top page

Tutorials are available here.

Target CDS Information

Gene Symbol (Gene ID) Khdrbs2 (ENSMUSG00000026058)
Cross Reference
CCDS CCDS14861.1
EMBL AF098796, BC066814, BC132117, ...show all
GO GO:0005070, GO:0005515, GO:0005515, ...show all
goslim_goa GO:0003674, GO:0003723, GO:0005575, ...show all
MGI_trans_name Khdrbs2-001
OTTP OTTMUSP00000067896
OTTT OTTMUST00000125036
protein_id AAD20451.1, AAH66814.1, AAI32118.1, ...show all
RefSeq_mRNA NM_133235.2
RefSeq_peptide NP_573498
UCSC uc007anp.1
UniParc UPI00000227B3
Uniprot/SWISSPROT Q9WU01
Vega_transcript Khdrbs2-001, OTTMUST00000125036
Vega_translation 178879, OTTMUSP00000067896
Definition protein_id:ENSMUSP00000027226
translation:
MGEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKTKEEELRKSG
EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
SEESGRGRGIRGRGIRITPTAPSRGRGGAVPPPPPPGRGVLTPRGTTVTRGALPVPPIAR
GVPTPRARGTAAVPGYRAPPPPAHDAYEEYGYDDGYGGEYDDQTYEAYDNSYVTPTQSVP
EYYDYGHGVNEDAYDSYAPEEWATTRSSLKAPPPRSARGGYREHPYGRY

Chromosome 1
Length
Position(start - end)
484,622
32,172,918 - 32,657,541
Orient to Chromosome plus
Link Location : (1:32172918-32657541)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Khdrbs2 (ENSMUSG00000026058)
Transcript ID ENSMUST00000027226
Reports
substitution
cSNPs5
Insertion292
Deletion373
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num5
non-synonymous num0
synonymous substitutions 32333486 (p.Leu80Leu), 32333531 (p.Thr95Thr), 32414921 (p.Asp129Asp), 32644129 (p.Asn310Asn), 32657520 (p.Glu343Glu),
non-synonymous substitutions
B6 transcript
(ENSMUST00000027226)
MGEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKTKEEELRKSG
EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
SEESGRGRGIRGRGIRITPTAPSRGRGGAVPPPPPPGRGVLTPRGTTVTRGALPVPPIAR
GVPTPRARGTAAVPGYRAPPPPAHDAYEEYGYDDGYGGEYDDQTYEAYDNSYVTPTQSVP
EYYDYGHGVNEDAYDSYAPEEWATTRSSLKAPPPRSARGGYREHPYGRY*
MSMv4 transcript
MGEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKTKEEELRKSG
EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
SEESGRGRGIRGRGIRITPTAPSRGRGGAVPPPPPPGRGVLTPRGTTVTRGALPVPPIAR
GVPTPRARGTAAVPGYRAPPPPAHDAYEEYGYDDGYGGEYDDQTYEAYDNSYVTPTQSVP
EYYDYGHGVNEDAYDSYAPEEWATTRSSLKAPPPRSARGGYREHPYGRY*
homology100.00 (350 / 350)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Khdrbs2 (ENSMUSG00000026058)
Transcript ID ENSMUST00000027226
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TTAACTTTTTAAAATGTCATACAAAAATCAATATAACATCCTAATTTCAC
CTAAAATAAATACTTAGGTAACACTGTGGACAGAATAAGAGAAATTAGGAAACTCCCAGC
AGGTTTTATATACTGGGAAAGTTGTCCCAGGTGAATGGGTGGTAGAAATATTGACAAGGG
ATTGCTTGGGAAAAGATAATTTTAAAGAAAGAATCATTTCATTTTAAGTAGACAAGGTAC
AGCACAGGGGTCCCATCTGGAAGGGAAGGGTACCTCCCTTATCCCTCCTTCCTTGGCGAT
GATTCTTGTGGGTAAAATACTCATTTAAATAAAGGTGGGGCATATACAAAGTAGTTCAGC
AGCATTCCCATGGCAGCGAAAGAGACCCTGATGTCTAAAATAGGAGAACATCAGAGCGAC
AGAAGTTAGGCATCATCTAGCTTCTTTCATTCACAATTCTCCCAGCTAAGTTTACACAGT
GAGTGAATTTTGCACCATAAGAATGGGTGGATCCCTAGAACTAATTCTGTATCACGGGCA
AGGTACACTGGAAGCGTTTTGCTCTACTACAGAATCCAGGCACTTCTTCATTTGTACATT
AGTGGACATCCTTCTGCCCCAAGATATAGGTCATGGGAAACACAGCCCACATTTTGTCTC
AGATTTCCAACCTTGCCCAAGAGTCTGCGATCATCCAGGGGAGAGACACCTGTGCCTTGG
AGACCTAGGTGAAGTGCTCAGCCTCTGTGCTCATGGGGCACACATTCTTGCTCTCTCATC
CTCGTGCCTGCCTGGCAGCCCGCACCCACTCCACAGCACTGGCCAGACCTGAGAACACGG
CGGGCTAAGGCGGCCAGGAGAGTGCGCTTGCACTTCGCACACCCCTCCCCTCCGCAGCAG
CCTCCTGCCACTCAGGCGACTCGACTTGCGGCCCCGCCCAATGATAGTCCATAGTCTCCG
CGTGCGCCCCGCCCTCGGACCCCGCTTCCAATAGGAAGCCGGCGGGGTTG
1 EXON 1 32,172,714 32,173,008 - 1 295
GGCCGCACGGGCATCCTCTCCAGCTGAGGCCGCGGCCGGAGCCTGGCTGGGGCGCGGGAG
AGGCAGGTACCAGCGCGGTCTGCGCAGCCCCAGGCGCTAGAGCTGCGCTCTCCTGTGGAA
GAACGGTTCCCGGGGGAGCCAGGGACCGAGGCGTCGGAGCGGGCGGAAATTGCGCCTGAC
CGGGCACGGTCCGAAGTCCGCGCTATGGGAGAAGAGAAATACTTGCCTGAGCTGATGGCA
GAGAAGGATAGCCTGGATCCATCTTTTGTGCACGCGTCGCGCCTTCTGGCGGAAG
INTRON 1 - 2 32,173,009 32,243,899 70,891
GTAGGACCGGCTGGGCTCCTGCCAG..........TTGTGATTATTATTTTTTCTTTCAG
2 EXON 2 32,243,900 32,244,027 1 0 128
AAATTGAGAAATTTCAAGGTTCAGATGGGAAAAAGGAAGATGAAGAAAAGAAATATCTCG
ATGTCATCAGCAACAAAAACATAAAGCTCTCTGAAAGAGTATTGATTCCTGTGAAACAGT
ATCCAAAG
INTRON 2 - 3 32,244,028 32,333,465 89,438
GTACTGCATGCATGCAGCATGTACT..........CACATGCTGTTTTTTTTTTTTTCAG
3 EXON 3 32,333,466 32,333,582 0 0 117
TTCAATTTTGTGGGGAAATTACTTGGACCAAGAGGAAACTCCTTGAAGAGGCTACAAGAA
GAAACAGGTGCTAAAATGTCTATCCTGGGCAAAGGGTCCATGCGAGATAAGACAAAG
INTRON 3 - 4 32,333,583 32,414,870 81,288
GTACTGAGCTTTGAAGTTGCTTCTT..........ATGTCTAAATATAACTTCTTCACAG
4 EXON 4 32,414,871 32,415,017 0 0 147
GAAGAAGAGCTGAGGAAGAGTGGGGAGGCCAAGTATGCCCACCTGAGTGACGAGCTGCAT
GTATTAATTGAAGTGTTTGCTCCACCCGGGGAAGCTTATTCACGGATGAGTCATGCCTTG
GAAGAGATTAAAAAATTCCTGGTTCCT
INTRON 4 - 5 32,415,018 32,467,759 52,742
GTAAGTGACTTTTGATTTTACAAAT..........ATCTCAAGGTGTTTTTATCTTCTAG
5 EXON 5 32,467,760 32,467,887 0 2 128
GACTACAATGATGAAATTCGTCAAGAGCAACTCCGGGAGTTGTCTTACTTGAATGGCTCA
GAAGAGTCTGGCCGGGGCCGAGGTATTAGAGGCAGAGGGATCAGAATAACTCCCACAGCT
CCATCAAG
INTRON 5 - 6 32,467,888 32,472,566 4,679
GTACGTGAGTTCTCACTCTGAGCGT..........TCTGCATGTCACCTATTTCTTCTAG
6 EXON 6 32,472,567 32,472,765 2 0 199
GGGCCGTGGCGGTGCTGTTCCACCACCACCACCACCTGGACGAGGTGTGCTTACCCCTCG
GGGGACCACTGTGACCCGTGGAGCTCTTCCAGTGCCCCCAATAGCAAGAGGTGTCCCCAC
ACCTCGAGCCCGGGGGACGGCAGCAGTACCAGGATACAGAGCACCCCCACCTCCAGCTCA
TGATGCTTATGAAGAATAT
INTRON 6 - 7 32,472,766 32,619,170 146,405
GTAAGTACCCCAAAGAAATTAGCAG..........AATGTTGTATTTCTTTATATTTCAG
7 EXON 7 32,619,171 32,619,253 0 2 83
GGGTATGATGATGGCTATGGGGGTGAATATGATGACCAGACCTATGAGGCTTATGATAAT
AGCTACGTGACCCCAACACAAAG
INTRON 7 - 8 32,619,254 32,644,092 24,839
GTAAGGCATTTGCTGGCGAATCACA..........TGATTCCTGTCTAAATCTGTTGCAG
8 EXON 8 32,644,093 32,644,151 2 1 59
TGTGCCTGAATACTATGACTACGGTCATGGAGTAAATGAGGATGCCTACGACAGCTACG
INTRON 8 - 9 32,644,152 32,657,443 13,292
GTAAGACCGTTTCCTTACTATGGTC..........GTTACTATCTTTCTCTTACTCATAG
9 EXON 9 32,657,444 32,658,568 1 - 1,125
CACCAGAAGAATGGGCCACAACTCGCTCCAGCCTGAAGGCACCACCACCAAGGTCAGCCA
GAGGGGGATACAGGGAACACCCCTATGGTAGATATTGAAGGTCCTCTTCATCTGTGACCT
CCTCAAAGACAATTCATAGCCTGTGGTCTCCACATAAACAGCAACAAGACAAGTAATAGT
CCTTTTTTTGTTTGTTTGTTTTTTCTGTTCTAGGAATAACTGCTCATAATTGCTCCCACT
ATTTCTTGTATTCCCTTATACTGTTAATGTGACGTGGACATTAGTATTATTTTACAAAAC
AGACTGAAAAAAAAAAGACATTGGCAAGCATACTTTATAAACCATTCTGTAGGTTGATAT
TCTCTTGATTGTTTTTTTTAATCGTTGTGTGTAAACCCCTTTTCTCTTTTCTTTTTAATT
TCCTTTTCCTTTTCCTTTTGTAAGAAAAAGCATGAATCTGTTCGATTTTTGAGTCTCAAC
CAACTAGCAGAACCTTTGTTTAGGGTTGTTAAAAGACTGTAATATGATTTTGAACTAGCT
GATAATAAAGTTGTAGATAAGATGTTTTAACCTGTCTTTTAATATATGTTAGTCAGATGG
AGATGTTCAATATGAAGTTGTAAATTTAATTTTTAAATGCTGTTTTAATGGGGTTGAAAA
TAAGCAGCTACTGTATGTATGTAGCTAACTGAATTTGTTCAGTGTTTTAACCTGTATTTG
TTAAAAAAAGAAAAAAGAAAAAAACACACATGGAGTTCCATGTGTAAGCTTCTCTAAATA
GGAACCACAATTTGTCAAATATGTTTGCCATAATTTGTCAATAAAGCTGAAGGCTTTTGT
AAAAACTAAATTTGGAATTACTTGTTTTCTAACTTTAAATGCCTGCTTTATTTCTTTTTC
AAGAGATGCCTAAAATGTTTTCTATTTAAAAATTACAAAAATGAACCCAAGCCTGTTTTA
AGATATCTGTGTAATACTTAAAAAAATGTATCAATAACTTATGGTTGTTAAATAATTTAA
AAGTTAACAAACTAAACTGTGACATGAATCATGGTTAGTAAACACTAATGTATAACATGT
TAATGGAAGAAATGGATTTAGAATAATAAATGGATTTTAAACTAT
3' upstream sequence
CCTCTAAGCTTTATCTTGCTAAACACAAATTCTGATTGACTTGTTTGCACTAGCATGTCT
CTCGTGAGAAAGAGTAATGGAGTATAAAGAGGTAAGATTACCACTTACCACTGTCTAAAT
GCCTAGTTCTTCAACCTTTGAGTTTCCCCGCACATTTAAATATCCCATCCAACATGTAAG
CGTTGCATAGATTCACGTGATTGTTTTCACTCAAAGGAGTGCGTGGACTTCATTTGCGTA
GTTTATAACAGTTTGTTTGACCAGGAAACCATCAGTGTCAATGGCTAGATGTTGCTCTTC
AACCTCAAAACACTTTATTTGTAATTTTCAGTGCTAAATATCACCGCCCTTGAAGGCAGT
TTAGAGGGCTGATATTTCTTTTGAGACTATCAGACTTGATGGCTGATGATTATTAAGGAA
ATATGTCGCAGGACTCACAGGATGACTAAACGTTAAACAGGTAACACTAATAGTAACTCT
GTAAGTTTGCCTATGCAGCAGTAATGTTAAATCTTCTCAGTTATTAAGTTCCTGATAGTT
AAAAAAGTAAACCTACAAAAAATATATATATAACAAATAGGTCTACAGGCTTTTAAAACA
ACTAATTAAAATTAACTAGAGGCAGCAAGATGATTTTACAATCTATAACCCTCAAGGTAA
TAAACAGAACTAAAATTAGCAATAACAGTAATGCAACTCTTGCTAACATCAAATGTTAAG
CTAAATTGTGATGGAGAGAAAGAAGCAAAAAACTTGACAGTAGGGATAGATACCAAAACC
GTTACTCTTTTGAACATAGTTTTTTTTGTTTATGGTGGCTTTTTGTCAATGTGATTGGTT
TACTTTTTTTGCTGCTTCTCAGCTGAGGCATTTTGCTGTTTAGTTTCTGCAGTTGGAGTT
GCATGCTAATAGTTTTATGAAGTGTGTGTTTGTCCTCGATTAAAATTGTAAACATTTGCC
TCTTAAAAATGCTGCTCAGTTATGTTTCCATTTTCTATTC..........

Sequence Detail Report

Gene Symbol (Gene ID) Khdrbs2 (ENSMUSG00000026058)
Transcript ID ENSMUST00000027226
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 350 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information