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Target CDS Information

Gene Symbol (Gene ID) Cplx2 (ENSMUSG00000025867)
Cross Reference
CCDS CCDS36667.1
EMBL BN000501, BN000502, D38613, ...show all
GO GO:0005829, GO:0006836, GO:0007399, ...show all
goslim_goa GO:0002376, GO:0003674, GO:0005575, ...show all
MGI_trans_name Cplx2-001
OTTP OTTMUSP00000062787
OTTT OTTMUST00000081233
protein_id AAC52272.1, BAA07604.1, CAG26661.1, ...show all
RefSeq_mRNA NM_009946.3
RefSeq_peptide NP_034076
UCSC uc029sbi.1
UniParc UPI0000027525
Uniprot/SWISSPROT P84086
Vega_transcript Cplx2-001, OTTMUST00000081233
Vega_translation 214478, OTTMUSP00000062787
Definition protein_id:ENSMUSP00000026985
translation:
MDFVMKQALGGATKDMGKMLGGEEEKDPDAQKKEEERQEALRQQEEERKAKHARMEAERE
KVRQQIRDKYGLKKKEEKEAEEKAALEQPCEGSLTRPKKAIPAGCGDEEEEEEESILDTV
LKYLPGPLQDMFKK

Chromosome 13
Length
Position(start - end)
1,039
54,378,669 - 54,379,709
Orient to Chromosome plus
Link Location : (13:54378669-54379709)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Cplx2 (ENSMUSG00000025867)
Transcript ID ENSMUST00000026985
Reports
substitution
cSNPs0
Insertion13
Deletion14
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num0
synonymous substitutions
non-synonymous substitutions
B6 transcript
(ENSMUST00000026985)
MDFVMKQALGGATKDMGKMLGGEEEKDPDAQKKEEERQEALRQQEEERKAKHARMEAERE
KVRQQIRDKYGLKKKEEKEAEEKAALEQPCEGSLTRPKKAIPAGCGDEEEEEEESILDTV
LKYLPGPLQDMFKK*
MSMv4 transcript
MDFVMKQALGGATKDMGKMLGGEEEKDPDAQKKEEERQEALRQQEEERKAKHARMEAERE
KVRQQIRDKYGLKKKEEKEAEEKAALEQPCEGSLTRPKKAIPAGCGDEEEEEEESILDTV
LKYLPGPLQDMFKK*
homology100.00 (135 / 135)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Cplx2 (ENSMUSG00000025867)
Transcript ID ENSMUST00000026985
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........CCACTCTGACATAGCTCTGATGGATGCATGAACTTCTGCACTGCTTCCAA
AGGCCAGGTGCAAGGCCCTCCCCCCTGGAGCCATTTTCCTACACCTCTGGCTGGATGAAA
AGAAGGGGCGGGGAGCCAATAGGTGGCAGGCAGAAAGGAGAGGCTCATTAGGAGAGAGGG
GGAAAGATGAGTATGGGGGGAGGCTGAGCGAGTAGTAGGGGTCCCCGTGTTGTCTACTCC
CTTCTCTTCCCTGGGCTTAGGAGGGAAAGCAGCGCCTTCTAGAATAACATAACCAGAGAA
CTATTCCTTCTTCCGAGGATAACACATCTACAGAAGACCAGGAGTAGCTCACCTAGGGTT
CCCGCTGCAATTTTGCAGCAGTCTTTCTGCTTCTGGGTCCAGAGCAGAGAGCCACTCACC
CATTAGGAGGGCCTTCCTCATCCCACACACCAGTGGTTCTGGAGTGAGTGCGTAGCTGGA
CACTACAGTCATAAACTGCAGAAACGATGTGACAGTGGACTGTCTAGTCCAGAAGCCGCT
CCCAGGCACAAAGAAGGGGTGATTAAAACTGGGGCTCCTTTAGGGAATTGGGCACCCCAA
CGGGAGTGTGCCTATCGTAGTGTGCCCAGAGTAACCAAAGAGAACTTTCCTGAAGAGGTG
ATTACTTTAGTTTCTGCTTTTAAAATCCTTTCTTCCACTCGTGCCCCCAAAGCCCTTCCA
AACCTTCGAGCTTGTGGTTCTTGAACACGGAGGAGTTGGGAATGAAGCCTAGCTGCAGGC
AGATCGGTACAGCTTAACAAGGAGAGAATAAAAGAGTAGAAAGGAGATAAGGAAGAGAGG
GGAAAATGAGGGGGAGGAGACAGTGAGAGGGAAAGGAGAATGAAGAGAGGGGGAACGGGA
AAGAGAGGGGAGAAAAGGGAGGGAGTGCAGGAGGGAGGAAAAGGGAGGGAGAGAGAGAGG
GAGGGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
1 EXON 1 54,371,349 54,371,575 - - 227
GTTTTGAATTTCCCTTCTGGAAGAGAAGCTGTACGGCGTCAGGGCCTGGCTGAGGGGCGT
GATTGGAGGGCGCCTTAGGCATCCGCCCGCCCGCGGCAGCAGCCTCGGCCCCAGCTTGCC
TGGCGGAGTTACACCAGGCAGCGGCGCGAGCTGGCTGAGCACACGGCACCGCCTGCTGGA
GTCAGCCGGAGCCCTGCAGTGGCTTAGACGGTTGCTGGGACCACCAG
INTRON 1 - 2 54,371,576 54,378,580 7,005
GTCGGTGCTGGCCGTGGGCCGGGGA..........TCTGACCCCACCTCCCCTTTTGCAG
2 EXON 2 54,378,581 54,378,699 - 1 119
GTGGGCTCATTTCCCAAAGGCAGACCAGCCAGGAGTGCTGAATGCGAATTCAGCCACGGG
CTAGAGAGCATTAACCAAAGCCTGCAGGATGGACTTCGTCATGAAGCAAGCCCTCGGAG
INTRON 2 - 3 54,378,700 54,378,811 112
GTGAGCCTGCCACCTTTCCTCACCC..........CTCCTACCACTCCACATCCCTGCAG
3 EXON 3 54,378,812 54,378,987 1 0 176
GGGCCACCAAGGACATGGGGAAGATGCTGGGGGGAGAGGAGGAGAAGGACCCAGACGCAC
AGAAGAAGGAGGAGGAGCGGCAGGAGGCCCTGAGGCAGCAGGAGGAAGAGCGCAAGGCGA
AACACGCCCGCATGGAAGCCGAGCGCGAGAAGGTCCGGCAGCAGATCCGAGACAAG
INTRON 3 - 4 54,378,988 54,379,511 524
GTCAGCACCCCTTGCAAGCCCCACC..........CCCCTCTCTGTCCTCTCTCCCCCAG
4 EXON 4 54,379,512 54,383,917 0 - 4,406
TATGGGCTGAAGAAGAAGGAAGAGAAAGAGGCAGAGGAGAAGGCAGCCCTGGAACAGCCC
TGCGAGGGAAGCCTGACCCGACCCAAGAAGGCCATCCCTGCAGGCTGTGGGGACGAGGAG
GAGGAGGAAGAGGAGAGCATCCTGGACACAGTGCTCAAATATCTGCCAGGGCCGCTGCAG
GACATGTTCAAGAAGTAACCCATCCTCCTCCGGCCCCTTCCACGTTATGACTTTTTTTTT
TTTTTTTTTTTTTTTTTGGTGTTCTTAGTCTTTCTTTTCTTTTTATTCAGTTAAGTCTCA
GTTCCAAAGGGGAAAACCTTAGTCGACCTCTGCCCCCTTACCCTAGTCAGGGACTCCTCC
CCTCTGCAGTCCCTGACAGACCCTTCATCCCAGGGTTTCTAGTCCTGTTTCACTCCCAAG
TAGCTTGAAAAAGGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGA
AGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGA
AGGAGAAGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGATAGCTTTACTCTAGCAGGGGGCATTGAACC
CAGAGCCAAAGGCATTGGTTGTCCCTCCAGAAGAAGCCCATGGTCTATGTTAATGTGGTG
ACACTCCCCCCCATACATTCCTTCATGCTCCCCACTGCCAGGAGGACCACTGTCCCCAGC
CAGCCAAAGTAATGACACATTCCAGCCTTGCCCAGCATGCTGACCTTTGGCCTCTGAACC
CCCCAGTGGGAGTCCAGGTCAGGGCAGAGGCACTGAGTGGTCTGGCTCCAGGAAGGCTAT
TCAGAGGGAGCCTGTCCTGGAGAGCCTAGCCCTGAGAGGCTCTAGCTGGGTCTGGCCAGG
TTAGAATCTGGGCAGGAGGCTTGGGCTCTCCTCTTTTCCTCTTCCTGGTGCCGCTGCTGG
CCAGGAGCACACCTCTCCCCGACCCGACCTAAAGAAGCACGGCCCCGGCCAAGCCACTCC
TTCCAAATGGATCCTCTTTGGACTTTAGCACATCTGTGGAGGAACCCAGGGCAGGGCAAC
ACCCTTATTTCTCTCTCATCTGACTTAGGTCCTGGGACCCCACTGCCAGGCTAGGCCCGA
GTTTGCCCAGCCAAGGGGCTGCCCAGACCCCCAGAAAATACTTGGAGCCATCGGGCAGTG
GTGGCCTGTGCCATGAGGCTCCTCATTGGCACATCCAAACTGCCCCCATTTCCTGTCCAC
CCTCCTTCCCTCCATGTCCTGTCCATGTGCTTCCAAGTCCCCATTGTCCCCAGGAGGACT
CTTCTTGGCCAAAGCCCCCAAACAGCTGGGGAGAAGCCAATTGCCACCTGACAAAAGACT
GTCCATTCATCCCACTGGCCAAGGGTCAGCTCTCCTCTGGGATGTATAGGACTGGTATGT
GTCCTCACGTACCACCTTGTCAAGGCTTCCTGCTCTGTGACTTGTGGAGAAATGGAGAGA
CAGAGGGGGAGGCGCAAATGAGGGATGAGCGTGTGAGTCCCCACACACTGGGTAATGCAC
GGCAGGCCCATCCTACATCTCGATGCGGCTGTGTCTTGAGATTGCATGTGTGTGTGTTAG
CTCTGTGTTGCAGGCTGTGTATCTGATGTGCCTCGTGCATATGTGTTTGTGGGATGTAGT
GTGCCTGAGTCCCAGTTCATTTTCTCGGTATGTGCTAGCCATCTCGTGTGCTTTCAGATT
GCATGTGCTAGCTTGTATATGCATGTACTTGCAAAACGGCATGTGTGTCAAGAGTGACAG
GTTACATGTTAGCTGTAGACATGTGTGCTTGAGACAGCTGTCACGTGGGCTAAGACTGGT
GTTCATGTGTGTGGGTCTAAACCAGGAAGTCGTATGCATAAGTCGTACAACTTCTTTCTC
AGAGAGCAAGAATTGGAGTAAGATGCTTCCTCCCCACCCTGAGACGGTTAGTCACAGATG
GCCACATCTGACAGGAAACCTTACTTTGGCCTAGAGTCCTCCCACCCTTGGGGGTTTCCT
ACCTGAGGTCCTCAGAATGCTACTGGGACAGACCCAGGCAGTACCCCAGGAAGCCATGCT
GGGCCCCTACCAGGGCCTATCCCAAAGGCAGGGGCCCGGGAGGGGGCGACTTGCCCTCCC
CCGAAGCCCCTGTCCCACTGGCCCCAGTTTGCATTCTGCAGGTTTTCCATTTTAGTGAAC
TTACGCTTTTATTTCAGAGAAGACAGACGTCTTCCCTGTCCGTTTCCAATAGTTAAAGCC
ATATCAGTTAGACCGCAATACTTTAAAGATAAGACTAAACAATCCATATGTGTAGGGAAC
CAGAAAAGTCCCCTGGTCTCTCCCTCCTCTAAGGAGCAGGGCCTTGGCAGCTCCAGCTCC
CGGGACTTACCCTCCTCCCACCCCCACCCTCTTGGGCCCCTGTGTCATCCCACAGGGGGC
CAGTGTTTGTGTCTATGTCTGTGGTGGGGAGCCATCTTGCACCCCTATTGTCTGCTTGTT
TCTGTTTCTTATCCTGGGCAGGATGGTCATTCTTCAGAGCCTTGGGGTCCTGGGCCAGAG
ACAGGCAGGGACCAGTCCAGGGGCCCCGGGCCTCCCTAGACCCTGAGTGTGACTTCCCCT
TCCCCAACCCCCACCCCCCCACACACACCTTGAAGGCAGGGAAGGACACTAGTGTTTTAA
AGGCCTAACCCTTCACAGATAGACCTCAAAGGTAATGAACGGCACAGTACAAAGCATCAG
ATGGGTAGTGGAGACCAAGACCTGGAGAGATGCAAATAGGCAAGGAAACCCAGCCACGCA
AGAACCCGAATGGGCCTGAGAGAGCCCAGACCCTTCAACTGAAGTCCTTGGTGGTTTCCA
TGGCTCCTCTGAGCCCAGAGCGAGCTCAGGGCTTTTCAGCCTCACCCAGTGCCCCCCAGG
CGGGGCTGGCTTAGTCTAGATTTATGTCTCCTTTCTATGCCCAGACAGCAGATTCTGAGG
TCCTTTGAAGGTGGAGGTAAGAGAATTTCTACTTGATACATACCTGGTTCCACCCACACA
AAGCCCAGGGAGATGTAATGATTGATATTTCTGACATAGCCTGGGCTATAGGGAGAAAAC
AACAGGCAACCCTGGAAGGATGCTGTGTACCACACATGCATGGGAGGGCAGAACTTGGGT
GCTTGAGCATTGGAAAGGATACATATACACACATAGCACATACATGCACACATTCACTCA
CATACATATACACACATACATACATCCATATATATACACACACATATATATACATACATA
TACACATACATAAACATACATATACACACACATATATATACATACATACACATATATATA
TACAAACATATACACACATATGTACACATACACACACATACATACACACATGCACACACA
CAGCATGGAAGATGGCTGGAGGGGGATGAGGCACATCACTGACAGGCATGTGTGCTCTTT
GGGAAGGTCATCAGGCTCCTACACCTGGAAATCACCAGCAGTGAGAAGAAAGAGCGCTTC
TCTGGGCCTCTGTGAAGATGACACAGGATATCCAGGGTACATGTCCCCCATTTCAGCTCC
AGAGAGTGAGCCCTTAGCAGCGAAGCTCCACAGTGCTTCCTTCCATGGAAGTAGGAGCTC
TATAGGCCATCCCAGGTAGGTAAATGAGAACAGGAACGAGAAGCCCAGAGACCCCTCACA
CATGGCAGAGCTGGTGAGCAAACCAGCTATCTAAAGGCCCATGGCTAGAGTAAGGGGGGC
TAAGCATGGGGCTTCCAGCCCCGAGAGTGCCCACTATGAAGTGAGCAGAGTTGCCCACCC
ACAACTCCCCTTCCATCTTCCTGTGGTTTGGCCAGCCCCTGACCTCACTGGGAGACCTGG
GGATCAGACTCCCTCCCATGGGGGATGCCTCCCGGCCAATGTCCCCTGCTCTAGTCCCCA
TTCCTAATGTCCTGCCCTTTCACCAGGGAGAGAGACCTGAGGTGCTCCTGCTGGCCCCGG
GATGGGAGTGGGAAGTCCCACTGAGACCCAGGTGAGATGGACCATCCTGCTCATGTAGGG
GAACCTCTTTCCCACAACTGTGCTGTGTCCTTGTTGCTCTGCTTCCTTTAAATGTGTCAG
TCTCTGGGGGAGGGGAGGGCCACGCCCCCCGAACTCCCTTGAACCTGACCAAAAGCCATG
GCCGTGCTCCCCACTTTGTATGATGCAAATGCTAAGATGATGTACAAAACCAACCATGAT
GACAAAGAAAAAGACCTTGTACAGCA
3' upstream sequence
GCTGTCCATCTGTCTGCTTTCTTCTGTCTGTCTGTCTGTCAGCACTGCCGGTGATGGGAG
TCAACTAACACCAATGGTTAAGGATGCACCAAACACCCTCAGTCATACCCACAGCTTCCA
GCCAGGACAATGTGGAAAAGACCTCAGAGATTAATGGAGGCCAGAGTTAGGGCTGGCCCA
AGTTCCAGGATCGATCTATTTCCCAAGGCCAACTCCACAATCCTGGGGGTTGGGGGTGGG
ATGCAGGCTGACCCTCACTCACATTCCATCTCAGACTGCCCTGCTCCACTCTTGGGTGGG
GCAGGGGGGCATCCTAAGAACACCATGAACACAATAGATGGGCAAATGTCTATCAGTTGT
TCATTCTGCAATAGATGGGGCATCTGCTCCCTGCTGAGCCTGGGAGGCTTGCGGGAAGGA
GGCTGAGGGCACACAGAAAGGACTGCACTCAGCCTTCCTCTTGGACACAGACTCACCTCG
TTGAGGGCTCAGGCTAAGACCCCTTTCACTTCCTTGCCTCTGGTCAGACCACATAGCCAG
CCCAATGTGAGGCCCCCTTTCTCCTGGCTTCTCAGTATTTCCTAATGTAATGCATGGGTC
TGTCCTCCCAGACTGCTGTACCTCCCCCTACCCCATCCTTTCCCTGGCACCCCAGCCCCA
GCTAGAGCAGCTGTCTAAACTACAAACATGAATAAGTCACCCCCTGCCCCGCACCTTCAG
CCTGCCTACAGGATAGTATCTACCCCTGGTGTTGGGGGAACAGCATCCAGATGGTCAAAA
TGTCCCTGTGTGATTGACTCCAGTGATTCCAACCTGCTAAGTCAGAGCCACACCCACTCC
GGTGTTCCAGGGGCACTCAGCCCCACCCCCACATCCAATGTCACGTCTCATTTGCATAAA
TCTCCCTCTACCTGGAATGAATGGTTGCCCTCGCCCCTCCTTGTACCCTCTAAGAATTCT
GGAGCTTCTCTAGTTCTAGCTCAGTCGTCACTCCCCTCTG..........

Sequence Detail Report

Gene Symbol (Gene ID) Cplx2 (ENSMUSG00000025867)
Transcript ID ENSMUST00000026985
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 135 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information