MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Higd2a (ENSMUSG00000025868)

Cross Reference

CCDS	CCDS26532.1
EMBL	AK005269, AK008387, BC021471
Fantom	1500016M15, 2010110M21
GO	GO:0003674, GO:0005739, GO:0005743, ...show all
goslim_goa	GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name	Higd2a-001
OTTP	OTTMUSP00000043496
OTTT	OTTMUST00000081337
protein_id	AAH21471.1, BAB23921.1, BAB25641.1
RefSeq_mRNA	NM_025933.3

RefSeq_peptide	NP_080209
UCSC	uc007qol.1
UniParc	UPI0000022714
Uniprot/SWISSPROT	Q9CQJ1
Vega_transcript	Higd2a-001, OTTMUST00000081337
Vega_translation	214495, OTTMUSP00000043496

Definition

protein_id:ENSMUSP00000026986
translation:

MAAPGPVSPEAPFDPSKPPVIEGFSPTVYSNPEGFKEKFIRKTRENPMVPIGCLGTAAAL
TYGLYCFHRGQSHRSQLMMRTRIAAQGFTVVAILLGLAASAMKSQA

Chromosome

Length
Position(start - end)

623
54,590,266 - 54,590,890

Orient to Chromosome

plus

Link

Location : (13:54590266-54590890)
/

Detail Map

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Higd2a (ENSMUSG00000025868)
Transcript ID	ENSMUST00000026986

Reports
substitution
cSNPs	0
Insertion	6
Deletion	15
SNPs	-1kb 54585992(c.-4274T>C), 54586083(c.-4183A>C), 54586112(c.-4154G>A), 54586177(c.-4089C>T), 54586235(c.-4031C>T), 54586423(c.-3843G>A), 54586768(c.-3498A>G), 54586809(c.-3457C>T), 54586890(c.-3376T>C), 54586927(c.-3339G>A), 54586999(c.-3267A>G), 54587320(c.-2946G>A), 54587469(c.-2797T>C), 54587520(c.-2746A>C), 54587539(c.-2727C>T), 54588018(c.-2248G>A), 54588070(c.-2196A>C), 54588079(c.-2187T>C), 54588165(c.-2101C>T), 54588246(c.-2020T>A), 54588537(c.-1729T>G), 54588912(c.-1354C>T), 54589350(c.-916C>A), 54589647(c.-619T>C), 54589968(c.-298C>T), 54590161(c.-105T>C), 54590194(c.-72C>T), 5'UTR 54590248(c.-18A>G), 54590254(c.-12G>T), CDS 3'UTR 54590895(c.5A>G), 54591023(c.133A>G), 54591157(c.267A>G), INTRON 54590498(c.154+79G>A), 54590499(c.154+80C>T), 54590514(c.154+95G>A), 54590516(c.154+97G>C), +1kb 54591426(c.536T>C), 54591745(c.855C>A), 54591811(c.921T>A), 54591839(c.949C>T), 54591907(c.1017C>A), 54591955(c.1065G>A), 54592017(c.1127T>C), 54592068(c.1178G>A), 54592082(c.1192T>A), 54592094(c.1204T>C), 54592101(c.1211A>G), 54592149(c.1259A>T), 54592177(c.1287C>T), 54592313(c.1423G>C), 54592571(c.1681A>G), 54592613(c.1723A>C), 54592716(c.1826A>G), 54592751(c.1861C>T), 54592827(c.1937G>A), 54592886(c.1996T>C), 54593093(c.2203A>T), 54593276(c.2386A>G), 54593299(c.2409T>C), 54593864(c.2974C>T), 54594228(c.3338C>T), 54594273(c.3383T>C), 54594385(c.3495A>C), 54594573(c.3683G>A), 54594700(c.3810G>T), 54595057(c.4167T>C), 54595064(c.4174T>C), 54595082(c.4192G>A), 54595127(c.4237T>C), 54595128(c.4238A>G), 54595152(c.4262T>A), 54595278(c.4388A>C), 54595343(c.4453G>A), 54595367(c.4477A>T), 54595459(c.4569A>C), 54595529(c.4639T>C), 54595618(c.4728C>T), 54595669(c.4779T>C), 54595697(c.4807G>T), 54595725(c.4835C>T), 54595749(c.4859T>C), 54595899(c.5009C>A), 54596135(c.5245T>C),
Insertions	-1kb 54589350 (c.-916_-915insAA), 5'UTR CDS 3'UTR INTRON +1kb 54591515 (c.625_626insAAG), 54592466 (c.1576_1577insCT), 54592693 (c.1803_1804insA), 54593849 (c.2959_2960insGGCCGT), 54594999 (c.4109_4110insTCTGC),
Deletions	-1kb 54585726 (c.-4539_-4533delCTTTAGA), 54586705 (c.-3560_-3557delGGGG), 54586872 (c.-3393_-3388delCAAAAA), 54588184 (c.-2081_-2074delAAACAAAC), 54588936 (c.-1329_-1325delTATGT), 54589146 (c.-1119_-1116delAAAA), 54589510 (c.-755_-754delAA), 5'UTR CDS 3'UTR INTRON +1kb 54591960 (c.1071delC), 54592017 (c.1128delG), 54592019 (c.1130delG), 54592862 (c.1973delC), 54593162 (c.2273delA), 54594052 (c.3163_3166delAGGT), 54595358 (c.4469delG), 54595504 (c.4615_4618delCAGA),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	0
non-synonymous num	0
synonymous substitutions
non-synonymous substitutions
B6 transcript (ENSMUST00000026986)	MAAPGPVSPEAPFDPSKPPVIEGFSPTVYSNPEGFKEKFIRKTRENPMVPIGCLGTAAAL TYGLYCFHRGQSHRSQLMMRTRIAAQGFTVVAILLGLAASAMKSQA*
MSMv4 transcript	MAAPGPVSPEAPFDPSKPPVIEGFSPTVYSNPEGFKEKFIRKTRENPMVPIGCLGTAAAL TYGLYCFHRGQSHRSQLMMRTRIAAQGFTVVAILLGLAASAMKSQA*
homology	100.00 (107 / 107)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Higd2a (ENSMUSG00000025868)
Transcript ID	ENSMUST00000026986

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........TTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAG GCCAGCCTGGTCTACAAAGTAAGTTCCAGCACAGCCAGGGCTATACAGAAAAACCCTGTC TCGAAAAACGAAAAAACAACAAAACAAAAAAAACCCCTCAAGCTCTGGGGGACAGAAAAA GATACATTCTAGAAAATTCCACTGACCTGAGAAGAAATGGTAAGCAGAGGAGGGGGCGTG AATAAAGGAGGTCGTTAAAGGTCTTTGACCAGAATTAGTGCAAGCAAAATGACTTTATCA CAAATATGGGAAGTAAGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAACAAATTCTGAAACTCTGCTCAGTGAAGGAACGTCAGGTGGGAAGGAAAATAGG AAGCGGCTAGTGTGGAGATGGGGAAAGTGCCTTGCGTTATCAGTACCTTCTTCTTACGGA GGGGAACCGCCTTGTTGGGGTCCATGGCCAACCCCATCTCCGCCAGGTTCTGCCGCACGG ATTTGGTGTGGTCCCAGGCATGTCGTATGTGGGAACTAACATCAAAGAGAGAGAGAGAAA TCGAGATTCTGTCACCTCACCTTAGATCCCAGCCCAGGCCCCCGCCTCCAAACTGGCCCC TCACCACTCAATCCGTGGCGCTGCCTTCCGACGAGCATTCCGGTTCAGACGCTTTCGGTT GACGTTGTAACCGAACTTCTGCCTCCGAGTCTTTCCCTTAGCCTTGGGCATTTCGCTAAC TGCCCCAACAGCAGCTCAAACCCTTGAAACAGCAGCTCAAACTCAAGAACCACGCTCTCA GAGCCGCGTGTTAATAGTCTCCGTCCACCCGTGCGCGCAAGGATTCTTGGGAAATGTAGT TTTAGTAGTTAGTGCCTCCACATTCACTTACTACAACTCCCAGAAAGCAACGGGCAATGG CGCCCGCGTGCTACACTCAGCAAGCTATTTCCCCGCCTCGTAGTGACCTC
1	EXON 1	54,590,207	54,590,419	-	1	213	ATCAGAAGGCGGGGTCCGGTGTCCGGATTTGTGTCCTACCTGTTTCTTTGCTGGTGGGTA TGGCGGCTCCCGGTCCTGTGAGTCCAGAGGCGCCTTTTGATCCGTCCAAGCCCCCAGTTA TCGAGGGCTTCAGCCCCACGGTCTACTCCAACCCAGAGGGCTTTAAGGAAAAGTTTATTC GCAAGACCCGTGAGAACCCAATGGTGCCTATAG
	INTRON 1 - 2	54,590,420	54,590,723			304	GTAAGTGTGTGCTGTAGGAACGGAA..........CCCGCGTGTGTTGTCCTCTCCCCAG
2	EXON 2	54,590,724	54,591,158	1	-	435	GCTGTCTGGGGACGGCGGCTGCCCTCACCTATGGCCTTTACTGCTTCCACCGCGGCCAGA GCCACCGATCCCAACTCATGATGCGCACCCGGATCGCTGCACAGGGTTTCACGGTCGTAG CCATCTTGTTGGGGTTAGCGGCATCTGCTATGAAGTCTCAAGCCTGAGTATGGCCGGGTC TTAAAGCGCCATGGAAACCATTACAAAACCCAGGAACAACAGACATCCCTGTCAGACTTG CTCCCTCCGTTTCAGACCGGACCTTATTGTCATTTGGGTGAGGAAGTGGCCGATTTTGTG ACTGATTTGCGCTTCCACCGCTGCCCCCTCCCGCTCCCAAAATCCCAGGTTCATTTCAGT TGGGTTGCATGCTTCTATTTGTGATGCGTCCCCTTAATTACTTAATAAAAGCTTATTACA CTTGTATGTGATGGA
	3' upstream sequence						CTATTTCTTAATCTCATTCCTACGATCAAAACCATGATTTTTCCTTTAAATTTTTAAGAG GGAACAGGCTGTCAGTAGGACTGGCCTTTAAAAATCAGCTAGGTCTGACAGTGCATGCCT ATTGCCTTAACTGTTCTGAAGGTTGAGGGAGAAGAAAGAATCTTGCCTGACTGCACATGA CTTCAAGAGTTCAAGATCACCGGGCAGTGGTGGCACATGCCTTTAATCCCAGCGCTTGGG AGGCAGAGGCAGGTGGGTTTCTGAGTTCGAGGCCAGCCTAGTCTACAGAGTGAGTTCCAG GACAGCCAGGGCTATACAGAGCCTGTCTCGAAACCCTGTCTCGGAAAAAAAAAAAAATGC AAGATCACTCAGTAGAGTAACTTAGACTCTGTATCATTTAAAATGGCCTGAGGGTACAGC TCAGCAGTACAGTACATAGTGATTGTGAGGCCGGAGGTTTATTCTCCAGTTGTGAAAGAG GAACATAGAGCCTAGTGCTATCCAAACTTTCCTCGGCACTGTCAAGTTACTTGGGGCACT GGTTAAAAGTAGAGATTCCCAAATGTTCATTCTTGGGATTCTAATTAAGTGAGCTGTTTG ATGTAATACGGGAAAGTTTGCCAGCAATTTCCAAGTTTCTGTAGCCTGTAGAAGAGGCCT GTCGTGGTCCTGTTGTGAGTTAGGATGTTCAAACACACACCACCACCATTCTTTGACTAC TTCTCTTACTCCGGTGCAGCCTCCTCTGAGACCCTCCACTCTGCTGATCTCTTTACCACT CCAGCTTTTGACACAGGCGTCTCAAAGGCATTTGTGATCTGTAGTCACTGTGTTGCTTTG AGGAACCGAATCCTCCCATGGGTCACCCTGCCTCTCTGAATACCTCCTGAAGGGGAAAGG GAAGAAAGTAAAGATACATTTCTAGGGCCCTGACACGTTTTCGATCTCTGAGTGGAAGGT CCGTGACTAGAGCTAGGTGTTTGTATCTCCTTCATGATCT..........

Sequence Detail Report

Gene Symbol (Gene ID)	Higd2a (ENSMUSG00000025868)
Transcript ID	ENSMUST00000026986

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 107 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information