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Target CDS Information

Gene Symbol (Gene ID) Ppp1r42 (ENSMUSG00000025916)
Cross Reference
CCDS CCDS14817.1
EMBL AK005871, AK015164, AK076637, ...show all
Fantom 1700011J18, 4922502M09, 4930418G15
GO GO:0002177, GO:0003779, GO:0005515, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name Ppp1r42-001
OTTP OTTMUSP00000032540
OTTT OTTMUST00000065319
protein_id AAH22722.1, BAB24290.1, BAB29732.1, ...show all
RefSeq_mRNA NM_145692.2
RefSeq_peptide NP_663730
UCSC uc007ahb.2
UniParc UPI0000027F2C
Uniprot/SWISSPROT Q8R1Z4
Vega_transcript OTTMUST00000065319, Ppp1r42-001
Vega_translation 178686, OTTMUSP00000032540
Definition protein_id:ENSMUSP00000027049
translation:
MVRLTVDLIAKNSNLKPRKEETLAQCLKKITHINFSDRNIDSIDDLSLCRNLSVLYLYDN
RISQVTNLNYTTNLTHLYLQNNCISCIENLSSLKKLEKLYLGGNYIAVIEGLEGLEELRE
LHVESQRLPLGEKLLFDPRTLRSLAKSLSTLNISNNNIDDIKDLEILENLNHLIAVDNQL
MHVKDLELLLKKLMKLWKMDLNGNPVCLKPKYRDKLILTSKSLEFLDGKEIKDMERQFLM
NWKASKDAKKISKKRRSRSEDASNSYISNFETVHHIVPVYYPQVGKPKVIFFSDVQRYLV
HGNASSKCSQEDKTTITEDIGNLSLKESESSLTKNDIHEPHLLQNPKVKENLSEKKE

Chromosome 1
Length
Position(start - end)
34,542
9,968,820 - 10,003,363
Orient to Chromosome minus
Link Location : (1:9968820-10003363)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Ppp1r42 (ENSMUSG00000025916)
Transcript ID ENSMUST00000027049
Reports
substitution
cSNPs4
Insertion41
Deletion41
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num4
non-synonymous num0
synonymous substitutions 9978820 (p.Tyr266Tyr), 9999461 (p.Ser125Ser), 10000042 (p.Thr75Thr), 10000129 (p.Leu46Leu),
non-synonymous substitutions
B6 transcript
(ENSMUST00000027049)
MVRLTVDLIAKNSNLKPRKEETLAQCLKKITHINFSDRNIDSIDDLSLCRNLSVLYLYDN
RISQVTNLNYTTNLTHLYLQNNCISCIENLSSLKKLEKLYLGGNYIAVIEGLEGLEELRE
LHVESQRLPLGEKLLFDPRTLRSLAKSLSTLNISNNNIDDIKDLEILENLNHLIAVDNQL
MHVKDLELLLKKLMKLWKMDLNGNPVCLKPKYRDKLILTSKSLEFLDGKEIKDMERQFLM
NWKASKDAKKISKKRRSRSEDASNSYISNFETVHHIVPVYYPQVGKPKVIFFSDVQRYLV
HGNASSKCSQEDKTTITEDIGNLSLKESESSLTKNDIHEPHLLQNPKVKENLSEKKE*
MSMv4 transcript
MVRLTVDLIAKNSNLKPRKEETLAQCLKKITHINFSDRNIDSIDDLSLCRNLSVLYLYDN
RISQVTNLNYTTNLTHLYLQNNCISCIENLSSLKKLEKLYLGGNYIAVIEGLEGLEELRE
LHVESQRLPLGEKLLFDPRTLRSLAKSLSTLNISNNNIDDIKDLEILENLNHLIAVDNQL
MHVKDLELLLKKLMKLWKMDLNGNPVCLKPKYRDKLILTSKSLEFLDGKEIKDMERQFLM
NWKASKDAKKISKKRRSRSEDASNSYISNFETVHHIVPVYYPQVGKPKVIFFSDVQRYLV
HGNASSKCSQEDKTTITEDIGNLSLKESESSLTKNDIHEPHLLQNPKVKENLSEKKE*
homology100.00 (358 / 358)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Ppp1r42 (ENSMUSG00000025916)
Transcript ID ENSMUST00000027049
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........ACCCACTGACAATGGTGAGAGAAAAGAATGCTGTCCTCAGTTCTTTTCTT
TCTTTCGCTCTTTCTTTCTTTTTCTTTTACAAAGGCAGATCCTTGTTATGCTAAAGAACT
TCATACTAGTTGTTGAGGAAAACAGAAACTAACAAAATACAACAGTAAGGCTTTCTGAAA
GTTTACCCTGATCTAAGCTGAGATAAAGAGGGAATAAAACGTAAGAGGGGTGATCACTTC
GGCAGCATATGTACTAAAAGTGGAACAATACAGAGATTTGCACGGCCTCTGCACAAATAT
GACACACAAATTTGTGAAACATTCCATATTTTTGTGACTGGGAGCGTGCGGGGCAGGTGG
TGGTGGCGGCGGCGCTGATGGTGAGTGGGATGAATAAACTAAAAACAAACAAACAAACAA
AAAACAGATGGCAGTGGCTCGTGCCTTTCATCCTAACAGAGGTAGTGGATTGATGTCAGA
GTTCGAGGTCAGCCCAAGTTCCAGGACAGACAGAGCTACACAGAAAAACCCTGTCTCAAA
AGACAACAAAAACAAAAACAAAACAAAAGAGGAAAGAAAACGTGCTATTGATACCCCAAA
AGCTGGAGAATGGAACAGAGCATATCGGAACCCGAGAATCCTGAATAAGACAGGAAGCGG
CAAGCTGCGAGGAGTGCCGTGACTATCAACCCAAGTTTGGGTTTTATCCTAGCAATGAAT
GTGGAGTTCTGGCTGTACCTACAGGCTATTCCTTTGGGTCTATACAGGGGCAGGTGTGGT
TACCGGACACTAAAATAATCAAAGGTGATGGAGAGGGAAACGATAGCCTGCAAATCTTAT
TCTGCCCAAACTAACTGGTCTTTTTCGGGACCACCAGTGCACAACACCAACTCTCTGGCG
TCCCTGTCACAAAGAGCCAGACTCAAGGCGGGCCCTGCGGGCTTCCCTGACGTCACGAGA
CTTAATCTGCCTGGGCGTTTGGAGCATTTGGTCGCCTGGCAACCGCCGCT
1 EXON 1 10,009,072 10,009,136 - - 65
GGCTTTGGAGGAGCCTGGCACAAGGACACTGACCAAACCAGTTACAGACCCGACTGGACA
GAGCG
INTRON 1 - 2 10,003,454 10,009,071 5,618
GTGAGAAGCCCCCCGAAAAGCCTAG..........AATGCTGCTCCCTTGTTCCCTTCAG
2 EXON 2 10,003,235 10,003,453 - 0 219
CTTTTTGAAAGTGGAAGTAATATCTAAGCCTGCTTCTGGACATGCTGTCAAAGTGGAGTT
CTCGCTGAGAGTTTGACTTATGCAGAAACAATGGTTCGACTGACGGTGGATTTAATTGCC
AAAAACAGCAATCTTAAACCCAGAAAAGAAGAGACCCTTGCACAATGCCTGAAGAAAATA
ACACACATAAATTTCTCAGACAGAAATATAGACTCGATT
INTRON 2 - 3 10,000,138 10,003,234 3,097
GTAAGCACTTTACATTATTTTGGTC..........AGGGCCTGTTTTGTTTACTTTTCAG
3 EXON 3 9,999,971 10,000,137 0 2 167
GATGACCTTTCTCTTTGCAGAAACCTGAGTGTTTTATATTTATATGATAATCGCATTAGT
CAAGTCACTAACCTGAATTACACCACAAATCTGACGCACTTGTACCTACAGAACAATTGC
ATTTCCTGCATTGAAAACCTCAGTTCACTAAAGAAATTGGAAAAACT
INTRON 3 - 4 9,999,540 9,999,970 431
GTAAGTGCATTTCTTTTCTAATCCT..........ATTTGAAGCCATGTCTGTTTTGCAG
4 EXON 4 9,999,401 9,999,539 2 0 139
GTATCTGGGAGGCAATTACATTGCGGTCATAGAAGGCTTGGAAGGATTAGAAGAACTAAG
AGAGCTTCATGTTGAAAGCCAGAGGCTCCCTCTAGGCGAAAAGCTTCTGTTTGATCCAAG
AACTCTTCGTTCTCTAGCG
INTRON 4 - 5 9,995,263 9,999,400 4,138
GTAAGGCCACATTCAAATGTTGGGG..........GTTAATGTAGTGATTTTTCTTCCAG
5 EXON 5 9,995,146 9,995,262 0 0 117
AAATCCCTCTCTACTTTGAATATCAGCAACAATAACATTGATGACATAAAAGACTTAGAG
ATCTTGGAGAATCTTAATCACCTGATTGCAGTTGACAACCAGCTGATGCACGTGAAG
INTRON 5 - 6 9,985,710 9,995,145 9,436
GTAACATGAAGTCGACGCAAAGTAT..........CTTCTCTTTTCTTTCCTGACTACAG
6 EXON 6 9,985,592 9,985,709 0 1 118
GACTTGGAGCTTTTACTGAAAAAACTGATGAAGCTGTGGAAAATGGATCTAAATGGAAAT
CCTGTTTGTCTTAAACCAAAATACAGGGACAAACTGATACTGACGTCCAAGTCACTGG
INTRON 6 - 7 9,978,948 9,985,591 6,644
GTGAGTGTTTTACATTAACCCAATT..........TTTTTAACATACATGTCTTCTCCAG
7 EXON 7 9,978,816 9,978,947 1 1 132
AATTTCTTGATGGAAAAGAAATAAAAGATATGGAAAGACAATTCCTAATGAATTGGAAAG
CATCCAAAGATGCCAAGAAAATCAGCAAGAAAAGGAGGAGCAGAAGTGAGGATGCAAGCA
ACTCCTACATAA
INTRON 7 - 8 9,976,747 9,978,815 2,069
GTAAGTGCTCACCACTCGCCACCGT..........GCTTTTAATTCTTTGTATGCTACAG
8 EXON 8 9,976,587 9,976,746 1 2 160
GTAACTTTGAAACAGTACATCACATAGTTCCTGTTTATTACCCACAGGTGGGTAAGCCAA
AAGTAATCTTCTTCTCCGATGTACAGAGATATCTTGTACATGGAAATGCATCTTCAAAAT
GTTCCCAAGAAGATAAAACTACAATTACTGAAGACATAGG
INTRON 8 - 9 9,968,932 9,976,586 7,655
GTAGGTCCTTCAAATGTTTCTATAG..........GGTGTGTTTTTGTTTGTAAATACAG
9 EXON 9 9,968,624 9,968,931 2 - 308
GAATCTGTCCTTGAAGGAATCTGAAAGCTCGCTAACAAAAAACGATATCCATGAACCTCA
CCTTCTCCAAAATCCAAAAGTAAAGGAAAATTTGTCTGAGAAAAAGGAGTAAATTCAGCC
TCGAGTGATTTGATTTCTTCATAGAACTAGGCAACAGCATGTTTTGAGGGTTTGTGGACT
TCACTTATCTCGGTGTGTAAGTTGTTTGATTTGTTTCTTTATAGAATCTGAGACTTTGCT
TTATGTGCGTGAATTCTGGGATCTATTTACTTTATTAGCTGTTAAATAAAATTTGCCAGG
AAATAAAA
3' upstream sequence
TGTGGTTTCGTATTATGTGGTTTCTTATTCAACACAAGTCCTTTTGAATCAAGGAAATCT
GAGTGTGCGTTCTAAAGCCTAAAGCCCATTACAGTCTTAGAATCACCGTGATTCACTGAC
AAGTCCACGTTTCGGTCCATCGTGGTATAAAAAGTCCTGCGTTGCTATCTTACTGTTTGG
TATTCCCGACGTGGAAAGTTAGAAATCTGCAGCGAAATGTTCGCGAATCTATAAACTAGC
CTTGCCCTTAGTGACATTTCATATCTGATACTCAGAACCTTCAAAGAGGAAACCGCGCTG
ATTCCTATCCCGGTTCAGAGAATCTGGCCGGGCTGCGGCGAGAACCGCGTCCGCCATGGG
CTGCAGCACTGAGTCCCGCCGGCGCCGGGGCCAGCCTGAGCCTGTGGGCGAGCGGGTGCC
GAGGCGGGAAGGCGGCCGTGGCGGTGGCGGGTCTCTAGGTCACGGTGTACTGAGGAAAGG
CTTCTACTGCAAGAATCTTCACCTTGTAGAATTAAAGGCGGACGGGGACGCACACGCGAC
GACTCTGCTCCTGAAGTCCCGCTGTACTAAACCCCCGGGTCCCGTCCCAGCTGGACCACC
GTAAACTACTCTCAACCTTCCGGCCAGAGGGGGCGGGGCCAGGCGTCCGCCCCACCCCCG
AGCGGTTTGATTGATGAGTCTGTCCGCCGAGGGGGCGGCTCCGGGACGCCGCTGCCCCTA
ACCCAAGGGCTCGGGTGGGAGACCCTCTCGGCCCGACGTGGCTTTGCTGGCTTCGGACGC
CCACATAAAAGGCGGCGCAGAGCCTGGACAAGGATGGAGTGACCCACCCGCTCGACGCCC
TTGGCCGCCTATCCCTGCTCAGCCGAACCCCGCACGGCCGCTGCGGTGGGGGGAGGAAAG
GTGAGGTGACGCCAAGTCCGAGGTGAGGCCGAGTCCTGCAGCCCCGTTTCCCCGGGCGGG
CGGGCGGGCCGGCGGGCGGGCGGGGTGTGTCAGCGGGGAC..........

Sequence Detail Report

Gene Symbol (Gene ID) Ppp1r42 (ENSMUSG00000025916)
Transcript ID ENSMUST00000027049
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 358 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information