MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Thoc3 (ENSMUSG00000025872)

Cross Reference

CCDS	CCDS26527.1
EMBL	AK010668, BC019603
Fantom	2410044K02
GO	GO:0000346, GO:0000346, GO:0000445, ...show all
goslim_goa	GO:0003674, GO:0003723, GO:0005575, ...show all
MGI_trans_name	Thoc3-001
OTTP	OTTMUSP00000034740
OTTT	OTTMUST00000068626
protein_id	AAH19603.1, BAB27103.1
RefSeq_mRNA	NM_028597.3

RefSeq_peptide	NP_082873
UCSC	uc007qod.2
UniParc	UPI0000022717
Uniprot/SWISSPROT	Q8VE80
Vega_transcript	OTTMUST00000068626, Thoc3-001
Vega_translation	214479, OTTMUSP00000034740

Definition

protein_id:ENSMUSP00000026990
translation:

MAAPAAVLGPSALGQSGPGSMAPWCSVSSGPSRYVLGMQELFRGHSKTREFPAHSAKVHS
VAWSCDGRRLASGSFDKTASVFLLEKDRLVKENNYRGHGDSVDQLCWHPSNPDLFVTASG
DKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVVTFIDAKTHRSKAEEQ
FKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPSNCICIKFDPMGKYFA
TGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLASASEDHFIDIAEVETGDK
LWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREAGTVKLFGLPNDS

Chromosome

Length
Position(start - end)

8,732
54,460,074 - 54,468,807

Orient to Chromosome

minus

Link

Location : (13:54460074-54468807)
/

Detail Map

name	Thoc3 (ENSMUSG00000025872)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Thoc3 note : THO complex 3 [Source:MGI Symbol;Acc:MGI:1920916]

name	Thoc3 (ENSMUSG00000025872)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000026990

name	Thoc3 (ENSMUSG00000025872) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS26527.1 Uniprot/SWISSPROT:Q8VE80 RefSeq_peptide:NP_082873 RefSeq_mRNA:NM_028597.3 Vega_transcript:OTTMUST00000068626 Vega_transcript:Thoc3-001 UCSC:uc007qod.2 Fantom:2410044K02 EMBL:AK010668 EMBL:BC019603 GO:GO:0000346 GO:GO:0000346 GO:GO:0000445 GO:GO:0000445 GO:GO:0003723 GO:GO:0005515 GO:GO:0005654 GO:GO:0005654 GO:GO:0005794 GO:GO:0005794 GO:GO:0006397 GO:GO:0006406 GO:GO:0006406 GO:GO:0008380 GO:GO:0016607 GO:GO:0043231 GO:GO:0043231 GO:GO:0046784 GO:GO:0046784 MGI_trans_name:Thoc3-001 Vega_translation:214479 Vega_translation:OTTMUSP00000034740 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005737 goslim_goa:GO:0005794 goslim_goa:GO:0006397 goslim_goa:GO:0006810 goslim_goa:GO:0006913 goslim_goa:GO:0008150 goslim_goa:GO:0034641 goslim_goa:GO:0043226 goslim_goa:GO:0043234 goslim_goa:GO:0044403 protein_id:AAH19603.1 protein_id:BAB27103.1 OTTP:OTTMUSP00000034740 OTTT:OTTMUST00000068626 UniParc:UPI0000022717
definition	note : transcript_id=ENSMUST00000026990 protein_id : ENSMUSP00000026990 translation : MAAPAAVLGPSALGQSGPGSMAPWCSVSSGPSRYVLGMQELFRGHSKTREFPAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLEKDRLVKENNYRGHGDSVDQLCWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVVTFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPSNCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLASASEDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREAGTVKLFGLPNDS

name
type	misc_feature
link
xref
definition	note : contig AC165145.2 35211..181942(1)

name	Thoc3 (ENSMUSG00000025872)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000068627 Vega_transcript:OTTMUST00000068627 MGI_trans_name:Thoc3-002 OTTT:OTTMUST00000068627
definition	note : processed_transcript note : transcript_id=ENSMUST00000151158

name	Thoc3 (ENSMUSG00000025872)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000081234 Vega_transcript:OTTMUST00000081234 MGI_trans_name:Thoc3-003 OTTT:OTTMUST00000081234
definition	note : retained_intron note : transcript_id=ENSMUST00000135404

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Thoc3 (ENSMUSG00000025872)
Transcript ID	ENSMUST00000026990

Reports
substitution
cSNPs	6
Insertion	12
Deletion	18
SNPs	+1kb 54468875(c.-68A>C), 54468886(c.-79T>A), 54469041(c.-234G>T), 54469298(c.-491C>T), 54469626(c.-819C>T), 54469997(c.-1190G>T), 54470405(c.-1598T>C), 54470567(c.-1760T>C), 54471075(c.-2268C>T), 54471253(c.-2446C>T), 54471390(c.-2583C>T), 54471417(c.-2610A>T), 54471670(c.-2863T>C), 54472081(c.-3274A>T), 54472228(c.-3421T>C), 54472249(c.-3442C>T), 54472322(c.-3515G>A), 54472582(c.-3775A>G), 54472585(c.-3778T>A), 54472649(c.-3842G>T), 54472782(c.-3975C>G), 54472881(c.-4074G>A), 54473007(c.-4200T>C), 54473149(c.-4342G>A), 54473304(c.-4497T>C), 54473312(c.-4505C>T), 54473557(c.-4750C>T), 5'UTR 54468821(c.-14G>A), CDS 54463833(c.640T>C), 54466242(c.567A>G), 54466317(c.492T>C), 54467833(c.417T>C), 54467899(c.351C>T), 54467947(c.303T>C), 3'UTR 54458917(c.1157A>G), 54458991(c.1083G>T), 54458992(c.1082T>C), 54459177(c.897C>T), 54459190(c.884G>C), 54459229(c.845C>T), 54459333(c.741G>A), 54459355(c.719C>A), 54459358(c.716T>C), 54459400(c.674C>T), 54459428(c.646G>T), 54459624(c.450G>A), 54459634(c.440G>C), 54459702(c.372C>T), 54459720(c.354C>T), 54459853(c.221C>A), 54460002(c.72C>T), INTRON 54461386(c.893-1149T>C), 54461787(c.893-1550G>A), 54462271(c.892+1201T>C), 54462487(c.892+985A>G), 54462754(c.892+718A>G), 54462782(c.892+690T>C), 54463205(c.892+267G>C), 54463246(c.892+226T>C), 54463255(c.892+217A>G), 54464436(c.630-593G>A), 54465437(c.629+743A>G), 54465782(c.629+398A>T), 54465852(c.629+328T>C), 54466538(c.425-154G>A), 54466562(c.425-178G>A), 54466585(c.425-201G>A), 54466653(c.425-269A>T), 54467015(c.425-631A>G), 54467025(c.425-641G>A), 54467092(c.425-708G>A), 54467123(c.424+703C>T), 54467174(c.424+652T>A), 54467175(c.424+651T>A), 54467176(c.424+650T>A), 54467311(c.424+515T>G), 54467312(c.424+514T>C), 54467313(c.424+513C>A), 54467330(c.424+496G>T), 54467476(c.424+350C>A), 54467510(c.424+316G>T), 54467545(c.424+281G>A), 54467628(c.424+198C>T), 54467735(c.424+91G>A), 54468049(c.268-67A>C), 54468133(c.268-151A>G), 54468323(c.267+218G>A), 54468335(c.267+206T>C), 54468412(c.267+129A>G), 54468413(c.267+128A>G), 54468460(c.267+81C>T), 54468482(c.267+59G>A), -1kb 54454490(c.5584T>A), 54454688(c.5386G>A), 54455804(c.4270G>T), 54455813(c.4261C>A), 54455820(c.4254G>T), 54455910(c.4164C>T), 54456081(c.3993G>A), 54456085(c.3989C>T), 54456111(c.3963A>G), 54456161(c.3913C>A), 54456197(c.3877C>T), 54456220(c.3854C>T), 54456358(c.3716G>A), 54456383(c.3691C>T), 54456401(c.3673A>G), 54456575(c.3499G>T), 54456626(c.3448T>G), 54456750(c.3324T>C), 54456819(c.3255G>T), 54456868(c.3206T>C), 54456931(c.3143C>T), 54456969(c.3105T>C), 54457004(c.3070T>C), 54457043(c.3031T>C), 54457088(c.2986G>T), 54457149(c.2925A>C), 54457155(c.2919A>G), 54457204(c.2870C>G), 54457336(c.2738A>G), 54457412(c.2662T>C), 54457810(c.2264G>A), 54457987(c.2087G>A), 54457992(c.2082G>C), 54457993(c.2081A>C), 54458030(c.2044T>C), 54458036(c.2038A>C), 54458107(c.1967T>G), 54458206(c.1868G>A), 54458299(c.1775T>C), 54458377(c.1697A>G), 54458396(c.1678C>T), 54458426(c.1648T>G), 54458584(c.1490C>G), 54458607(c.1467T>C), 54458670(c.1404G>A), 54458675(c.1399T>C), 54458710(c.1364T>G), 54458774(c.*1300A>G),
Insertions	+1kb 54471024 (c.-2218_-2217insTT), 54471041 (c.-2235_-2234insT), 54471043 (c.-2237_-2236insT), 5'UTR CDS 3'UTR 54459993 (c.80dupG), INTRON 54462036 (c.892+1435dupT), 54462917 (c.892+554_892+555insTCATGC), 54463090 (c.892+381_892+382insAA), 54463863 (c.630-21_630-20insGG), 54463866 (c.630-24_630-23insGG), 54466791 (c.425-410_425-408dupCTC), -1kb 54454362 (c.5711_5712insT), 54457187 (c.2886_*2887insTCTT),
Deletions	+1kb 54469003 (c.-200_-197delCAAA), 54469211 (c.-405delA), 54470803 (c.-1997delA), 54471080 (c.-2278_-2274delTGCAT), 54472526 (c.-3720delT), 54472716 (c.-3911_-3910delGC), 5'UTR CDS 3'UTR INTRON 54463602 (c.792-31delG), 54466075 (c.629+103_629+104delAG), 54466606 (c.425-223delG), 54466653 (c.425-275_425-270delGAAAAA), 54466682 (c.425-300_425-299delAA), 54467136 (c.424+688_424+689delAC), 54468094 (c.268-126_268-113delGGGGGGGAGGGGGT), -1kb 54455532 (c.4541delG), 54455566 (c.4504_4507delAAGA), 54456731 (c.3342delG), 54457226 (c.2844_2847delTGCT), 54457267 (c.2803_2806delCCCC),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	6
non-synonymous num	0
synonymous substitutions	54463833 (p.Leu214Leu), 54466242 (p.Ser189Ser), 54466317 (p.Val164Val), 54467833 (p.Asn139Asn), 54467899 (p.Thr117Thr), 54467947 (p.Ser101Ser),
non-synonymous substitutions
B6 transcript (ENSMUST00000026990)	MAAPAAVLGPSALGQSGPGSMAPWCSVSSGPSRYVLGMQELFRGHSKTREFPAHSAKVHS VAWSCDGRRLASGSFDKTASVFLLEKDRLVKENNYRGHGDSVDQLCWHPSNPDLFVTASG DKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVVTFIDAKTHRSKAEEQ FKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPSNCICIKFDPMGKYFA TGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLASASEDHFIDIAEVETGDK LWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREAGTVKLFGLPNDS*
MSMv4 transcript	MAAPAAVLGPSALGQSGPGSMAPWCSVSSGPSRYVLGMQELFRGHSKTREFPAHSAKVHS VAWSCDGRRLASGSFDKTASVFLLEKDRLVKENNYRGHGDSVDQLCWHPSNPDLFVTASG DKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVVTFIDAKTHRSKAEEQ FKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPSNCICIKFDPMGKYFA TGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLASASEDHFIDIAEVETGDK LWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREAGTVKLFGLPNDS*
homology	100.00 (352 / 352)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Thoc3 (ENSMUSG00000025872)
Transcript ID	ENSMUST00000026990


..........AGATCAAAAGACAGAAAAACGTCTTGGGAGGCAGAGGCAGGCGGATGTCT
GTGTGTTCGAGGCCAGCCTGGTCTGTAGAGTGAGTTCCAGGGCAGTCAGGGATACACTGA
GAAGCCCTGTCTTCAAAAACTAAAAACAAAAACAAAACCCCCGAACAAACCAAATCTCAA
ATTAACCGAACAACTTTTCCCAAGTCCAACCGACAAACCCACATTTCTTTTTTTTTTTTT
TTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTA
TAGCCCTGGCTGTCCTGGAGCTCACGTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCC
GCCTGCCTCTGCCTCCCGAGTGGTGGGATTAAAGGCGTGCGCCACCACGCCCGGCTCAAA
CCCACATTTCTTATCAATTCCTTCATTCCACAAACATCTAACCTTTCTCCAGGAGCGACA
ACTTGCAATGGCCTTTTGCTTTAAGGGCACGATGAGGACCTTACAGTGAAAAACAACTCT
AGAAAAAAGATATTTTACATGTAGGTAAACTGGAGGATTTATCTTGACTCTCTTTTTTGA
ATAAGCAAGGCTACCAAGAAACTGGTAAGAAGACCATTTAAAAAAAAAGTTGAACTCTTG
GTGGGGGGTGGGGAGGGGGAGGGAAGCAAGTCGGGCAGTGGTGGCACACGCCTTTAATCC
CAGCACTTGGGAGGCAGAGACAGGCAGTTTTCTGAGTTAGAGGCCAGCCTGGTCTAGAGT
GAGTTCCAGGACAGCCAGGAAACAAACAAAGAAACCCTTTCTCGAAAACAAAACAAAACA
AAACAAACCAAACAAAAAAAAGCGAATTTAAGGAAGAATCAGTCCTATTTCAAAAGGGAA
AGGTGGACGCGCGCTGCATGGCGGGATTTGTAGTTCCGCGAGTGAGAGGCGCCAGCGCGG
AGCGACGCGGCGCATTTTCGGCGCCTGTGCAGGGCGACGGCGCCAGACTC
AGAGTATCCAGCTTCCGGCGCGCGGTCCATGAGGAGGGAGGCATGGCGGCGCCCGCTGCGGTCCTGGGCCCCTCGGCCCTCGGCCAGAGCGGCCCCGGCTCGATGGCGCCCTGGTGCTCAGTGAGCAGTGGCCCGTCTCGTTACGTGCTCGGGATGCAGGAGCTCTTCCGAGGCCACAGCAAGACGCGCGAATTCCCGGCGCACAGTGCTAAGGTGCACTCGGTCGCCTGGAGCTGCGATGGCCGTCGCTTGGCCTCGGGGTCCTTCGACAAGACTGCCAGCGTGTTCTTGCTGGAGAAGGACCGGCTG
GTGAGCTTGTAGGGCACGGGCTTGG..........GGCATCTGGATTCTGTTCTTTTAAG
GTCAAAGAAAACAACTACCGGGGCCACGGAGATAGCGTGGACCAGCTTTGTTGGCACCCAAGCAACCCTGACCTCTTTGTCACTGCATCTGGAGATAAAACCATTCGCATCTGGGATGTGAGGACTACAAAATGCATCGCCACTGTGAACACGAAAG
GTGAGTTCAGAGAGAGGGGGTTCTG..........TGACGGATTATATCTGGGTTCCCAG
GGGAGAACATTAACATCTGTTGGAGTCCCGACGGGCAGACCATCGCTGTGGGCAACAAGGACGACGTCGTGACTTTCATTGACGCCAAGACACACCGCTCCAAAGCGGAGGAGCAGTTCAAGTTTGAGGTCAATGAGATCTCGTGGAACAACGACAACAACATGTTCTTCCTGACCAACGGCAATGGTTGCATCAACATCCTCAG
GTGAGGCACTGGCCGGGGTTGTCAG..........TTATGCTATGCGTCTTGTTTCTCAG
CTACCCAGAACTGAAGCCTGTGCAGTCCATCAATGCCCATCCTTCTAACTGCATCTGTATCAAGTTTGACCCCATGGGGAAATACTTTGCCACAGGAAGTGCAGATGCCTTGGTCAGCCTTTGGGACGTTGACGAGTTAGTGTGCGTGCGGTGCTTTTCCAG
GTGTGTAACTGACGGTCTTTTCCTG..........GATGTTTCTCTCCATCCTGTCATAG
ACTAGATTGGCCTGTGAGGACCCTCAGTTTTAGCCACGATGGGAAAATGCTGGCATCGGCTTCGGAGGACCATTTCATTGATATAGCTGAAGTCGAGACAG
GTATCTTAATTTGAATCCTTTGTGT..........AGTAACATTCTGTTCTTTTCTGTAG
GAGACAAGCTATGGGAGGTGCAGTGTGAGTCCCCGACTTTCACTGTGGCTTGGCACCCCAAGAGGCCTCTGCTGGCTTTTGCCTGTGATGACAAAGATGGCAAATACGACAGCAGTCGGGAGGCTGGAACTGTGAAGCTGTTTGGACTTCCCAATGACTCCTGAGAGGGCCGACAGCGAGAGGAGAGAGGAGGCAGGAGGCCGGGCGGACTATTTGGGCTACCTAATGACTGTACCTTTCAGGGAGAGGAGGCCTGGGCTTCCTAATGACTCCTGAGAGGACCTGATGGGAGAGGAGGCTGGGTGCAGACCTTCCTTTTGTATAGTTCAATGTAGTCTTTTGGACTTGTAGGCACCATAAATGTTTATAAATGTCATAAATGACAAAAAAAAAAAAAAAAAACCAAACCAAAAAACCAAAACCAAAACGGCCCAAAAATCTTTGGTCAGGCTGAGTGTACCTTAACCCTCTCTGTGATACTGGAGAACTGAGCTAGCTTTACTGTGGTGAGCAAGTGTCCCACATTAGCTCCAGCTCCAGCCCCAGCCCCACCTCCTGGGTTTTGTGTTGGTGTATTTGTGTTAGCAGTTCCCATCCCTCCCCCCTGCTGACAACTAGCTAATGAGGATTTTGCAAGTGCAGGTCATGGTCTGTTTTGTTTTAGGGTTCTCTAGAGGAACAAAACTGGTAGACTATCTGCCTAAGAACAGAACTGATGTGGAACATCTGTTTGTCTGTGTATATATCTGTGTCTCCGTATGGGATTTTATCAGAGTGGCTTAGAGGCTGTGGTCTGGATAGTCAGTCCATCTGTCTCCTGATGGGAAGGCCAAGGATTCAGTAGTTGTTCAGTTGTTCAGACTGGATGTCTCAGCAGTGCTAATCTGGTGCTGGAGTCCCGAGGAATCCCTGGAGAGCTGCTGATCGTGGTCTGTGTTGGAATCCTGAAGAAGTAGGTTCTGTGGTTAGCAGCAGAGGAGGCCCCGGCAGCAGGGTAGATGAACCAGGTGGTGAGAGTGAGGGCAAGCAGGGGAAAAGCCATAGCTTCCTTTTTCCCTGTTCTTTTATATAGGCTGCCACCAGCGTGTGTGTCCCAGATTTAGGGTGGGTCTTCCCACCTCAAAGGATCAAGGAAAATCTCTCACAGGTGTGCCCTGCTGGTTGGGTTTCAGTGTTTCCAGATGCCACAGTCAAAGTTGACAGCCAAGATAGCCCATCACTTGAGTAGCATAGCATGCCCTCTCCCTCTGGGAGGGCCCTGTTTTCTGGATTTGACCATGGCAGAGTTTGTTGGACATCTGCTTAGGCGGTACTGGTTTAGAGGGAGGGTAGCAGCATAGGGATGGGATTTTTGAAAAGCAATTTTGAGAACAGAGCATTCAATAAAACTGGCTTTCATTA
TGAGGTGTCTAAAGTTACTATCTTTATTCCAGGAAGATACTGCAGTTTTAAATTCTGTTT
TGGTCTTAAATTTGAGAGCTTATGGTCCAGTCTAACATTCAAAGCAAGATTCCTGAACTG
CACTGCGGGCTGCTGCGGTATTTTAAAAGCATCTGTTTATACGAGCAGGTGCACATCTGG
CCTTGTTCTACCAGGTTTTATATTAGAGCAAATTAAGGCAAACAAACACCGTAAAACAGA
CAAATACAAAATGAGATTGAGATAAATTAGAATGAAGTCAAGGCCGAGGAGATGTAGGAG
TGAGGCCATATATGATGATCTGACTGAGGAGAGTGAACTTCCACAGCACACACGGATGGA
GGAAAGCCAGTTAACTGCTTTGATGCAAGTTCTCAGTGTGTGTACAGTTGGCCTGAGCTC
ACTGTCCTCCTGCCTCAGCTTTCTGAATGCTACCATTATGGGCAGATGTCACCATTGTTG
CCAGGACCTCTCTGTCACCAGTGAGAATGGAAGAGGGTTGTCCCTGATGGACTGAATCCC
GGGCGGCTGAAAGGCGAGGTCCCTGCTGCGTCCTGTCTGCATTCTCAGTTTATACTTTTA
AAACCACAAGGTGGCGAGAAGAAGCAATGGAGATTTCACAGAGGCTTACCCACCCGCAGG
TTGTTAAGGGCAACAGAGAAGAGCAAGCGATTGAGCTCCTTCTCCAGGTCATTCTGTCCC
AGGCATCACGCGAAGTCACGCTTGGTAAGGACAAGCAGCGCTTTAAGAACATCGCTAAAG
ACGTCAGCAAATGAGCATCTCAGAATCGGCCTTTTCTACCTTCTACTTGACCATGCCTTG
CTGCCTAAGACAAATGCTCTGCAGGGCTGGTGAGATAGCTCAGTGGGTAGAGACATCTGC
ATCCAAACCTGACAGCCTACGTTCAGATCCCAGTATCCTCGTGGTGGGAGGAGCGCACCA
GCTCTGCAGCGCTGTCATTTGGCCTCCATGCTACTATTTC..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........AGATCAAAAGACAGAAAAACGTCTTGGGAGGCAGAGGCAGGCGGATGTCT GTGTGTTCGAGGCCAGCCTGGTCTGTAGAGTGAGTTCCAGGGCAGTCAGGGATACACTGA GAAGCCCTGTCTTCAAAAACTAAAAACAAAAACAAAACCCCCGAACAAACCAAATCTCAA ATTAACCGAACAACTTTTCCCAAGTCCAACCGACAAACCCACATTTCTTTTTTTTTTTTT TTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTA TAGCCCTGGCTGTCCTGGAGCTCACGTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCC GCCTGCCTCTGCCTCCCGAGTGGTGGGATTAAAGGCGTGCGCCACCACGCCCGGCTCAAA CCCACATTTCTTATCAATTCCTTCATTCCACAAACATCTAACCTTTCTCCAGGAGCGACA ACTTGCAATGGCCTTTTGCTTTAAGGGCACGATGAGGACCTTACAGTGAAAAACAACTCT AGAAAAAAGATATTTTACATGTAGGTAAACTGGAGGATTTATCTTGACTCTCTTTTTTGA ATAAGCAAGGCTACCAAGAAACTGGTAAGAAGACCATTTAAAAAAAAAGTTGAACTCTTG GTGGGGGGTGGGGAGGGGGAGGGAAGCAAGTCGGGCAGTGGTGGCACACGCCTTTAATCC CAGCACTTGGGAGGCAGAGACAGGCAGTTTTCTGAGTTAGAGGCCAGCCTGGTCTAGAGT GAGTTCCAGGACAGCCAGGAAACAAACAAAGAAACCCTTTCTCGAAAACAAAACAAAACA AAACAAACCAAACAAAAAAAAGCGAATTTAAGGAAGAATCAGTCCTATTTCAAAAGGGAA AGGTGGACGCGCGCTGCATGGCGGGATTTGTAGTTCCGCGAGTGAGAGGCGCCAGCGCGG AGCGACGCGGCGCATTTTCGGCGCCTGTGCAGGGCGACGGCGCCAGACTC
1	EXON 1	54,468,541	54,468,849	-	0	309	AGAGTATCCAGCTTCCGGCGCGCGGTCCATGAGGAGGGAGGCATGGCGGCGCCCGCTGCG GTCCTGGGCCCCTCGGCCCTCGGCCAGAGCGGCCCCGGCTCGATGGCGCCCTGGTGCTCA GTGAGCAGTGGCCCGTCTCGTTACGTGCTCGGGATGCAGGAGCTCTTCCGAGGCCACAGC AAGACGCGCGAATTCCCGGCGCACAGTGCTAAGGTGCACTCGGTCGCCTGGAGCTGCGAT GGCCGTCGCTTGGCCTCGGGGTCCTTCGACAAGACTGCCAGCGTGTTCTTGCTGGAGAAG GACCGGCTG
	INTRON 1 - 2	54,467,983	54,468,540			558	GTGAGCTTGTAGGGCACGGGCTTGG..........GGCATCTGGATTCTGTTCTTTTAAG
2	EXON 2	54,467,826	54,467,982	0	1	157	GTCAAAGAAAACAACTACCGGGGCCACGGAGATAGCGTGGACCAGCTTTGTTGGCACCCA AGCAACCCTGACCTCTTTGTCACTGCATCTGGAGATAAAACCATTCGCATCTGGGATGTG AGGACTACAAAATGCATCGCCACTGTGAACACGAAAG
	INTRON 2 - 3	54,466,385	54,467,825			1,441	GTGAGTTCAGAGAGAGGGGGTTCTG..........TGACGGATTATATCTGGGTTCCCAG
3	EXON 3	54,466,180	54,466,384	1	2	205	GGGAGAACATTAACATCTGTTGGAGTCCCGACGGGCAGACCATCGCTGTGGGCAACAAGG ACGACGTCGTGACTTTCATTGACGCCAAGACACACCGCTCCAAAGCGGAGGAGCAGTTCA AGTTTGAGGTCAATGAGATCTCGTGGAACAACGACAACAACATGTTCTTCCTGACCAACG GCAATGGTTGCATCAACATCCTCAG
	INTRON 3 - 4	54,463,844	54,466,179			2,336	GTGAGGCACTGGCCGGGGTTGTCAG..........TTATGCTATGCGTCTTGTTTCTCAG
4	EXON 4	54,463,682	54,463,843	2	2	162	CTACCCAGAACTGAAGCCTGTGCAGTCCATCAATGCCCATCCTTCTAACTGCATCTGTAT CAAGTTTGACCCCATGGGGAAATACTTTGCCACAGGAAGTGCAGATGCCTTGGTCAGCCT TTGGGACGTTGACGAGTTAGTGTGCGTGCGGTGCTTTTCCAG
	INTRON 4 - 5	54,463,573	54,463,681			109	GTGTGTAACTGACGGTCTTTTCCTG..........GATGTTTCTCTCCATCCTGTCATAG
5	EXON 5	54,463,472	54,463,572	2	1	101	ACTAGATTGGCCTGTGAGGACCCTCAGTTTTAGCCACGATGGGAAAATGCTGGCATCGGC TTCGGAGGACCATTTCATTGATATAGCTGAAGTCGAGACAG
	INTRON 5 - 6	54,460,238	54,463,471			3,234	GTATCTTAATTTGAATCCTTTGTGT..........AGTAACATTCTGTTCTTTTCTGTAG
6	EXON 6	54,458,837	54,460,237	1	-	1,401	GAGACAAGCTATGGGAGGTGCAGTGTGAGTCCCCGACTTTCACTGTGGCTTGGCACCCCA AGAGGCCTCTGCTGGCTTTTGCCTGTGATGACAAAGATGGCAAATACGACAGCAGTCGGG AGGCTGGAACTGTGAAGCTGTTTGGACTTCCCAATGACTCCTGAGAGGGCCGACAGCGAG AGGAGAGAGGAGGCAGGAGGCCGGGCGGACTATTTGGGCTACCTAATGACTGTACCTTTC AGGGAGAGGAGGCCTGGGCTTCCTAATGACTCCTGAGAGGACCTGATGGGAGAGGAGGCT GGGTGCAGACCTTCCTTTTGTATAGTTCAATGTAGTCTTTTGGACTTGTAGGCACCATAA ATGTTTATAAATGTCATAAATGACAAAAAAAAAAAAAAAAAACCAAACCAAAAAACCAAA ACCAAAACGGCCCAAAAATCTTTGGTCAGGCTGAGTGTACCTTAACCCTCTCTGTGATAC TGGAGAACTGAGCTAGCTTTACTGTGGTGAGCAAGTGTCCCACATTAGCTCCAGCTCCAG CCCCAGCCCCACCTCCTGGGTTTTGTGTTGGTGTATTTGTGTTAGCAGTTCCCATCCCTC CCCCCTGCTGACAACTAGCTAATGAGGATTTTGCAAGTGCAGGTCATGGTCTGTTTTGTT TTAGGGTTCTCTAGAGGAACAAAACTGGTAGACTATCTGCCTAAGAACAGAACTGATGTG GAACATCTGTTTGTCTGTGTATATATCTGTGTCTCCGTATGGGATTTTATCAGAGTGGCT TAGAGGCTGTGGTCTGGATAGTCAGTCCATCTGTCTCCTGATGGGAAGGCCAAGGATTCA GTAGTTGTTCAGTTGTTCAGACTGGATGTCTCAGCAGTGCTAATCTGGTGCTGGAGTCCC GAGGAATCCCTGGAGAGCTGCTGATCGTGGTCTGTGTTGGAATCCTGAAGAAGTAGGTTC TGTGGTTAGCAGCAGAGGAGGCCCCGGCAGCAGGGTAGATGAACCAGGTGGTGAGAGTGA GGGCAAGCAGGGGAAAAGCCATAGCTTCCTTTTTCCCTGTTCTTTTATATAGGCTGCCAC CAGCGTGTGTGTCCCAGATTTAGGGTGGGTCTTCCCACCTCAAAGGATCAAGGAAAATCT CTCACAGGTGTGCCCTGCTGGTTGGGTTTCAGTGTTTCCAGATGCCACAGTCAAAGTTGA CAGCCAAGATAGCCCATCACTTGAGTAGCATAGCATGCCCTCTCCCTCTGGGAGGGCCCT GTTTTCTGGATTTGACCATGGCAGAGTTTGTTGGACATCTGCTTAGGCGGTACTGGTTTA GAGGGAGGGTAGCAGCATAGGGATGGGATTTTTGAAAAGCAATTTTGAGAACAGAGCATT CAATAAAACTGGCTTTCATTA
	3' upstream sequence						TGAGGTGTCTAAAGTTACTATCTTTATTCCAGGAAGATACTGCAGTTTTAAATTCTGTTT TGGTCTTAAATTTGAGAGCTTATGGTCCAGTCTAACATTCAAAGCAAGATTCCTGAACTG CACTGCGGGCTGCTGCGGTATTTTAAAAGCATCTGTTTATACGAGCAGGTGCACATCTGG CCTTGTTCTACCAGGTTTTATATTAGAGCAAATTAAGGCAAACAAACACCGTAAAACAGA CAAATACAAAATGAGATTGAGATAAATTAGAATGAAGTCAAGGCCGAGGAGATGTAGGAG TGAGGCCATATATGATGATCTGACTGAGGAGAGTGAACTTCCACAGCACACACGGATGGA GGAAAGCCAGTTAACTGCTTTGATGCAAGTTCTCAGTGTGTGTACAGTTGGCCTGAGCTC ACTGTCCTCCTGCCTCAGCTTTCTGAATGCTACCATTATGGGCAGATGTCACCATTGTTG CCAGGACCTCTCTGTCACCAGTGAGAATGGAAGAGGGTTGTCCCTGATGGACTGAATCCC GGGCGGCTGAAAGGCGAGGTCCCTGCTGCGTCCTGTCTGCATTCTCAGTTTATACTTTTA AAACCACAAGGTGGCGAGAAGAAGCAATGGAGATTTCACAGAGGCTTACCCACCCGCAGG TTGTTAAGGGCAACAGAGAAGAGCAAGCGATTGAGCTCCTTCTCCAGGTCATTCTGTCCC AGGCATCACGCGAAGTCACGCTTGGTAAGGACAAGCAGCGCTTTAAGAACATCGCTAAAG ACGTCAGCAAATGAGCATCTCAGAATCGGCCTTTTCTACCTTCTACTTGACCATGCCTTG CTGCCTAAGACAAATGCTCTGCAGGGCTGGTGAGATAGCTCAGTGGGTAGAGACATCTGC ATCCAAACCTGACAGCCTACGTTCAGATCCCAGTATCCTCGTGGTGGGAGGAGCGCACCA GCTCTGCAGCGCTGTCATTTGGCCTCCATGCTACTATTTC..........

Sequence Detail Report

Gene Symbol (Gene ID)	Thoc3 (ENSMUSG00000025872)
Transcript ID	ENSMUST00000026990

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 352 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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