCTTGCTCCTTTCTGCTTTGAAG
7 EXON 7 17,675,421 17,675,593 1 0 173
GTGTGAGAATGCTGGATGGTGATGTCACTGACATGGTGGAGGCAAAGTCTGTCAGCTACA
ACCCACAGCATGTGCACATCTACAGTGCCAGCTGGGGACCAGATGACGATGGCAAGACTG
TGGATGGGCCAGCTCCCCTCACCCGGCAAGCCTTTGAGAACGGTGTGAGAATG
INTRON 7 - 8 17,654,901 17,675,420 20,520
GTAGGTGTTCAAAGCATCTGGGGTG..........TCTAACATTCTCTGTCTATCAACAG
8 EXON 8 17,654,688 17,654,900 0 0 213
GGGCGGAGAGGCCTTGGATCTGTGTTTGTGTGGGCATCTGGCAATGGTGGACGGAGCAAG
GATCACTGTTCTTGTGATGGCTATACCAACAGCATCTATACCATCTCCATCAGCAGTACG
GCTGAAAGTGGAAAGAAACCTTGGTACTTGGAAGAGTGTTCATCTACACTGGCCACAACC
TACAGCAGTGGAGAATCCTATGATAAGAAAATA
INTRON 8 - 9 17,642,594 17,654,687 12,094
GTATGTAACCTTTGCATGCTAATTA..........TTGTGTTTTCATTTTTGTCTTTCAG
9 EXON 9 17,642,493 17,642,593 0 2 101
ATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCC
CCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCAA
INTRON 9 - 10 17,617,755 17,642,492 24,738
GTAAGCCTTGATCTCTCTTTCCTAC..........TGATTCTTACCTTGTCTTTCCCCAG
10 EXON 10 17,617,651 17,617,754 2 1 104
TCCGTTTCTGACCTGGAGAGACGTGCAGCATGTTATTGTCAGGACTTCCCGTGCGGGACA
TTTGAACGCTAATGACTGGAAAACCAATGCTGCTGGTTTTAAGG
INTRON 10 - 11 17,595,779 17,617,650 21,872
GTGAGAACTTCTTTCCTATTCTGTC..........CTGACCTACCTCTTGCCTTCCACAG
11 EXON 11 17,595,661 17,595,778 1 2 118
TGAGTCATCTCTATGGATTTGGACTGATGGATGCCGAAGCCATGGTGATGGAAGCAGAGA
AGTGGACAACTGTTCCTCAGCAGCACGTGTGTGTGGAAAGCACGGACCGACAAATCAA
INTRON 11 - 12 17,594,729 17,595,660 932
GTAATGCTTGCTGCCTTAGCTACAA..........AACTCCATACTCTCTCTCCTGCCAG
12 EXON 12 17,594,540 17,594,728 2 2 189
GACCATTCGACCAAACAGTGCAGTGCGCTCCATCTACAAAGCCTCAGGCTGCTCGGATAA
TCCCAACCATCACGTCAATTACCTGGAGCATGTAGTTGTGCGTATTACCATCACACACCC
ACGGAGGGGAGACCTGGCCATCTATCTGACATCACCCTCAGGAACCAGATCCCAGCTCTT
GGCCAACAG
INTRON 12 - 13 17,586,147 17,594,539 8,393
GTACAGTGAGGACCACTCCCGACCA..........CAAGAAGAATCTTATGGTTTTTCAG
13 EXON 13 17,586,010 17,586,146 2 1 137
GCTATTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTG
GGGAGAACGGGCTGCTGGGGACTGGGTCCTCGAAGTTTATGATACGCCATCTCAGCTGAG
GAACTTCAAGACTCCAG
INTRON 13 - 14 17,581,280 17,586,009 4,730
GTAAGAAATCAGTTCAAATTAACCC..........TCACTCTCGGTTACTGTTTCTCAAG
14 EXON 14 17,581,136 17,581,279 1 1 144
GTAAATTGAAAGAATGGTCCTTAGTCCTCTATGGCACGTCCGTACAGCCATACTCCCCAA
CCAACGAGTTTCCCAAAGTGGAACGCTTCCGCTACAGCCGAGTGGAAGACCCCACAGATG
ACTACGGTGCTGAAGATTATGCAG
INTRON 14 - 15 17,575,909 17,581,135 5,227
GTGAGCTGGGCATAACTTACAAAAG..........CCAATTTCAAATCGCTTCTTGAAAG
15 EXON 15 17,575,806 17,575,908 1 2 103
GTCCCTGTGACCCTGAATGCAGTGAGGTTGGATGTGACGGGCCAGGACCAGATCACTGCA
GTGACTGCTTACACTACTACTACAAGCTGAAAAATAACACCAG
INTRON 15 - 16 17,572,618 17,575,805 3,188
GTAAGAGACAAGCCATGCTCTCACG..........TTTCCCTTCTAATCCCACGATGCAG
16 EXON 16 17,572,424 17,572,617 2 1 194
AATCTGTGTCTCCAGCTGCCCTCCTGGCCACTACCATGCTGACAAGAAGAGGTGCCGGAA
GTGTGCCCCAAACTGCGAGTCCTGCTTTGGCAGCCATGGTGATCAGTGCCTCTCCTGTAA
ATATGGCTACTTCCTGAATGAAGAAACTAGCAGCTGTGTTACTCAGTGCCCTGATGGATC
ATACGAGGATATCA
INTRON 16 - 17 17,568,354 17,572,423 4,070
GTGAGTTGTTTTGAAATGTTTTGGG..........TGTGCTTCTTTTCTTTCCTTAACAG
17 EXON 17 17,568,269 17,568,353 1 2 85
AGAAAAATGTCTGTGGGAAATGCAGTGAGAACTGCAAGGCATGCATTGGATTTCACAACT
GCACAGAGTGCAAGGGCGGGTTAAG
INTRON 17 - 18 17,565,366 17,568,268 2,903
GTAAGAGAGTGAGATCCCCCAAGTG..........TATAGCTTGTCCATGTTTCTCCCAG
18 EXON 18 17,565,268 17,565,365 2 1 98
TCTTCAGGGATCCCGCTGTTCGGTCACCTGCGAGGATGGACAGTTCTTCAATGGTCACGA
CTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTG
INTRON 18 - 19 17,564,840 17,565,267 428
GTACCCTTCTCCCACTCCTCCCCCT..........TTCTTGCATGTGCTTTGCACCGAAG
19 EXON 19 17,564,710 17,564,839 1 2 130
GGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGT
GTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAAT
CCTGCAAGAG
INTRON 19 - 20 17,563,898 17,564,709 812
GTAAGTTCATCTACTCTGACCCTAG..........CAATAGTTATGTGTTTTGCCTATAG
20 EXON 20 17,563,782 17,563,897 2 1 116
ATGTGATAACAGCTGTTTGACATGCAATGGGCCAGGATTCAAGAACTGTTCCAGCTGCCC
CAGTGGATATCTTTTAGACTTAGGAACGTGTCAGATGGGAGCCATCTGCAAGGATG
INTRON 20 - 21 17,525,315 17,563,781 38,467
GTGAGTACAGCTACGTGATCCGCTC..........GTAAACAGCTACATTTGTTCCACAG
21 EXON 21 17,525,212 17,525,314 1 2 103
GAGAATACATTGATGACCAAGGCCACTGCCAAACCTGTGAAGCATCATGTGCCAAGTGCT
GGGGACCAACTCAGGAAGACTGTATCAGCTGCCCCGTAACAAG
INTRON 21 - 22 17,515,273 17,525,211 9,939
GTGAGTGACTTTTTAGTGATTCCTA..........TTCTAATACCCTGCTTGTCCTCCAG
22 EXON 22 17,515,136 17,515,272 2 1 137
GGTCTTGGATGATGGTCGCTGTGTTATGAACTGTCCTTCCTGGAAGTTCGAATTTAAGAA
GCAATGCCATCCCTGCCACTACACTTGTCAAGGATGCCAAGGTAGTGGCCCTTCCAACTG
CACCTCCTGTAGAGCAG
INTRON 22 - 23 17,511,583 17,515,135 3,553
GTGAGGACATTTGCTGCCGGCTCCT..........TTCTCATGCCCCTCTAACTGGTCAG
23 EXON 23 17,511,376 17,511,582 1 1 207
ACAAGCATGGTCAGGAGCGCTTCCTGTACCACGGGGAATGTCTGGAGAACTGCCCTGTGG
GCCATTATCCTGCCAAGGGACACACCTGCCTACCCTGCCCAGACAACTGTGAGCTTTGCT
ACAACCCACACGTCTGCAGTCGATGCATGAGTGGCTATGTCATCATTCCCCCCAACCACA
CCTGCCAGAAGCTGGAGTGCAGACAAG
INTRON 23 - 24 17,510,237 17,511,375 1,139
GTGAGACTTCTCTGGGGCTCTGCTC..........TTTTCCATGTCCTCTCACTGTACAG
24 EXON 24 17,510,168 17,510,236 1 1 69
GTGAATTCCAGGATTCTGAGTATGAAGAATGCATGCCCTGTGAGGAAGGATGTCTGGGAT
GCACTGAGG
INTRON 24 - 25 17,477,917 17,510,167 32,251
GTATGTCATCTTCCTTTGTTACTTA..........TTTCATTATTGTCATTTTTTTCCAG
25 EXON 25 17,477,874 17,477,916 1 2 43
ATGATCCAGGAGCCTGTACCTCGTGTGCTACAGGATATTACAT
INTRON 25 - 26 17,474,949 17,477,873 2,925
GTAAGTCTGGCCCTCTTTGTTCATG..........GGAAGCACGGCATCCTCTCCCCTAG
26 EXON 26 17,474,812 17,474,948 2 1 137
GTTTGAGCGGCATTGCTATAAAGCCTGTCCTGAGAAGACCTTCGGTGTGAAATGGGAATG
CAGGGCCTGTGGTACTAACTGTGGCAGCTGCGACCAACATGAGTGCTACTGGTGTGAGGA
GGGCTTCTTTCTCTCCG
INTRON 26 - 27 17,473,155 17,474,811 1,657
GTAAGCTGGAAAATGGTGACCCACT..........TACCTTTCCCCTTGTTCTTCCAAAG
27 EXON 27 17,472,954 17,473,154 1 1 201
GTGGCAGCTGTGTGCAGGATTGTGGCCCTGGCTTCCATGGAGACCAAGAGTTGGGAGAAT
GCAAGCCCTGCCACCGAGCCTGTGAGACTTGCACCGGCTCGGGCTACAACCAATGCAGCA
GCTGTCAAGAAGGGTTGCAGCTATGGCATGGGACGTGTCTCTGGTCCACCTGGCCTCAGG
TGGAAGGCAAGGACTGGAATG
INTRON 27 - 28 17,469,099 17,472,953 3,855
GTACGTATCTGCTAGAGGGAGGTCC..........ATTTTTTTAATAATAAAAAAAAAAG
28 EXON 28 17,469,018 17,469,098 1 1 81
AAGCCGTGCCCACTGAAAAGCCATCTTTGGTGAGGAGTCTGCTGCAGGATCGACGAAAGT
GGAAAGTTCAAATCAAAAGAG
INTRON 28 - 29 17,466,184 17,469,017 2,834
GTAACAGGGAAATAGGGAGGAGCCG..........TCTGATGTGTTTCTTGCCCATACAG
29 EXON 29 17,466,106 17,466,183 1 1 78
ATGCAACGAGCCAGAATCAACCTTGTCACTCTTCTTGTAAAACCTGCAATGGATCTCTCT
GCGCTTCATGTCCCACAG
INTRON 29 - 30 17,463,537 17,466,105 2,569
GTCAGTGTGGAAGGGGAGACAGCGG..........TCTGCCCTCATGCCCTGGCTTCCAG
30 EXON 30 17,463,341 17,463,536 1 2 196
GTATGTACCTGTGGCTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAG
TCACCAGTGGCAGCTGTGAAAAGTGTTCCGAGGACTGTGTCTCCTGCTCCGGTGCCGACC
TTTGCCAACAGTGCCTGAGCCAGCCGGACAACACTCTGCTTCTCCATGAGGGCAGGTGCT
ACCACAGTTGCCCAGA
INTRON 30 - 31 17,461,869 17,463,340 1,472
GTAAGTCTCCACCTCCCGCTGACGT..........ATTGCAATTTCCCTTCTTTCCATAG
31 EXON 31 17,461,651 17,461,868 2 1 218
GGGCTTTTATGCAAAAGATGGTGTTTGTGAACACTGTAGTTCCCCTTGCAAAACATGCGA
AGGAAATGCCACCAGCTGTAACTCTTGTGAAGGAGACTTTGTCCTAGACCATGGGGTGTG
CTGGAAAACTTGCCCTGAAAAGCACGTGGCCGTGGAAGGAGTCTGCAAGCACTGTCCAGA
GAGGTGCCAGGACTGCATCCACGAGAAAACTTGCAAAG
INTRON 31 - 32 17,456,901 17,461,650 4,750
GTACTTGGAAGCATCCCGATTGAAA..........ACCTGCTACTTCCTCCTTTCCTCAG
32 EXON 32 17,456,664 17,456,900 1 1 237
AGTGCATGCCTGACTTCTTTCTATACAATGACATGTGCCATCGTTCCTGTCCCAAGAGCT
TCTACCCTGACATGCGCCAGTGTGTCCCCTGCCACAAAAACTGTCTGGAATGCAATGGCC
CCAAGGAAGATGACTGTAAGGTCTGTGCTGATACTTCTAAGGCTCTCCACAATGGATTGT
GCTTGGATGAGTGCCCTGAGGGAACCTACAAAGAAGAAGAGAATGATGAATGCAGAG
INTRON 32 - 33 17,454,911 17,456,663 1,753
GTAAGACTTTCTGGGCTACATGACT..........ACTTGTTTGCCTGCTGTGCCTGCAG
33 EXON 33 17,454,683 17,454,910 1 1 228
ATTGCCCCGAGTCCTGCCTGATCTGCTCATCAGCTTGGACCTGCCTGGCCTGTCGGGAAG
GCTTCACAGTAGTGCATGATGTCTGCACGGCACCCAAGGAGTGTGCAGCCGTCGAGTACT
GGGATGAGGGCTCCCACAGGTGCCTGCCGTGTCACAAGAAATGCTCCCGCTGCTCAGGGC
CTTCTGAGGACCAGTGCTATACCTGTCCCAGAGAGACTTTTCTTCTCA
INTRON 33 - 34 17,452,046 17,454,682 2,637
GTAAGTTGTAATGCTTATTATGCCC..........AGACTCATCTTTCCTTCTTCCACAG
34 EXON 34 17,451,868 17,452,045 1 2 178
ATACAACCTGTGTGAAAGAGTGCCCAGAGGGCTACCACACTGACAAGGACAGCCAGCAGT
GTGTGCTCTGCCACAGCTCTTGCAGGACCTGCGAAGGACCACACAGCATGCAGTGCCTCT
CCTGCCGACCTGGCTGGTTTCAACTGGGCAAGGAGTGCTTGCTGCAATGCAGGGATGG
INTRON 34 - 35 17,447,693 17,451,867 4,175
GTAAGGAGTTCAGCACATTCTCCTT..........GCCTGTGCTTCCCTCTTGGTTACAG
35 EXON 35 17,447,475 17,447,692 2 1 218
ATATTATGGAGAAAGCACCAGCGGTCAGTGTGAGAAGTGTGACAAGAGCTGCAAGTCATG
CCGAGGCCCACAGCCCACAGACTGCCAGTCTTGCGATACATTTTTCTTTCTCCTACGCTC
CAAGGGACAGTGCCACCGCGCTTGCCCTGAGCACTACTATGCAGACCAACACGCCCAGAC
CTGTGAGAGGTGCCACCCCACTTGTGACAAGTGCAGCG
INTRON 35 - 36 17,439,120 17,447,474 8,355
GTAAGAGTATGCCTATGTTTTGCAT..........TTTTCTCTCTCTCTCTCTCTTTCAG
36 EXON 36 17,439,019 17,439,119 1 0 101
GAAAGGAGGCGTGGAGTTGCTTGTCCTGTGTGTGGAGCTACCACCTTCTGAAAGGAATCT
GCATCCCAGAATGTATCGTAGGGGAATACAGAGAGGGAAAG
INTRON 36 - 37 17,436,640 17,439,018 2,379
GTACCGAGACCTGGGCTTGGTGTAT..........ACCACTTCTTTCCTGTTCTTAACAG
37 EXON 37 17,436,453 17,436,639 0 1 187
GGAGAAAACTTTAACTGTAAAAAATGCCACGAGAGCTGCATGGAATGCAAGGGTCCAGGC
GGCAAGAACTGCACCGGGTGCTCAGCTGGCCTGCTGCTGGACATGGACGACAACCGCTGC
CTCCATTGCTGCAATGCCTCCCACTCCCACAGATCCCAGGACTGCTGCGACTGCCAGAGT
TCCACAG
INTRON 37 - 38 17,433,776 17,436,452 2,677
GTAAGGGCAGGTGGGACGGCCTGCA..........TGCTCCTGGGACGGCCTTCCATCAG
38 EXON 38 17,432,832 17,433,775 1 - 944
ATGAGTGCATCCTTCCAGCCAGGGAGGCTGAGTTCTACGAGCACACCAAGACTGCTCTGC
TAGTGACCTCTGGCGCCATGCTGTTGCTGCTGCTGGGGGCTGCTGTGGTCGTGTGGCGGA
AGTCTCGAAGCCGACCTGTGGCAAAGGGGCGGTACGAAAAGCTGGCAGAACCTACCGTGT
CATACTCCTCCTACAGGAGCAGCTATCTTGACGAGGACCAGGTGATTGAGTACAGGGACC
GGGACTACGATGAGGACGATGAGGACGACATCGTCTATATGGGCCAAGATGGCACTGTCT
ACCGGAAGTTCAAGTATGGGCTGCTGGATGAGACGGAAGATGATGAGTTGGAGTACGATG
ATGAGAGCTACTCTTACCAATAAACAGAGCCCCCTCCCATCTCAAACCCACCACCCACCA
CCCACCTCCCATCCCTTCCTGGTCTCTTCCTGGCTCTCAATCCTGCTGGGAGCTACCAAT
GCATTGGCTGAGGTCTGAGTGTTTGCTTTTGTCCTTACCTTGCATCCAACCCGAATATGT
AGGGATGCTGGAGTCTGCTGTGCTGCTTTTCATTAGCTGAGTGCAATGAACAGATCCTGC
AAGGAGAGAATTCGAAGGCATTTTCCCCGAGGGTATGTCAAGGGTATTAAATGCAGGAAT
CTAAAAGAACTAAGATCTGTTGAACACTCTAATGTGATTTTTAAAGTGGATGGAGAAGAG
GACCTGTAAGGGTTCTGCTTTCAAACTGTAGTTGGAGACTCACTCTCATCCCCACAACTG
CTACCTTGTAGAATTCTGATATTTGACTAAATAGAGGGGAGATGGAGTACTAGAGAGTTG
TTGGAGCTGGGGTGGGAGGTCTCTCCACTTTCAATCGTGGAAAGAAAGAAAGAAAGAAAG
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG
3' upstream sequence
AAAGAAAGAAAGAAAGAAAGACGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAAGAAA
GAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAAAGAGAGAGAGAGAGAAAGAA
AGAGAGAAAGAATAATCAATCTGTGAAGACCAAGAAATGGGACTTGAAGTTTCTTAAACA
GTACTCCTGAAGAGCAACCACCTCCTTTGACTGCTTAGGACCCATCTAAACTACAAGGAT
TAGCAGCCTCAGAGCTGACAGTCCACACGCTAGCTGGGCCCCAGCTCCTTTGCAGAAACC
CAGAACCATAGCCACCTAAGAGCAGAGGAAGGTCAGACGGAGGGAAGGCAGCACCAGGGC
CAGAAGGAAGGAAACTGTTTCCAAGACTTTCCCCCTTGTGATTTTCTAAGAGCCTCTTTG
ATAGGAAGTAATAAAAGAAAAATTGTAATAGTAACACAAAAGACAAAAATTTCACTCACG
CTCAACAATTAAATAAAGACTTCAGCTGCTAAATCAGACCAAAGTTGTCATCAATGAGTC
ATCAAAGAAGCTTGAATTCTCAGTAAGGATAGGTAGGTCAGAGCCTAACCTTTAAAAAAT
TCCCATCGTCCCTCTCAGGCTGCAAACAGCTGCCTGGGTCTCTTCACTCCTGCACTGTGC
TTTGTTCCCAGGCTTCTTTTTGCCACTCTGGTCAAGTGTGTTAGATCATGTAACTGTGGG
CACTTTTTCTGAAGGTGGTGGTTCATAGTGAAGGCACGGAGCACAAAATGACACAAACAA
AATCCCGTGGGGCTCCTTGTGACAGGTAATGCTATGCGGAGAACACCAAAAAGTGATGGG
TAGCATCATCACTTGATGACCAATCATAATACAATGAGTCGCACACCTGCCATGTGCCAG
GCACTGAGCTAATTTACGTATCTTACCCACTTCATACTTAACGACCAGCCAAATGCTGCC
ATCCATCCCTTATTTTCATAGAAAATCTGACATCTCTAAA..........

Sequence Detail Report

Gene Symbol (Gene ID) Pcsk5 (ENSMUSG00000024713)
Transcript ID ENSMUST00000025618
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 1878 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information