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Target CDS Information

Gene Symbol (Gene ID) Il1r2 (ENSMUSG00000026073)
Cross Reference
CCDS CCDS14909.1
EMBL AK132264, CH466536, CT010182, ...show all
Fantom 3830408L12
GO GO:0004910, GO:0005576, GO:0005886, ...show all
goslim_goa GO:0003674, GO:0004871, GO:0005575, ...show all
MGI_trans_name Il1r2-001
OTTP OTTMUSP00000068938
OTTT OTTMUST00000127995
protein_id BAE21067.1, CAA42440.1, CAJ18390.1, ...show all
Reactome R-MMU-1280215, R-MMU-168256, R-MMU-446652, ...show all
RefSeq_mRNA NM_010555.4
RefSeq_mRNA_predicted XM_006495724.2, XM_011238438.1
RefSeq_peptide NP_034685
RefSeq_peptide_predicted XP_006495787.1, XP_011236739.1, XP_011236740.1, ...show all
UCSC uc007atu.2
UniParc UPI00000227C1
Uniprot/SPTREMBL Q4FK69
Uniprot/SWISSPROT P27931
Vega_transcript Il1r2-001, OTTMUST00000127995
Vega_translation 179116, OTTMUSP00000068938
Definition protein_id:ENSMUSP00000027243
translation:
MFILLVLVTGVSAFTTPTVVHTGKVSESPITSEKPTVHGDNCQFRGREFKSELRLEGEPV
VLRCPLAPHSDISSSSHSFLTWSKLDSSQLIPRDEPRMWVKGNILWILPAVQQDSGTYIC
TFRNASHCEQMSVELKVFKNTEASLPHVSYLQISALSTTGLLVCPDLKEFISSNADGKIQ
WYKGAILLDKGNKEFLSAGDPTRLLISNTSMDDAGYYRCVMTFTYNGQEYNITRNIELRV
KGTTTEPIPVIISPLETIPASLGSRLIVPCKVFLGTGTSSNTIVWWLANSTFISAAYPRG
RVTEGLHHQYSENDENYVEVSLIFDPVTREDLHTDFKCVASNPRSSQSLHTTVKEVSSTF
SWSIALAPLSLIILVVGAIWMRRRCKRRAGKTYGLTKLRTDNQDFPSSPN

Chromosome 1
Length
Position(start - end)
22,777
40,102,429 - 40,125,207
Orient to Chromosome plus
Link Location : (1:40102429-40125207)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Il1r2 (ENSMUSG00000026073)
Transcript ID ENSMUST00000027243
Reports
substitution
cSNPs7
Insertion37
Deletion41
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num4
non-synonymous num3
synonymous substitutions 40102437 (p.Ile3Ile), 40102458 (p.Gly10Gly), 40105508 (p.Tyr118Tyr), 40112063 (p.Thr159Thr),
non-synonymous substitutions 40105463 (p.Asn103Lys), 40115082 (p.Arg203His), 40125184 (p.Asp404Asn),
B6 transcript
(ENSMUST00000027243)
MFILLVLVTGVSAFTTPTVVHTGKVSESPITSEKPTVHGDNCQFRGREFKSELRLEGEPV
VLRCPLAPHSDISSSSHSFLTWSKLDSSQLIPRDEPRMWVKGNILWILPAVQQDSGTYIC
TFRNASHCEQMSVELKVFKNTEASLPHVSYLQISALSTTGLLVCPDLKEFISSNADGKIQ
WYKGAILLDKGNKEFLSAGDPTRLLISNTSMDDAGYYRCVMTFTYNGQEYNITRNIELRV
KGTTTEPIPVIISPLETIPASLGSRLIVPCKVFLGTGTSSNTIVWWLANSTFISAAYPRG
RVTEGLHHQYSENDENYVEVSLIFDPVTREDLHTDFKCVASNPRSSQSLHTTVKEVSSTF
SWSIALAPLSLIILVVGAIWMRRRCKRRAGKTYGLTKLRTDNQDFPSSPN*
MSMv4 transcript
MFILLVLVTGVSAFTTPTVVHTGKVSESPITSEKPTVHGDNCQFRGREFKSELRLEGEPV
VLRCPLAPHSDISSSSHSFLTWSKLDSSQLIPRDEPRMWVKGKILWILPAVQQDSGTYIC
TFRNASHCEQMSVELKVFKNTEASLPHVSYLQISALSTTGLLVCPDLKEFISSNADGKIQ
WYKGAILLDKGNKEFLSAGDPTHLLISNTSMDDAGYYRCVMTFTYNGQEYNITRNIELRV
KGTTTEPIPVIISPLETIPASLGSRLIVPCKVFLGTGTSSNTIVWWLANSTFISAAYPRG
RVTEGLHHQYSENDENYVEVSLIFDPVTREDLHTDFKCVASNPRSSQSLHTTVKEVSSTF
SWSIALAPLSLIILVVGAIWMRRRCKRRAGKTYGLTKLRTDNQNFPSSPN*
homology99.27 (411 / 411)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Il1r2 (ENSMUSG00000026073)
Transcript ID ENSMUST00000027243
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........ATGTGGTTGAGAATTCTAAGCCCTATTCTGGTCAGCTGGGCAACAGAAGG
ACTCTTTGTCATACAAACAATTCTTTCTCATAAGTACTTCACAAAGTAAGGACAGGGAGA
GAAAACATGGGCTTCACACTCCTTTTGGGGAGGTAAGATGAAGACGGGGGTGGGGGGCAG
GGGATGAGATTTGCATTTGTTCTTATTCCTACATCATTCTGGAGGTCGGAGGTCTGCGTG
GGCCTCAGTGGGCTAGAATGAATTGTAGTCCATACAGGGTCCCTGGAGCCACAAGGGCAG
CATCCATGTCTTGGGTTTTTGTCCAGCCTCTGGCTCTCTGGCTCATGGACTGCAGCCCTG
CACACACCATCCTCTTCCTCCTTTGGCTGTCTTACCACTTTTTCCTGAAGCACCAAACCC
GAGTCTGTCTCCGGACTTGGAAATCCTTAACTTACATTAGCAGTCACTTTCTCTACATTA
AGCAGCATGTTCCCAGCTTCCAAAGACTCAGACAAAAAGTTAAAAACAAAACCAACCAAA
CAAACAAACAAACAAAAAGCCAAACAAAGGCCCCCCTAAAACAAGCCCATCCATTTAATC
CTCCTCCTAGTCAAGAAGAGTTCCTTGGGGGTGAGAGTGGGGATCTTGTGTCCCACTCAT
TTAAAACCCTCCTTTTCTCTTTAATGGGACCATGGTTGGGTTTTAAGCAGCATCCAGCAG
ATGGGGTGAAATCTTGCCTGTGAAACTGTTTACAACTTCTTCATGTACAGCCAGCATCAC
TTTAAAATGTGTTCTTGGCTGGAAGCATGCCATTCTAGCGACACACACACACACACACAC
ACACACACACACACACTCAAATAAGGAAACTCAGAGTTTCCTAGGCCACTTCCCCATATG
GCAAGGATGTACGCACAAAGCATCATGAGCAGGGTGCTCCCCGTGAGCAGGGAAAAGGTG
TGTCCACCACCACCCAATTAGAGTGAGTGACACAGGCCAGTTAGGAAACC
1 EXON 1 40,084,698 40,084,819 - - 122
ACAAGCAGGAGCCTATAAATCCCTGAGGGGGCTGCTGGGACATCACAGAAGGTGAAAGTC
TGGCCCAGCAGCCTTCCCCAGTCAGGCAAGAAGCAGCAAGGTACAAGAATACACAGCTGC
AG
INTRON 1 - 2 40,084,820 40,102,388 17,569
GTAAGAAGGTGGGAAAGAGGCAGGG..........CTCCTCCCTCTTTTTCCTCCCATAG
2 EXON 2 40,102,389 40,102,537 - 1 149
GCTCCAAGGGTCCTGTGCGCTCAGGAAGTTGGTGCGGACAATGTTCATTTTGCTTGTGTT
AGTAACTGGGGTTTCTGCTTTCACCACTCCAACAGTGGTGCACACAGGAAAGGTTTCTGA
ATCCCCCATTACATCGGAGAAGCCCACAG
INTRON 2 - 3 40,102,538 40,105,263 2,726
GTGAGGAACGAAACGACCACTTCAG..........AATGCCCACTATCTCTGACTTACAG
3 EXON 3 40,105,264 40,105,522 1 2 259
TCCATGGAGACAACTGTCAGTTTCGTGGCAGAGAGTTCAAATCTGAATTGAGGCTGGAAG
GTGAACCTGTGGTTCTGAGGTGCCCCTTGGCACCTCACTCCGACATCTCCAGCAGTTCCC
ATAGTTTTCTGACCTGGAGTAAATTGGACTCTTCTCAGCTGATCCCAAGAGATGAGCCAA
GGATGTGGGTGAAGGGTAAGATACTCTGGATTCTGCCAGCAGTGCAGCAAGACTCTGGTA
CCTATATTTGCACATTCAG
INTRON 3 - 4 40,105,523 40,111,954 6,432
GTAAGGCTCTTTGGGTCTGGGGTAA..........TTCCTTTTTCTTAACAAACAATTAG
4 EXON 4 40,111,955 40,112,135 2 0 181
AAACGCATCCCACTGTGAGCAAATGTCTGTGGAACTCAAGGTCTTTAAGAATACTGAAGC
ATCTCTGCCTCATGTCTCCTACTTGCAAATCTCAGCTCTCTCCACCACGGGGTTACTAGT
GTGCCCTGACCTGAAAGAATTCATCTCCAGCAACGCTGATGGAAAGATACAGTGGTATAA
G
INTRON 4 - 5 40,112,136 40,115,023 2,888
GTAATGCTTTCAAAATGCATATGCC..........ACTCTCAGATGCATCTCCCCTCTAG
5 EXON 5 40,115,024 40,115,198 0 1 175
GGCGCCATACTCTTGGATAAAGGCAATAAGGAATTTCTGAGTGCAGGAGACCCCACACAC
CTATTGATATCCAACACGTCCATGGACGATGCAGGCTATTACAGATGTGTTATGACATTT
ACCTACAATGGCCAGGAATACAACATCACTAGGAATATTGAACTCCGGGTCAAAG
INTRON 5 - 6 40,115,199 40,117,954 2,756
GTAAATACATACCACCGAGGTACCT..........TCTCTTTTCTGTTCTATCTTCTCAG
6 EXON 6 40,117,955 40,118,017 1 1 63
GAACAACCACGGAACCCATCCCTGTGATCATTTCTCCCCTGGAGACAATACCAGCATCAT
TGG
INTRON 6 - 7 40,118,018 40,120,908 2,891
GTAAGGATCTACAAGAATTGTGTGG..........GTGTGTTCTATCTTGCTGTCCCCAG
7 EXON 7 40,120,909 40,121,044 1 2 136
GGTCAAGACTGATAGTCCCGTGCAAAGTGTTTCTGGGAACTGGTACATCTTCCAACACCA
TTGTGTGGTGGTTGGCTAACAGCACGTTTATCTCGGCTGCTTACCCAAGAGGCCGTGTGA
CCGAGGGGCTACACCA
INTRON 7 - 8 40,121,045 40,123,121 2,077
GTAAGTGGGTGAGGGTCTCTGCTGT..........CTCAATAGAGTGTTTTCTCACCCAG
8 EXON 8 40,123,122 40,123,264 2 1 143
CCAGTACTCAGAGAATGATGAAAACTATGTGGAAGTGTCGCTGATTTTTGATCCAGTCAC
AAGGGAGGATCTGCATACAGATTTTAAATGTGTTGCCTCGAATCCACGGAGTTCTCAGTC
ACTCCATACCACAGTCAAAGAAG
INTRON 8 - 9 40,123,265 40,125,040 1,776
GTATGTATGGGGGGTGGGGGGAACT..........CTCACACCCTCTCTTCCCTCTACAG
9 EXON 9 40,125,041 40,125,231 1 - 191
TCTCTTCCACGTTCTCCTGGAGCATTGCGCTGGCACCTCTGTCTCTGATCATCTTGGTTG
TGGGGGCAATATGGATGCGCAGACGGTGTAAACGCAGGGCTGGAAAGACATATGGACTGA
CCAAGCTACGGACTGACAACCAGAACTTCCCTTCCAGCCCAAACTAAATAAAGGAAATGA
AATAATATGAG
3' upstream sequence
AGTGACCCATGTGGTTTCTTATGGGGGTGGGGTGGGGTAGGGTGGGGTGGGGTGGCTGTA
CTGCTTGAAAGGTTCTGTGTTTTGCTGGGTTGTTTAGCAAAGCTCTTCATTTGTAGCTGA
AGTTGGAATCTTATGCTCTACTCTTCTCTGAAAATCAGTTCTGGGAGAAAATGTGGAGGG
GAGTATGAACAACACTGCCCTTTGTGACCAATGTATGAGAACAAGCCATAGCAGCCATAG
AGGTCTTGTGGAGCAGCTGTCCTCTGGGTCTGATCCTTACAGTCACGTCCCTCCTCATCC
TTCCCAAGCAACCACGAAAAAGAGCACTGTTAGTCTTGAGTAAGACTGCTAACCTCCAGA
GCACTTTAAAAGCTCATAACTCTTTCATTTAAAGTATGTTAATTTATATAATTAGTCTGT
GTAGATAGGCTGATGGGAGACACTGGAGGGACAAAGATGGGTAAGACATAATGTGCCTTT
AGAAAGGGTGATTTTCATTTTGATTCTGGAAGGATGATTAAGACATACTGAACCAGAAGA
ATCAGCAAGGGTTAGTGATTCAAAAATTAGCAATCGCCTTTTTGTAGCATATGGCCACCA
TCACAAGAATCTTTAACTGGTCAAAACTTCAGAGAACAATCAGCTATGGGGTGCTGCCCG
TCCCCAACTGATGCATCTACAACACAACTTCTCCATCTAGGGCTCAAGGGCCATCTTAGA
GCGATTGTGAAGATCAAAGAGCCAGAAGTCCAGGGCATCTGCTGCAAGACATGACAAGGA
ATTGCTCGTACAAAATATCAGCAATGTGGCCTTCTAAACAAGGCCCCAAACATTACAACA
TCAGTTGATCAGGGAAATTTCACAAATCCCCATCCCTAGATAAAGGTCTACAGCTAACTA
ATGGCTGTGGAGGGAGGGAGAATCAGTCTTCTGCAGGGGTGAGCCTCCATTAGCTTACTC
AATTTCAAGTGGTCAGCTCTGAAAACACACACATGCGCAC..........

Sequence Detail Report

Gene Symbol (Gene ID) Il1r2 (ENSMUSG00000026073)
Transcript ID ENSMUST00000027243
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 411 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information