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Target CDS Information

Gene Symbol (Gene ID) Lactb2 (ENSMUSG00000025937)
Cross Reference
CCDS CCDS14823.1
EMBL AK088932, AK143912, BC004045
Fantom E430032H21, F520011L19
GO GO:0003674, GO:0005515, GO:0005739, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name Lactb2-001
OTTP OTTMUSP00000024094
OTTT OTTMUST00000051280
protein_id AAH04045.1, BAC40659.1, BAE25598.1
RefSeq_mRNA NM_145381.2
RefSeq_peptide NP_663356
UCSC uc007aiu.2
UniParc UPI0000022750
Uniprot/SWISSPROT Q99KR3
Vega_transcript Lactb2-001, OTTMUST00000051280
Vega_translation 178737, OTTMUSP00000024094
Definition protein_id:ENSMUSP00000027071
translation:
MAAALQRIEQLSSRVVRVLGCNPGPMTLQGTNTYLVGTGSRRILIDTGEPSVPEYISCLK
QALVEFDTAIQEILVTHWHSDHSGGIVDICKNINNDTTYCIKKLRRNPQREEIIGNGEQQ
FIYIENGDVVKTEGATLRVLYTPGHTDDHMALLLEEENAIFSGDCILGEGTTIFEDLYDY
MNSLNNLLKIKANIIYPGHGPVIHNAEAKILEYISHRNNREEQIISLFRDNFEKSFTVTE
LRTMIYKDVPENLHKMAEHNLLLHLRKLEKDGKIFYTTTPVKKWKAVL

Chromosome 1
Length
Position(start - end)
33,588
13,626,861 - 13,660,450
Orient to Chromosome minus
Link Location : (1:13626861-13660450)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Lactb2 (ENSMUSG00000025937)
Transcript ID ENSMUST00000027071
Reports
substitution
cSNPs8
Insertion44
Deletion40
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num7
non-synonymous num1
synonymous substitutions 13626870 (p.Ala286Ala), 13627422 (p.Leu253Leu), 13630101 (p.Ser235Ser), 13638379 (p.Asp148Asp), 13647474 (p.Pro108Pro), 13650749 (p.Ile86Ile), 13650863 (p.Gly48Gly),
non-synonymous substitutions 13627415 (p.Lys255Arg),
B6 transcript
(ENSMUST00000027071)
MAAALQRIEQLSSRVVRVLGCNPGPMTLQGTNTYLVGTGSRRILIDTGEPSVPEYISCLK
QALVEFDTAIQEILVTHWHSDHSGGIVDICKNINNDTTYCIKKLRRNPQREEIIGNGEQQ
FIYIENGDVVKTEGATLRVLYTPGHTDDHMALLLEEENAIFSGDCILGEGTTIFEDLYDY
MNSLNNLLKIKANIIYPGHGPVIHNAEAKILEYISHRNNREEQIISLFRDNFEKSFTVTE
LRTMIYKDVPENLHKMAEHNLLLHLRKLEKDGKIFYTTTPVKKWKAVL*
MSMv4 transcript
MAAALQRIEQLSSRVVRVLGCNPGPMTLQGTNTYLVGTGSRRILIDTGEPSVPEYISCLK
QALVEFDTAIQEILVTHWHSDHSGGIVDICKNINNDTTYCIKKLRRNPQREEIIGNGEQQ
FIYIENGDVVKTEGATLRVLYTPGHTDDHMALLLEEENAIFSGDCILGEGTTIFEDLYDY
MNSLNNLLKIKANIIYPGHGPVIHNAEAKILEYISHRNNREEQIISLFRDNFEKSFTVTE
LRTMIYKDVPENLHRMAEHNLLLHLRKLEKDGKIFYTTTPVKKWKAVL*
homology99.65 (289 / 289)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Lactb2 (ENSMUSG00000025937)
Transcript ID ENSMUST00000027071
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........AGTTAAGAACTGCCGGGTGGTGGTGGCGCACGCCTTTAATCCCAGCACTT
GGGAGGCAGAGGCAGGCATATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTC
CAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAAAAAAAAAAAGAGTTAAG
AACTACGTGGGATTTTAAGAGTAGATAACTAATGGGATTTGGGGCGATAGATCAGTTATT
AAAGTGATTGCCTTATAAGCACGACAAGCAGAGGCTGATCCCCCAGAACCTATGTAAAAA
TGTGGGGCATGGTGTCTCATTTTTATAATGCCTGTACTGGGGAGATGGAGACATGGGAAT
CTCTGGGGCTGTCAACCGCTGGCCAGTCTGGCCTGGGTGGCAAGTCAACACTGGTGAAGG
GTATGCACAGTTCCTGAGTCACCTGAAATTGTCAAATTGTCTTCTGGCCTCTGCAGATAT
GCACAGTCGCTTTTATTTTCTTTCTTTCTTTTCTTTACTTTTTTTTTTTTTTCCTGTTGT
TGAGGATTAAAAAGTAATGTTCGGAGGTGGCCCTTGGCTAGACGCACACAGGTACAAGTA
AGCATTGGTTGCCATCATTTATTGTAAAAGGTAAGCTATTCTTCAAATCACCAGCCTGCC
ATTCCTTCCTAAGTTGGTGACTCAGTAATTACTCCCCATACCTGCCTAGCTTGTGACCTT
CCCTCCCCCACTTCTGGAGGTTAACTTCAATGAAGTAACTGCATTCTTCTTTATGGATAT
GTAAAGCTACTTGGAAACAAGGCTCAGAGACACAAGAAGCTCAGCGACGGAGCCGGCTGA
GGCCAGTGCGGGCGGGTCAGGCCACCTCATGCCACAGTCACCGCGAACTCATCCCTCCAC
CCCACCCCCGTCACTTGGCTGACGGGCGTGCCAGCAAGTCGTAAGATAGTGGCCACCAAT
CCGCTCCCGGCCACTGAGCGAAGTCCCACGTGATCCGCGCCGGGCCTGAC
1 EXON 1 13,660,329 13,660,546 - 2 218
GTCACGAGACCGCCGCCCTGCCCTCCGAGCCTGAGGTCGCAGCACGCTGAGTGACTTGGA
ATTCGGGTGCCGGCGGTCACCGAGGTAGATAGAGAGATGGCTGCCGCTCTGCAGCGCATC
GAGCAGCTGTCCAGTCGGGTGGTGCGCGTGTTGGGCTGCAACCCGGGTCCCATGACCCTG
CAAGGCACCAACACGTACCTGGTGGGGACCGGCAGCAG
INTRON 1 - 2 13,650,885 13,660,328 9,444
GTAAACGCCACCCCCGAGCCCCCGC..........TGATTGTCTTCCCTGTCGTTTGTAG
2 EXON 2 13,650,721 13,650,884 2 1 164
GAGAATCCTCATTGACACTGGCGAGCCATCAGTTCCAGAATATATCAGCTGTTTAAAGCA
AGCCTTGGTTGAGTTTGACACAGCAATCCAGGAAATCCTGGTGACACACTGGCATTCTGA
TCATTCTGGAGGCATAGTAGACATTTGTAAAAACATCAATAATG
INTRON 2 - 3 13,647,512 13,650,720 3,209
GTAAGCAGGAAACCATTTAGCATGC..........ATATATTTACATGTTTTATGACTAG
3 EXON 3 13,647,385 13,647,511 1 2 127
ACACCACCTACTGCATTAAAAAACTTCGACGGAATCCTCAGAGAGAAGAAATTATAGGAA
ATGGAGAACAGCAATTTATTTATATAGAAAACGGAGACGTGGTTAAGACCGAGGGAGCCA
CTCTCAG
INTRON 3 - 4 13,638,410 13,647,384 8,975
GTAACGAAACAGCCCTAACTTACAG..........CTTCCTAACCTGTGTTCTTACCTAG
4 EXON 4 13,638,231 13,638,409 2 1 179
AGTTTTGTACACTCCTGGCCACACTGATGACCACATGGCTTTACTCCTGGAGGAGGAGAA
TGCCATCTTTTCTGGGGACTGCATCCTAGGAGAAGGGACGACAATATTTGAAGACCTCTA
TGATTATATGAACTCCCTAAACAACTTACTAAAAATCAAAGCTAACATTATATATCCAG
INTRON 4 - 5 13,630,214 13,638,230 8,017
GTGAGTGATGTCTTTTGATCTAGAA..........AATTTGTATTATTCTTTTAATTCAG
5 EXON 5 13,630,065 13,630,213 1 0 149
GACATGGCCCAGTCATCCATAATGCTGAAGCTAAAATTCTGGAATATATTTCTCATAGAA
ATAACCGAGAAGAACAGATTATTTCATTATTCCGTGATAACTTTGAGAAATCGTTTACCG
TAACGGAACTTAGGACAATGATTTACAAG
INTRON 5 - 6 13,627,438 13,630,064 2,627
GTGACTTCACTTCTCTGTACATGGC..........TCCTTTTATCCTGTTTTTCTTTCAG
6 EXON 6 13,627,356 13,627,437 0 1 82
GATGTTCCAGAGAATCTACATAGGATGGCAGAGCATAATCTCTTGCTTCATTTGAGAAAA
CTAGAGAAAGATGGGAAGATAT
INTRON 6 - 7 13,626,905 13,627,355 451
GTATGTATCCTTCTGAATATTAATG..........TTTACTTTCTGTTTTTTTTTTCTAG
7 EXON 7 13,623,330 13,626,904 1 - 3,575
TCTACACAACAACTCCTGTCAAGAAATGGAAAGCTGTCCTTTAGTTACAGATCAGTGAAG
TTCTGTCTTGTTTTGCTTTTAGAAGATGGTATTTTCTTTTAGCTATAGATTATATATTTA
TAGAAAATATTAAATGCACAACTTTGAAAATAACCCTTGATACTTGTAATCCTTGATAAT
TGTAAAATATGTAAATTACATTTTATATCTGGAGGACAGGTTACTGATCTAACCTTGGTC
TTGGAAGGTTTTACCAGAAATTCAGAATCTAGCACTTTTTCAATTTTCTATGGATTAAGT
AAAGTGGTTATTAAGAATAATAGATTTTGAACAATTCAAACCAGTTAATACTTTAGAGTT
TGATTGTTAGGGTTTCTATTGCTGTAAAAAACAAAAATGACTAAGGCAGCTCTTATAAAG
GAAGACATTTAATTAGGGCTGGCTTACAGTTCAGAGATTCAGTCCAGTATCATCATGGTG
GGAAGTATGGCAGCCTGCAGACAGACATGGTGCTGGAAAAGGAGCTGAGAGTTCTACTTC
TTGATCTGAAGGCAGCCAGAACAAGACTGTCTTCTGCAGGCAGCCTGGAGGAGGCTCTCC
CAAGCCCACAGCGACACACTTCCTCCAACAAGGCCATACCTCCTAATAGTGCCACTCCCT
ATGGGCCAAGCATTCAAACACATGAGTCTATGGGGGCCGTTTCTATTCAAACCACCACAG
TTATTTGTTAGCATTTGCCAGTAATACTGCTTTCTTTAGCTACTTCAATCAACAGCACAC
ATATCTGCATACGCATTCCTTTTCTTCAGCCCTGTCAATGCCTTTTACATACCAAGTTTA
TTTCACTTTTCTATCAATTATATCATTTAAGTATTGTTTCTACAGTTCTATGCTATGTTT
ATTTTCTTGTAACGGTATCCCATAAGCAATTCATAAGTTGATCATTAACAAATACTAAAT
ATACTAATTTAAAATATTATGTGATTAATGATAAGTAATTCTTAAAATTTTATTTGATGT
GTATGAATATTTTGCCTACATGAGTATCTGTGCACTCCATGTGTGCAGTGTGCACAGAGG
CCAGAAGGGGCACTGGATTCCCTGGAACTGCAGTTACAGGTGTTAGTCACCATGTGTGTC
CACAGAATCAAACTGGGTCCTCTAGAAGAACAGCCATTGCTCAGAACTGCTGAGCCATTT
CATCTCTCCAGCCCACGACAGCATGCTTTGCAATTTTAGATTTTAGTATAGAAATGGCCA
TCCGTTTATATATGAATTATATACTAGAAAGTGTTTTCTTTTAATTAGAAGATGGCAAGA
TAGTCTTTTAAATATATAAATAACATTCTCAAATAATGGTTAGAATAGTGGTACTGCATA
GTAATTTCCTCCAAATTAAAACATTCCGTCCTGGAGGGAGACTCCTAAGACTCGGGAAGT
AAATGAAACTTAATGGGGCTCAGGAAATAAATAACTCACAAGTCTTAAAAAGTTTCTGAA
ACTTAAATAATTCAGCAGGTCCCTCCCCAAGGTTATCTCGGCAATACTGATTGCTGGAGA
GAAGAGACTTTAGCCTCCTGAGCTGTCTACAGGTAATAGAGGAGAGCTCCAGGAAGATGC
CTTTCCTGAGGCAACACCTCCCCACCCCACCCCACCCGCTGAAGTGGGCTTTTCAGTGAT
GCATTTTTATGCAAGCTTAACACATTTTTTTCTTGTTCCATGTAAATATGTCATATACCC
AGAAGTGTTCCATACTACAAAATAACTAAAAACTCAAGAATTAAAAGCCAGTGACCCAGA
TAACTCACAAATGGACAACAAATGTTTCTCCAAAGAAGATGCCTAAGAGAAAAACTGTTT
CTCGGGCTAGAGAGATGGCTCCACGGTTGAGAGCAATGACTGCTCTTCCAGAGGTCCTGA
GTTCAATTTCTAGCAACCACATGGTGGCTCACAACCATCTGTGATGGGATCTGATGCCCT
CTTCTGGTGTGTCTGAAGAGAGCAACAATGGATTCACATACATAAATTAAATAAATAATC
TTTAAAAACAAAAAAAAAAACTGTTTCTCATCTTTAACCAATACAAAGCCAAACACAAAT
TGGAACAGGTTCCAGCTTCCTGCCCATTTGGATAACTGTTTTGTTGTTTTGTTTTGTTTT
TTTTTTGTTTTTTCTGAAAATAAAAAGAGCAGCCACTGAGGTACAAAGAAACTGGGACCT
TTACAATCAGTTGATAGAGCAGCTTCTGAAAGATAAAACAGACTCACAGTATGTCTGAGC
AGTTCAGCTTCTGAGAACCATTCCCAAAGCCTGACTTAAGCAGGTATCTGCAGGGCTGAA
AGAAAAACACCTTAAAAACAGAGATGCCTCACAGATGTTGCATGGTGCATGAATTCCAAA
GACACTGTGCTACATGAGATAAGACACCAAAGGCAAACATCAGGATTCCACTTACATGAA
GCAGGAAAGTGTATAGAAGGAAAGAATTGTGAATGATTTGGAGGAAAAGGGACAGACTTA
CTCAAGTTTCAGTAAGAGTGTAAAAAGTTCTGGGCATGAATGGTGACACTAACCACAAAA
ACACTGTAAACCTGAAAGCATAGTCAGTGCCAAGTGGTGTCCCTAAAGTGATCAGTAATA
ACTGCCTTCCACGGTGCCACCACCAAAAACTAAAAAATGGTGACACATCAATAAAATTTA
GAGAATTTAGTGTCATTGGTAAATGAATAGATTAGCTTACCTCTTAGCTGCTCTTTCCCA
GAGGGTTGAATACAAACACCATTCAGTTGATCAAATTAGAAAATTTTAAAGAAAAAATCC
TTCTTGGTTTGTGTGCATCCCACATGTCCAAGTGGTCCCTATTCTACCTCCAGAGTTCTT
TACCCCTAGCCAGTCTTAGTCCTAGCTATCATCATCCCTCCTGAACCAGTGAAATGCCTG
TTACCTCTTGTTGGGGAAGAAGATGAAAAGGACATTTTGAGCTAAAAATCTGTGAAAAGC
CAGGTGGTGGCAGCACACGCCTTTAATCCCAGCACTCGGAGGCTGAGGCAGGCAGATCTC
TTGAGTTAGAGGCCTGGTCAACAGAGCAAATTTCAGGACTTGAAACTTGAAAAAAAAAAT
TTTTTTTAATAAAAAGCCATGCAGTCGTCACATTGCCACAGCATACTTCAGATAGTGCAC
ATTGCAAGTAGATCTTCTCAAAGAGGAAGGATGGGGAACTACTAAATCTATTAGTCATTT
TAAAAGCCTAGCAACAGAGCTATAAAAGCTGTGACATCTATTAAATGCTTTTTACTGGGG
ACTGTGCCAGATACTGCAGCGACAAAGGTGAGCAAAACAACATCAGGGCTTGATCGAGTT
CTTGTCCTTGTTATCAAGATGAGATATATATAGTTATGTTTGTTGAGAGTAAAGAAGAAT
ATGTAAGCCGGTGGTCTATAATAGGCTGCTGACAGATACGTGAGCTCAGTCTTACAAAGA
AAGTGGTAGCCAGAAGGAAATGCAGTATTTGTTTAAATGAGGAAAATTATTCCCATTGGA
ATAAACTGTATCTGTGTTCCTAAACAGAGAAAATC
3' upstream sequence
ATCCTGTGTGTGAACTAATTTCTATCAAAATCTCTGGTATTTATAATTGAGTCACAGTTA
ATGAGAATCTCATGAGAGCATTAACATCACACTGGAACCAGTGTACTAGAGTCACAAACA
AGGGGTCCTAACTATAAACCCAGTGGTACTCAGGAGTATGAAGCTACAGGATTTCTACTT
CAAGGCCATCCTGGGGCATATAGTGAATTCCCTATGTCAAAAATAAGTGAAGATGGATAG
ACGACACACAGGCAGAGTCTTAGTCAGGGTTTCTATTCCTGCACAAACATCATGACCAAG
AATTAAGTTGGGGAGGAAAGGGTTTATTCAGTTTACATTTCCACATTGCTGTTTATCACG
AAAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGGATACAGAAGCTGATGCAGAGGCCAT
GGAGGGATGTTTCTTACTGGCTTGGTTCCCCTGGCTTGCTCAACTTGGTTTCTTATAGAC
CCAAGACTACCAGCCCAGGGATGGTCCCACCCACAATGGGCTCTCCCCCCTTGATCACTA
ATTGAGAAAATGCCTCACAGCTGGATCTCATGGAGACATTTCATCAACTGAAGCTCCTTT
CTCTGTGATAACTCCAGCCTGTGTCAAAGTTGACACACAAAAGTAATCAGGATAGATAGA
TAGATAGATAGATAGATAGATCGATCCAGCCTGTGTCAAAGTTGACACACAAAAGCAATC
AGGATGGATAGATAGATAGATAGATAGATCCAGCCTGTGTCAAAGTTGACACACAAAAGC
AATCAGGATAGATAGATAGATAGATAGATAGACAGACAGGCAGACAGACATTATGTGTAT
ATTAATTTCTCCCATGCTTTGCACAATGGAATAATATTTAGCTGTAGGAAATACATTACC
TCCAGTGGATACCTGATTCCACAGATGATATTAAATCCTACACACACACACACCTGTAAC
CTCCTTCACCCTAGACAGTCTGGTTTAGACCGTCTGCCAC..........

Sequence Detail Report

Gene Symbol (Gene ID) Lactb2 (ENSMUSG00000025937)
Transcript ID ENSMUST00000027071
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 289 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information