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Target CDS Information

Gene Symbol (Gene ID) Adhfe1 (ENSMUSG00000025911)
Cross Reference
EMBL AC103620
GO GO:0015993, GO:0047988, GO:0055114
goslim_goa GO:0003674, GO:0006810, GO:0008150, ...show all
MGI_trans_name Adhfe1-002
OTTP OTTMUSP00000062958
OTTT OTTMUST00000053149
UniParc UPI0002A477C3
Uniprot/SPTREMBL M0QWD9
Vega_transcript Adhfe1-002, OTTMUST00000053149
Vega_translation 178662, OTTMUSP00000062958
Definition protein_id:ENSMUSP00000137782
translation:
MAAAARARVTHLLRHLQSTACQCPTHSHTYSQDGCLKY

Chromosome 1
Length
Position(start - end)
4,848
9,548,093 - 9,552,942
Orient to Chromosome plus
Link Location : (1:9548093-9552942)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Adhfe1 (ENSMUSG00000025911)
Transcript ID ENSMUST00000027044
Reports
substitution
cSNPs1
Insertion20
Deletion31
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num1
non-synonymous num0
synonymous substitutions 9549934 (p.Thr29Thr),
non-synonymous substitutions
B6 transcript
(ENSMUST00000027044)
MAAAARARVTHLLRHLQSTACQCPTHSHTYSQDGCLKY*
MSMv4 transcript
MAAAARARVTHLLRHLQSTACQCPTHSHTYSQDGCLKY*
homology100.00 (39 / 39)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Adhfe1 (ENSMUSG00000025911)
Transcript ID ENSMUST00000027044
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........AACCTGGGCACCAATATGGAGTGTGCTTGAGAAAAACAAAGTAGTTACAG
TGGTTCTAAAAAAGACCCCTTGTTTTAGGAAAACTTTGGCCCTAACTATAATATTAAAAG
TATAGTGCTTTTTGGTGTTGGTTCAGGTGGTACATTTGGCCAATGGATTGCTTTAAGTCC
AGAAATAGTTGTCATTTTGTTTGTAACCGGTGGCTTTTGTTTAATTGGCTTGGGTTTTAG
ATATTGTCAAAATATCTGGCATTCACTATGGAACCAAGGCTGCCCTGGAACTCAGGGCCA
AGTGCTGAGATTATAATCGAGCAGCAGATTTCATGTTTATTTCTGTCCTAGATGTTTTTC
CCTGTTTCATTGTCTTATTTTGTTCTTAATAAACTTATCTTTGCATAATTAGTATTTGCA
TTATTTTTGTAAGTTATTAATAGCAATTCTAGAATTGAGGAAGGGGTGTTTTCTTTAAAG
CAAGTTGGTCTGTCAGTTGCTAGCAGTTGGGAATTGGGTTGGAGGTTACTCTTAGTGTGG
TTTCAGTTTTATAAGGTTACTTGTAGAAATGCAAGGAAAGCTCAACTTGTCTCTTAACTC
ATGGAAACACTGGATTGTTAGTGACTTTGGGTAAAGCTCTAACTAGGCTCATCTTTACTG
AACTCTTCCACTGGAGAAGAACTATAAACTCTTCCAGTTTATAGTTCTAAGTATCCATGA
GAACTTTATCAAAGCCAAGCTGTTGACAGCTAAAAGTAACCTCTAGCCCAATTCCCAACT
GCTAACAACAGGACTTAACTTTCAGAGATTAATTTGGGGTTTTGGTTGGTCAGTTTGGGG
CCTTTTTTTTTTTTTTTTTTTTTTTTTAAGTTTACGAAAAACCCAGTGGGGTTCTTGCCA
TTGAGACATTTCAGAGTTTCCTGAGAAATGAGCTAAGACTGGGTCAGGTGACCTTGCATT
GGAGGCAGAAGTTTTCCTCCTGGAGTCCAGCAGCGACCGGATTGGCTGTT
1 EXON 1 9,548,055 9,548,151 - 2 97
AGTGGGGGTGGAGTAGGCGGCGAACAAGGAGAACTGCCATGGCTGCAGCTGCACGCGCTC
GAGTCACACACTTGCTGAGGCACCTACAAAGCACAGC
INTRON 1 - 2 9,548,152 9,549,906 1,755
GTGAGTACAGGCTGCACTGAGGGTG..........ACATTCTCCTTTTCCTTTTCCCTAG
2 EXON 2 9,549,907 9,549,944 2 1 38
ATGCCAGTGCCCAACTCATTCTCATACCTACTCCCAAG
INTRON 2 - 3 9,549,945 9,552,922 2,978
GTAACACATTTTGAGTTTTCGCATC..........TACACAAATTCTTTTCTTATTTCAG
3 EXON 3 9,552,923 9,552,976 1 - 54
ATGGCTGTCTCAAATATTAGATATGGAGCAGGGGTTACGAAGGAAGTAGGCATG
INTRON 3 - 4 9,552,977 9,553,317 341
GCAAGTATTTGAGATGTCTGCAGCT..........ACTTATGAGTTAATTTTTATTATAG
4 EXON 4 9,553,318 9,553,472 - - 155
GATCTACAGAATATGGGAGCTAAGAATGTTTGCCTGATGACAGACAAGAACCTCTCCCAG
CTCCCTCCTGTACAAATAGTTATGGATTCCCTATCGACGAATGGCATCAGTTTTCAGGTT
TATGATGATGTAAGGGTGGAACCTACAGATGGAAG
INTRON 4 - 5 9,553,473 9,553,622 150
GTAATGCTATGGGCTTCTTAGTTAC..........AACCTTTGTTTTCTGTTCGCTTAAG
5 EXON 5 9,553,623 9,553,819 - - 197
CTTCATGGATGCAATTGAATTTGCCAAAAAGGGAGCGTTTGATGCCTATGTTGCTGTGGG
TGGGGGCTCCACCATGGACACCTGTAAAGCCGCCAATCTGTATGCATCCAGCCCTCACTC
TGAGTTCCTTGATTATGTCAATGCCCCCATTGGGAAGGGGAAGCCAGTAACTGTGCCTCT
TAAACCTCTGATTGCAG
INTRON 5 - 6 9,553,820 9,555,537 1,718
GTAAACACTGCTCATTTGCTTTATT..........TAATATCAATATTATTTTTTTCAAG
6 EXON 6 9,555,538 9,555,615 - - 78
TTCCAACTACCTCAGGGACTGGCAGTGAGACTACCGGGGTTGCCATTTTTGACTATGAGC
ATTTGAAAGTAAAAACTG
INTRON 6 - 7 9,555,616 9,556,999 1,384
GTAAGAATTTTATTCCTAACTCTTT..........TAACATTGAATTTCTTCTGTTTTAG
7 EXON 7 9,557,000 9,557,105 - - 106
GCATTGCTTCACGAGCCATCAAACCCACCCTGGGACTGGTTGATCCCCTGCACACTCTCC
ACATGCCTTGCCAGGTGGTTGCCAACAGTGGCTTCGATGTCCTTTG
INTRON 7 - 8 9,557,106 9,558,132 1,027
GTAAGTACCGGTGCTTCCTGGAAGG..........GTGTACTTTAAACATTTGTCTTCAG
8 EXON 8 9,558,133 9,558,285 - - 153
CCATGCTCTGGAGTCATACACCGCCATTCCCTACAGCATGCGGAGCCCCTGCCCTTCCAA
CCCCATCCAACGACCAGCATACCAGGGTAGCAACCCAATCAGCGACATCTGGGCAGTCCA
TGCACTGCAGATTGTTGCCAAATATCTGAAGAG
INTRON 8 - 9 9,558,286 9,560,108 1,823
GTATGTCAGCCTGGGGACAGAGAGA..........TGCTCCATACTTCTCTAATCCACAG
9 EXON 9 9,560,109 9,560,207 - - 99
GGCTGTCAGAAACCCAGATGATCTGGAAGCAAGGTCTAAAATGCACTTGGCAAGTGCTTT
TGCTGGCATTGGCTTCGGAAATGCTGGTGTTCATCTGTG
INTRON 9 - 10 9,560,208 9,563,508 3,301
GTAAGTGAGCATGCAATTCATTTTC..........AAAGATTTTTTTTTTTCTTTTCCAG
10 EXON 10 9,563,509 9,563,587 - - 79
CCATGGCATGTCTTACCCAATTTCAGGTTTAGTGAAGACATATAAAGCCAAGGAATATAA
TGTGGATCACCCTCTTGTG
INTRON 10 - 11 9,563,588 9,563,796 209
GTAAAAATATTTAACAATAAATTAC..........CTGTTCTGTGCATCTCTCTCCCCAG
11 EXON 11 9,563,797 9,563,893 - - 97
CCCCATGGCCTTTCTGTGGTGCTCACCTCTCCTGCAGTGTTCACCTTCACAGCCCAGATG
TTTCCAGAGCGGCACCTGGAGACAGCAGGAATATTAG
INTRON 11 - 12 9,563,894 9,566,780 2,887
GTATGAACCTTTACCCACGGCTCTG..........CCTATAGTCTGAACTTTTCTTCTAG
12 EXON 12 9,566,781 9,566,938 - - 158
GAGCCAACATCCGCACTGCCAGGATCCAAGATGCTGGGCTTGTGTTGGCAGATGCCCTCC
GAAAATTCCTATTTGACCTAAATGTTGATGACGGTCTGGCTGCTCTTGGTTATTCCAAGG
ATGACATTCCTTCATTGGTGAAAGGAACACTGCCCCAG
INTRON 12 - 13 9,566,939 9,576,190 9,252
GTAAGATTCACAGTGTGGCCTATGC..........TAACTCCTTTTATTCATTGTTCCAG
13 EXON 13 9,576,191 9,576,901 - - 711
GAAAGGGTCACGAAGCTCGCACCTCGTGCCCAGTCAGAAGAGGATTTGTCTGCTTTGTTT
GAAGCATCCATGAAACTGTACTAATTAACATATTAGTGAAAAGAATCCCCATTGGCCTTT
GCGACAGAAGTTACAAATAGCAGAAGTTGGCCAGAGCTGATGTTGCCGTCTTATCTCCAC
ACTTAACTCACCTATTGCTGGTTTGAATGTGATGTGATTTTATCCTTTGGAAGATTCCTT
GGTGCTCATTACATGGAACCCATGGGCCATACCCCAGGGGTCAGTATTCCTGTACCAAAC
CCCATCAAATACATAAGAATGCCTATCTCCAAACACTGCATGTCTAGAAATTTACCCTGA
AGAAATACTAGCTTTAGTGTGCAAAAAAAAAACAATACATACTAGGATGCACACAAGGAT
GAGTCTGACGTATTTTTGGATAGTAAAAATTAAAACAATCTAAATATTCAATACTGAGTG
AATCCTAATATAGTAAATGATAGAATACTGTGGTATTATTAATAAAAATGAAGTAAAACT
CTTGAAAATATGTCTGTTTCATAAAAGCTGGTGTCAGGAAACAAGTGGCAGAAAGGCTAT
AAAGAAGAGTCTGACTTAACTTTTCAACTGTATATGAGTGTGTCTATATAGAGAAAAAGG
TGCACATTAAAATATTAAAAGATATCAGAGAAGAGAATTCAGGAGTATAAT
3' upstream sequence
AAATTAAAGAAAAAAATGTGTACTGAGTATTTTATGCTTCCAGGTTTTTTTAAGGTGCTG
AAATTAGAACCCAGGATCTTGCACACATTAGGCAAGTAATCTACCACTGAGCCACATTCT
CAGCTCTTGGGTTTTAAGGTAGAGTCACTCTGCATGTCTTCGGTTTAAGGCTGGTTTTGA
ATTTGGGGTTCTTCTGCCTCTGTCTTCCCAGCGCTGAGATTATGCACCATACCTCACCTG
GTCTCCCATTTTGTATTTTATACATACTTATTGTCTGGGCTTGTTAAAGAAAACAATTTC
CTAATCTTAATGGGAACGGCAGGGTTGGGATGATGACTTAGTAGGCAAAGTGCTTGCCAT
CCATATGTGAAGATTTGAGTTCGGATCCTCCCCTCACATCCATGTAAATGCCAGCCACAG
CTTTGTACATCTGTAAACTTGGCACTGTGGTGGTAGGTAGAGACAAGCAGAACCCCAGGG
CTCACTGGTCAGCCAGTTGAGATTCATCGAGAGATTCTGTCTCAGAATATAAGGTAGAAA
GTAACAGGAAGACATCTAATGTCTACCTCTGATCTCTACATGTGCACACAAACACACATG
AACGCATCATACAACACACACACACTCACCTGTGAGCCATATCACCATGTACCCTACGAA
CAGCACTTCACAAGACTCAAGGCAAGCAATGGCAGCTAGTGCAGGATTGCTGTGCAGGGC
AGGAGGCTCCAGCAGGATGTGGCTACACACCTACTCCCTGCACAGCACACTCCACCTTGC
TCGGTGGAAATTTGTGAAAACTTTTTCAATTCGGAATTGGTTGACTTTCAGATGTAGAGC
CTATGAGTAATGTCTTTCCTGTACTGCTCCACGGTGTTATTTAGAGGCCCTGGGGTACCG
GATTTCTGTTCCTGTCACCTGAACCTTTATTTAACCAAGGCCTCGTTAGCTTGAAAATGT
TATAAGTATATTTTATATATTATCTACTCTTGAATGTGAG..........

Sequence Detail Report

Gene Symbol (Gene ID) Adhfe1 (ENSMUSG00000025911)
Transcript ID ENSMUST00000027044
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 39 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information