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Target CDS Information

Gene Symbol (Gene ID) Rdh10 (ENSMUSG00000025921)
Cross Reference
CCDS CCDS14830.1
EMBL AF456767, BC019796
GO GO:0001656, GO:0001701, GO:0002138, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name Rdh10-001
OTTP OTTMUSP00000030597
OTTT OTTMUST00000062152
protein_id AAH19796.2, AAN64749.1
Reactome R-MMU-162582, R-MMU-2187338, R-MMU-2453902, ...show all
RefSeq_mRNA NM_133832.3
RefSeq_peptide NP_598593
UCSC uc007ajm.1
UniParc UPI00000E8BA4
Uniprot/SWISSPROT Q8VCH7
Vega_transcript OTTMUST00000062152, Rdh10-001
Vega_translation 178759, OTTMUSP00000030597
Definition protein_id:ENSMUSP00000027053
translation:
MNIVVEFFVVTFKVLWAFVLAAARWLVRPKEKSVAGQVCLITGAGSGLGRLFALEFARRR
ALLVLWDINTQSNEETAGMVRHIYRDLEAADAAALQAGKGEEEILPPCNLQVFTYTCDVG
KRENVYLTAERVRKEVGEVSVLVNNAGVVSGHHLLECPDELIERTMMVNCHAHFWTTKAF
LPTMLEINHGHIVTVASSLGLFSTAGVEDYCASKFGVVGFHESLSHELKAAEKDGIKTTL
VCPYLVDTGMFRGCRIRKEIEPFLPPLKPDYCVKQAMRAILTDQPMVCTPRLMYIVTFMK
SILPFEAVVCMYRFLGADKCMYPFIAQRKQATNNNEAKNGI

Chromosome 1
Length
Position(start - end)
25,398
16,106,018 - 16,131,417
Orient to Chromosome plus
Link Location : (1:16106018-16131417)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Rdh10 (ENSMUSG00000025921)
Transcript ID ENSMUST00000027053
Reports
substitution
cSNPs2
Insertion25
Deletion24
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num2
non-synonymous num0
synonymous substitutions 16131171 (p.Thr289Thr), 16131393 (p.Asn334Asn),
non-synonymous substitutions
B6 transcript
(ENSMUST00000027053)
MNIVVEFFVVTFKVLWAFVLAAARWLVRPKEKSVAGQVCLITGAGSGLGRLFALEFARRR
ALLVLWDINTQSNEETAGMVRHIYRDLEAADAAALQAGKGEEEILPPCNLQVFTYTCDVG
KRENVYLTAERVRKEVGEVSVLVNNAGVVSGHHLLECPDELIERTMMVNCHAHFWTTKAF
LPTMLEINHGHIVTVASSLGLFSTAGVEDYCASKFGVVGFHESLSHELKAAEKDGIKTTL
VCPYLVDTGMFRGCRIRKEIEPFLPPLKPDYCVKQAMRAILTDQPMVCTPRLMYIVTFMK
SILPFEAVVCMYRFLGADKCMYPFIAQRKQATNNNEAKNGI*
MSMv4 transcript
MNIVVEFFVVTFKVLWAFVLAAARWLVRPKEKSVAGQVCLITGAGSGLGRLFALEFARRR
ALLVLWDINTQSNEETAGMVRHIYRDLEAADAAALQAGKGEEEILPPCNLQVFTYTCDVG
KRENVYLTAERVRKEVGEVSVLVNNAGVVSGHHLLECPDELIERTMMVNCHAHFWTTKAF
LPTMLEINHGHIVTVASSLGLFSTAGVEDYCASKFGVVGFHESLSHELKAAEKDGIKTTL
VCPYLVDTGMFRGCRIRKEIEPFLPPLKPDYCVKQAMRAILTDQPMVCTPRLMYIVTFMK
SILPFEAVVCMYRFLGADKCMYPFIAQRKQATNNNEAKNGI*
homology100.00 (342 / 342)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Rdh10 (ENSMUSG00000025921)
Transcript ID ENSMUST00000027053
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........CATAACCCGCGGGGCTGGAGGGCGACGTTGACCGACACTCTGGGCAGCCT
TCGCGGCGGTGATTCCCATTAGGCTCACTAGAGTATGAGGCTTCACGTCCTCAGCGGCTA
GCTGAGCTATGAAATCACTGTCTGTCACCTCCTCCGGCTCTCTGCGGCCCGTGGCCACGC
AGCCCTGCTCCCCCACCTCGGCTGCGCTGCCGAGGTCCTTTTTCCGCCCGACTGCCGGGC
TGTCTTCCGCAGCGCCTGATCATCGGCCGCCAGGTCCACAGTCCCTCGGTTGGCGAAAGC
AGCGAGACCGGGAAGAGTGATGACCCGAAGGTCCGAGGAGGATGGGGGGGTTCGCCGCTG
CGGGACCCGGCAGGCGCAAGCCACGGCGACCCACAGCAGGGGGCGTGAGCCGCGAAGAGT
GGCACGACGAGGGCGGGAGCCTTCGGCCGCGGTCGTGGAAGAGGGGCTGCCCCGCGCGGT
GGGGCGGCCGGCGGGAGGGCGAGCGGGGAGGGGAGGCTGGGCCGGGGGCGGGGTGCGACC
GGGGGCGGGGAGGGCCGAGCTGAGGGAGGGCCGATGCCACTGCAGCGGCCGGCGCTTCCC
GGCGGTGGGTTATATAGCGCGGAGTGTGGAGCTACCTCAGAGCCGGCTGGGAACGCTCAG
ACGCTGCGGGGCCCCGTGCCCGAGTGACAGCGGCGCGAGTGCAGGGCAGGGGACCCGAGT
CGCGCTGGCAGCTCGAGCGGTTGGCAGCCCTCGCGTGCGCCCCGCAAGTCGGCCCTTCCC
GGCGCTGCCCGCACCCTCCCGCAACTTGAGTCAAGTTGACAACTCCCGCGTCCCGACGCA
TCCGCTCGGCGCACCCCTGTCCTAGGAAGACGGGGAGCCGCTGCAGCAGCGCCGGGGACG
TTCGGGCGGCGGCGGCTTGGCCATGAGGGCAGCGCGCGTCGCCTAACTCGCGGCTGTCAC
CGCCGCTGCAGCGGGACTGGACGGACGGACGGACGCTGTGGGACAAACAG
1 EXON 1 16,105,774 16,106,306 - 1 533
GCGGCCGCCAGCAGGAGGCGCCGAGCCGGGAGCAGCGGCAGGCACAGCCCGTGGCCACTG
CGCCGAGCCCGGGCGGAACTGGCCCCGCGCAATTCAGCCCCGCAGCACCTCGGGGGCGGA
CTCCGGGCGCAGCCTTCGCGTCCGGATCGCGGTGACAAGCGCCTCCGGGGCCAGGAGCTG
GGCTGTCTGGCGCAGGGAGAGTGAGGACACGGTGCTGGGCTGCTGCGGGACCCGGGGCGT
CGCGATGAACATCGTAGTGGAGTTCTTCGTGGTCACTTTCAAAGTGCTGTGGGCGTTCGT
GCTGGCCGCGGCGCGCTGGCTGGTGCGGCCCAAGGAGAAGAGCGTGGCCGGCCAGGTGTG
CCTCATCACGGGCGCGGGCAGCGGCCTGGGCCGCCTCTTTGCTCTCGAGTTCGCCCGGCG
CCGGGCGCTGCTGGTTCTCTGGGACATCAACACGCAGAGCAATGAGGAGACCGCAGGCAT
GGTTCGCCACATCTACCGGGACCTGGAGGCGGCCGACGCTGCTGCTCTGCAAG
INTRON 1 - 2 16,106,307 16,107,794 1,488
GTAATGCCTGTGTATTGTTGAGTCA..........CCCTCATCCGGACTTCTGAGGACAG
2 EXON 2 16,107,795 16,108,030 1 0 236
CTGGAAAAGGTGAGGAGGAAATCCTGCCCCCGTGTAACTTACAGGTTTTTACCTACACTT
GTGACGTGGGGAAGAGAGAGAATGTCTACCTGACAGCTGAAAGGGTCCGCAAGGAGGTTG
GCGAGGTCTCGGTCCTGGTCAATAATGCTGGTGTGGTTTCTGGACATCACCTTCTGGAAT
GTCCTGATGAGCTCATTGAAAGAACCATGATGGTCAACTGCCACGCACACTTCTGG
INTRON 2 - 3 16,108,031 16,128,164 20,134
GTAAATATAAACATCTTTGTTTTTG..........AAAACCTATATCTTACTTCTTTCAG
3 EXON 3 16,128,165 16,128,263 0 0 99
ACCACTAAGGCCTTTCTTCCAACGATGCTAGAGATTAATCATGGCCACATTGTGACGGTC
GCGAGCTCCCTGGGACTGTTCAGCACTGCTGGAGTTGAG
INTRON 3 - 4 16,128,264 16,129,195 932
GTTTGTCAGCTCAAAGGCATTTTTC..........TTCTGTTCTCTCTTCTTTTGCTCAG
4 EXON 4 16,129,196 16,129,341 0 2 146
GATTACTGTGCCAGTAAATTTGGAGTTGTGGGTTTTCACGAGTCTCTGAGCCATGAGCTA
AAGGCTGCTGAAAAGGATGGAATTAAAACAACTCTGGTTTGCCCTTACCTTGTAGACACG
GGCATGTTCAGAGGCTGCCGAATCAG
INTRON 4 - 5 16,129,342 16,131,074 1,733
GTCAGTGGGAACCCATCTTCTACTG..........TTCATTTTTGAATGTAAATTTTCAG
5 EXON 5 16,131,075 16,131,206 2 2 132
AAAAGAAATTGAGCCCTTTTTGCCCCCCTTGAAGCCTGATTACTGTGTGAAGCAGGCTAT
GAGGGCCATCCTCACTGACCAGCCCATGGTCTGCACGCCCCGCCTCATGTACATCGTGAC
ATTCATGAAGAG
INTRON 5 - 6 16,131,207 16,131,293 87
GTGAGTGAGGGCCCTGCCCTGCCTG..........TTACTAACTGCTCTTTCCTTTGCAG
6 EXON 6 16,131,294 16,133,734 2 - 2,441
CATCCTTCCTTTTGAAGCCGTCGTGTGCATGTATCGATTTCTAGGAGCGGACAAGTGTAT
GTATCCCTTTATTGCTCAAAGAAAACAAGCCACAAACAATAATGAAGCAAAAAATGGAAT
CTAAGAGTGTTTTTGTATGGAGTGCCGTTTCTATCAGGATAGGTGGTCCGTGCACATCAA
TCAGTACTGACGGTCTGGATTCTAACCCCATGCCGACTCTTTTTTTTTTTTTCTAATCAA
CTTTTTAAAAAATAAAGTGTAAATTAACTGACTAGTGTGCTTGAAAACTGTGAGCTTGGG
TTTTTGCCAATGGGGTCTTTTCTAGACAGGGCCCTAAAAATGAGTCCAATATTTAGACAA
ACACTATGTTACATCATTATTTTTTTAATGAACATAAAGTCTAGAAATGATGACTACAGT
GTGTTTCACGTGGGTCCCCACAGAATTGATTCATTCATTATCGTGGAAGCCCAGCCAGCA
TTCAAGGACCGACAGTGTAGTGCTCTGTTGTGTTCTCGGTTCTTCTCCTGCAAGCCTGGG
TGGCTTGCTTATGGTGTCTGTGGATTTTTTGATGTCAGTTTGAGATCAGCGTAGTCTGAG
CATCACAATGAAGGCCACCAGTCTCTTTCTTAAACTTACAGTGACTAAATATTGGGTGAT
TTTCAAATTCAGTCTCTGAAATACTAAATTAAATGTTTAGAGACCTGGTTAATCCACGTT
TGTACATTTTCTACCTGTGAATCTTGCTGCATATAGAAAGTGCCCTTTCCTCACGGAGCT
GCAAACTTGTGTTAGGGGAGGAAGTGGGGGATCTTGTCTACAGGACACAGCAGCTCCACA
GAGATAATGGGAATTTCTGATTAAAAAGTCCCGGTACTTGTGCCAACTTTAATTAGCTTG
GGGAGCAAATCTTATATGGAGTGTTGTGGAAGGGTGGAAAGATTTCTTTGAAAAGTTTAT
TCACATTGTAGAACAGCAAATGACATTTTTACAGTATTTTTTTGTAAAGCAAACTATTTT
GTGCCTTGAATTTGGTATATGTGTATTAGTGAAACATTGTAAAAGTGAATTTCTACCTCT
GTATCTATGTGTACCATCCTCTTGTAAATTACTATGAACTACTATGTGATTGCTTCTGTT
TGTTCGTTCTAGGATGTCTTTTTTAAATAGTGACCAATGTTTAAGGCTGTTAAAATAAGC
CAACTTTTACAAATCGGGACGTTTTCTAAAGAACTGATTAAATACGTACATAACTGAGTT
TGTGGTTATTAGCTATCAACCTCATTATAAGGCAAAGCATTCTGAGGTCTTCCCCTGCCT
ATCTTATCCTGCTTACTCAAAGAAAATGTTTGAATGGGGTCATAATTAGGGTGGGTTTTG
CATACTCCAATCTGTAGTCTCACCATCTGCCTATAGTAGGTTCTTCACCAAGAGCTTGTT
TAGAAATGGGAAGAGAGAACAACCCCACTGCCTGTATTAGTGTGGGTGTCTCTGTTACTC
CACTGCCTGTATTAGTGTGGGTGTCTCTGTTACCCCATTGCCTGTATCAGTGTGGGTGTC
TCTGTTACTCCACTGTCTGTTTTAGTGTGGGTGTCTCTGTTACCCCACTGCCTGTATTAG
TGTGGGTGTCTCTGTTACCCCACTGCCTGTATTAGTGTGGGTGTCTCTGTTACCCCACTG
CCTGTATTAGTGTGGTTGTCTCTGTTACCCCACTGCCTGTATTAGTGTGGGTGTCTCTGT
TACCCCACTGCCTGTATTAGTGTGGGTGTCTCTGTTATCCCACTGCCTGTATTAGTGTGG
TTGTCTCTGTTATCCCACTGCCTGTATTAGTGTGGTTGTCTCTGTTACCCCACTGCCTGT
ATTAGTGTGGGTGTCTCTTACTCCACTGCCTGTATTAGTGTGGGTGTCTCTGTTATCCCA
CTGCCTGTATTAGTGTGGTTGTCTCTGTTACCCCACTGCCTGTATTAGTGTGGGTGTCTT
CTGTTACCCCACTGCCTGTATTAGTGTGGGTGTCTCTGTTCAGGGATCTCACATTCTGGA
AGGGGCCTGGCTCACTGCTGATCTTTATTATGCGTTTGGACTTCTCATTAGGAATGACAA
CCAACCATGCCTTGAGGCAGTGTAAGACTGAATTTACCACCTGCTGCTTGATTTTCAATT
ATGGGTTTAAATAAGCACTTGAAGTAATGTTCTAACAATGTTGTGTAGGTCAGCTATTTT
CAAGTTATCTAGGTCTTTTCCCACTTAGGCTAGGATATACAAAACCATTCTAGAGAAATC
TGTTAATTTAATAGTCTGTTTCGTCAGCCTTAAAGCCAACAAGAATCCTCATTACATTTA
ATTTTGTTCTCATGTGTTGGAGTCTAATCTGTTTCTATTTTGGTTTGGTTTGGCCCTTAT
AAAATGGTCCATCTCCAAGTTCAATAAACCTAATTTGTTTA
3' upstream sequence
GCTTTTTGTCTTTCATTTCCATATCCCATCCTAGTTTCCTTATTTCTGGGATCACTTGAG
TTGTCCACCTGTCTTCCTCAAGGTTATATCCAGTTTGGAAGGGACAGTGTTGAGGCAGGG
TGAGGACTACAGAGCCCCGCGAGCGAGCTGTTCTCCTCACCTGGCACCAGATTAGTAGTG
CCTTCCTAGTGTGCATTTGTGCGGCTCTGTTGTACTTCCTCAGCATGGAATCGCTTCCAC
TGAAGCCTCCATACTTGCATTGATCATTGCAGCCATTGCAAGGTTGTTGCTCTGGCTGGC
TGATTATCTGTCCCCAGACCCCACCCAACCCCCATTCCCCATGTCCCCTTCACCCAGCTT
TCACCTTGAAAGTAATGCTGACTCTAGTGGTCTCTTTAGAAAAAGAGCTGGCTCATATGA
GTGCCTAGGGCCACAGGGCTCAAGGCTGACCCCTGAGGAGTCCCAATTCTGTCCCTAGCC
AGCACTGGCCCTGTCTTTTCTAATTTTTCAACCAGTTTAATGATAATCATATTGAGTAGG
ACTCAGAAATCAGAAGTTTCAAAGCTGACAAAGATAAATTCCAACTATTGTCATCCTCTT
GATCTACAGGGTTTGCTGCTCTAACACGTAAGATTGGCATGACATGATGGAACTCCATAA
AGCCAGGCACTGTGTGTGTGTGTGTGTGTGTAAGTATCCTGTTTTCTGTGTGTGTATAAG
TAAGTATCCTGTTTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTATCCTGTT
TCTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTATCCTGTTTCTGTGT
GTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTATAAGTATCCTGTTTCTTTGTAAGGC
TATATATACCTTTCTAGTTTTTCCCAAGTTGAAAAAAGTGGCGGGCCTTTTTCAGATTGT
TTCCAACTAGCAGAAATTGTTCTAAATTGATGCTGGCCTG..........

Sequence Detail Report

Gene Symbol (Gene ID) Rdh10 (ENSMUSG00000025921)
Transcript ID ENSMUST00000027053
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 342 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information