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Target CDS Information

Gene Symbol (Gene ID) Asnsd1 (ENSMUSG00000026095)
Cross Reference
CCDS CCDS14954.1
EMBL AK031295, AK034746, AK049194, ...show all
Fantom 4930463K18, 6030403M10, 9430031J04, ...show all
GO GO:0003674, GO:0004066, GO:0005575, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name Asnsd1-001
OTTP OTTMUSP00000024130
OTTT OTTMUST00000051332
protein_id AAH13617.1, BAC27337.1, BAC28818.1, ...show all
RefSeq_mRNA NM_133728.3
RefSeq_peptide NP_598489
UCSC uc007azg.2
UniParc UPI00000227D0
Uniprot/SWISSPROT Q8BFS9
Vega_transcript Asnsd1-001, OTTMUST00000051332
Vega_translation 179288, OTTMUSP00000024130
Definition protein_id:ENSMUSP00000027264
translation:
MCGICCSVSFSIEHFSKELKEDLLHNLRRRGPNSSRQLLKSAVNYQCLFSGHVLHLRGVL
TIQPVEDEHGNVFLWNGEVFNGVKVEAEDNDTQVMFNSLSACKNESEILLLFSKVQGPWS
FIYYQASSHHLWFGRDFFGRRSLLWQFSNLGKSFCLSSVGTQVYGVADQWQEVPASGIFQ
IDLNSAAVSRSVILKLYPWRYISKEDIAEECGNDLTQTPAGLPEFVSVVINEANLYLSKP
VVPLNKKLPESPLEIQCRNSSSTSGTRETLEVFLTDEHTKKIVQQFIAILNVSVKRRILC
LAREENLASKEVLKTCSSKANIAILFSGGVDSMVIAALADRHIPLDEPIDLLNVAFVPKQ
KTGLPIPNIERKQQNHHEIPSEESSQSPAADEGPGEAEVPDRVTGKAGLKELQSVNPSRT
WNFVEINVSLEELQKLRRARICHLVQPLDTVLDDSIGCAVWFASRGIGWLVTQDAVRSYK
SSAKVILTGIGADEQLAGYSRHRARFQSLGLEGLNEEIAMELGRISSRNLGRDDRVIGDH
GKEARFPFLDENVVSFLNSLPVWEKVDLTLPRGVGEKLILRLAAMELGLPASALLPKRAI
QFGSRIAKLEKSNEKASDKCGRLQILP

Chromosome 1
Length
Position(start - end)
3,735
53,344,730 - 53,348,466
Orient to Chromosome minus
Link Location : (1:53344730-53348466)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Asnsd1 (ENSMUSG00000026095)
Transcript ID ENSMUST00000027264
Reports
substitution
cSNPs16
Insertion14
Deletion14
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num8
non-synonymous num8
synonymous substitutions 53346669 (p.Asn515Asn), 53346674 (p.Leu514Leu), 53347297 (p.Ala390Ala), 53347522 (p.Thr315Thr), 53348332 (p.Tyr45Tyr), 53348353 (p.Leu38Leu), 53348368 (p.Asn33Asn), 53348401 (p.Asp22Asp),
non-synonymous substitutions 53347220 (p.Asn416Thr), 53347305 (p.Pro388Thr), 53347851 (p.Asp206Asn), 53347976 (p.Tyr164Ser), 53347986 (p.Thr161Ala), 53348211 (p.Glu86Lys), 53348360 (p.Arg36Lys), 53348433 (p.Ile12Val),
B6 transcript
(ENSMUST00000027264)
MCGICCSVSFSIEHFSKELKEDLLHNLRRRGPNSSRQLLKSAVNYQCLFSGHVLHLRGVL
TIQPVEDEHGNVFLWNGEVFNGVKVEAEDNDTQVMFNSLSACKNESEILLLFSKVQGPWS
FIYYQASSHHLWFGRDFFGRRSLLWQFSNLGKSFCLSSVGTQVYGVADQWQEVPASGIFQ
IDLNSAAVSRSVILKLYPWRYISKEDIAEECGNDLTQTPAGLPEFVSVVINEANLYLSKP
VVPLNKKLPESPLEIQCRNSSSTSGTRETLEVFLTDEHTKKIVQQFIAILNVSVKRRILC
LAREENLASKEVLKTCSSKANIAILFSGGVDSMVIAALADRHIPLDEPIDLLNVAFVPKQ
KTGLPIPNIERKQQNHHEIPSEESSQSPAADEGPGEAEVPDRVTGKAGLKELQSVNPSRT
WNFVEINVSLEELQKLRRARICHLVQPLDTVLDDSIGCAVWFASRGIGWLVTQDAVRSYK
SSAKVILTGIGADEQLAGYSRHRARFQSLGLEGLNEEIAMELGRISSRNLGRDDRVIGDH
GKEARFPFLDENVVSFLNSLPVWEKVDLTLPRGVGEKLILRLAAMELGLPASALLPKRAI
QFGSRIAKLEKSNEKASDKCGRLQILP*
MSMv4 transcript
MCGICCSVSFSVEHFSKELKEDLLHNLRRRGPNSSKQLLKSAVNYQCLFSGHVLHLRGVL
TIQPVEDEHGNVFLWNGEVFNGVKVKAEDNDTQVMFNSLSACKNESEILLLFSKVQGPWS
FIYYQASSHHLWFGRDFFGRRSLLWQFSNLGKSFCLSSVGAQVSGVADQWQEVPASGIFQ
IDLNSAAVSRSVILKLYPWRYISKENIAEECGNDLTQTPAGLPEFVSVVINEANLYLSKP
VVPLNKKLPESPLEIQCRNSSSTSGTRETLEVFLTDEHTKKIVQQFIAILNVSVKRRILC
LAREENLASKEVLKTCSSKANIAILFSGGVDSMVIAALADRHIPLDEPIDLLNVAFVPKQ
KTGLPIPNIERKQQNHHEIPSEESSQSTAADEGPGEAEVPDRVTGKAGLKELQSVTPSRT
WNFVEINVSLEELQKLRRARICHLVQPLDTVLDDSIGCAVWFASRGIGWLVTQDAVRSYK
SSAKVILTGIGADEQLAGYSRHRARFQSLGLEGLNEEIAMELGRISSRNLGRDDRVIGDH
GKEARFPFLDENVVSFLNSLPVWEKVDLTLPRGVGEKLILRLAAMELGLPASALLPKRAI
QFGSRIAKLEKSNEKASDKCGRLQILP*
homology98.73 (628 / 628)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Asnsd1 (ENSMUSG00000026095)
Transcript ID ENSMUST00000027264
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TTTCTCCATCTATGGTAATTGAGGGTGTTGCTGTAATAGTAGTCAGGGCT
GCTATTTGTGTTCTCTTAGGGTCTGTATGGGATCTGCCCAGGATCTTCTAGTTTTCATAG
TCTCTGCTGAGAAGTCTGGTGTAATTCTGATAGGTATGACTTTGCATGTTACTTCACCCT
TTTTCCTTACTGCTTTTAATATTCTTTTGTTTGTTTGTTTGTTTAGTGCATTTGGTGTTT
TGATTATTATGTGATGGGCGGAATTTCTTTTCTGGTCCAATTTATTTGGAGTTCTGTAGG
CTTCTTGTATGTTCGTGGGCATCAAATTCTTTAGGTTAGGAAAGTTTTCTTGTTTAATTT
TGTTGAGGATATTTACTGACCATTTAAGTTGGGAATCTTCACTCTCTTCTATACCTGTTA
TCCTTAGATTTGGTCTTGTCATTGTGTCCTGGATTTCCTGGATATTTTGGGTTAGGAGCT
TTTTGCAATTTGCATTTTCCTTGACTGTTGTTTCAATGTTTTCTATGGTATCCTCTGCAC
CTGAGATCTGCATCTGGTATGTCTTAAGACAGAGACAGTGAACTCATCATATACATAAAA
TAAGTAAATCTGAAGAAGAAGAGGAGGAGGGGAGGGGAGGAGGAGGAGGAGAAGGAGGAG
GAGGAGGGGGAGGAGGGAAGGGACGAGAAGAAGAGGAAGAGAAGGAGGAGGAGGAAGAGG
AAGGGGAGGGGAGAGGAGGGGGAAGGGGATGAGAAGAAAAAGAAGAAGAGGAAGAAGGAG
GGGGAGGAGGAGGAAGGGGGAGGGGGAGGAGGAGAAGAAAACCAAATTTAAGAGTATTAA
ATTATAGTGATTTATTTTTACATAGGATCCACTAGGGGGCGATACAGACCATTCATAGAT
TCTGCAGCCAAGCCACACCTACATTTAGCAGAAAACCAGTTTGCAGTGGAGCACAACTCT
TAATTCGACTTTTCACAACCCACTCCGCGCGCGCTTGCCACTGCGCAGGC
1 EXON 1 53,352,530 53,352,752 - - 223
GTGAGTGTGCGCACTCCATTGGTCGGGGTGCCGGAAGGGGCGGATTCCTGAGTGGAACCC
AGGCTTCCTGCCGGGGCTGCTGGCTGCCGTTCCTTCCTCAGTCGCGGTTCTTGGCGTGCG
GCGCGGCTAGGCGATGCCCAGCAGTGGGGTGCACGCCGATGGCCGCGCCGCGCCGGGGCC
CCCACACACATCGACTGCGCACGCCGAGTCCCTTAGCAGCAAG
INTRON 1 - 2 53,350,934 53,352,529 1,596
GTGCCGTGGGACGCCGGGGAAGGGT..........TAGATTTTTTTCTTTACTTTAATAG
2 EXON 2 53,350,880 53,350,933 - - 54
ATTAAAGAACAGAAAATTATTGTGGATGAACTTTCTAATCTGAAGAAGAATCGG
INTRON 2 - 3 53,350,063 53,350,879 817
GTGAGTTGCTGTGGAAATCTGAATA..........CTGATCTTGTCAATTTCGTTTGCAG
3 EXON 3 53,349,987 53,350,062 - - 76
AAAGTATACAAGCAGCAACAGAATAGCAACATATTCTTTCTTGAAGATCGAACAAAAATC
TTTTCTGAAAGCAAAA
INTRON 3 - 4 53,348,559 53,349,986 1,428
GTGAGTGGTGGTCGTCTTGGTTGTT..........ATTTTTTCTCACTTCCTCCTAACAG
4 EXON 4 53,347,015 53,348,558 - 0 1,544
ATACATTAGACGAACTAAAAAAAGAATACCAAGCATTAGAAACCTCCGAGACAACCAAAG
TCAAGACACAGTCAACCTGACTTCACATAACCATGTGTGGCATTTGCTGTTCTGTAAGCT
TCTCTGTTGAACACTTCAGTAAAGAGTTAAAAGAGGACTTGCTGCATAATCTTAGACGGC
GGGGCCCCAATAGCAGCAAGCAGTTATTAAAATCTGCTGTTAACTACCAGTGTTTATTTT
CTGGTCATGTTCTTCATTTAAGAGGTGTTTTGACTATCCAACCTGTAGAAGATGAACATG
GCAATGTGTTCTTATGGAATGGAGAAGTTTTTAATGGAGTAAAGGTTAAAGCAGAAGATA
ATGACACCCAGGTTATGTTCAATAGCCTTTCTGCCTGTAAGAATGAGTCTGAAATTTTGC
TGCTCTTCTCTAAAGTGCAAGGTCCATGGTCGTTTATCTATTATCAGGCCTCTAGCCATC
ACTTATGGTTTGGTAGGGACTTTTTTGGTCGGCGTAGCTTGCTTTGGCAGTTTAGTAATC
TGGGCAAGAGTTTCTGCCTTTCGTCAGTTGGTGCCCAGGTATCTGGAGTTGCAGACCAGT
GGCAAGAAGTTCCAGCATCTGGAATTTTCCAGATTGATCTCAATTCTGCTGCTGTTTCCA
GATCTGTGATCTTAAAATTATATCCTTGGAGATACATTTCTAAGGAGAATATTGCCGAAG
AATGTGGTAATGACCTGACTCAGACTCCAGCAGGATTGCCAGAGTTTGTATCAGTGGTAA
TAAATGAAGCCAACCTGTACCTCTCAAAACCTGTCGTTCCCTTAAATAAGAAGCTGCCTG
AGAGTCCATTGGAAATCCAATGTAGAAACAGTTCTAGCACTTCAGGTACAAGAGAGACAC
TTGAGGTATTTCTTACAGATGAACACACAAAAAAAATAGTTCAGCAGTTCATTGCCATCC
TCAATGTTTCAGTCAAGAGACGCATCTTATGTTTAGCTAGGGAAGAAAACCTGGCATCAA
AGGAAGTTTTAAAAACCTGCAGTTCGAAAGCAAACATTGCGATCCTGTTTTCTGGAGGTG
TTGATTCTATGGTGATTGCAGCCCTTGCTGATCGTCATATTCCTTTAGATGAGCCAATTG
ATCTTCTGAATGTGGCTTTTGTGCCTAAACAAAAAACAGGGCTACCTATTCCTAACATAG
AAAGAAAACAGCAGAACCACCATGAGATCCCTTCTGAAGAGTCCTCTCAGAGTACTGCTG
CGGATGAGGGGCCAGGTGAGGCTGAGGTACCAGACCGAGTCACAGGAAAAGCAGGACTAA
AGGAACTACAGTCTGTCACCCCTTCTCGAACTTGGAATTTTGTGGAAATAAATGTTTCTC
TTGAAGAACTACAAAAACTAAGAAGAGCTCGAATATGTCACTTAGTTCAGCCATTGGACA
CAGTTCTGGATGATAGCATTGGCTGTGCTGTGTGGTTTGCTTCTAGAGGAATCGGTTGGT
TGGTGACCCAAGATGCTGTGAGATCTTACAAGAGCAGTGCAAAG
INTRON 4 - 5 53,346,762 53,347,014 253
GTATGATCCAGGACTGTTGCTCAGA..........TCTGGCTTTCTTTACTCTTCTGTAG
5 EXON 5 53,346,580 53,346,761 0 2 182
GTGATTCTTACTGGGATTGGTGCAGATGAGCAGTTGGCAGGTTATTCCCGTCATCGTGCC
CGCTTTCAGTCTCTTGGCCTAGAAGGATTGAATGAGGAAATAGCAATGGAATTGGGTCGC
ATTTCTTCTAGAAACCTTGGTCGTGATGACAGAGTTATTGGTGATCATGGAAAGGAAGCA
AG
INTRON 5 - 6 53,344,980 53,346,579 1,600
GTAACTCATTACTGAATACTTTTTA..........ATTTTTTAATTTTGATCAATTTTAG
6 EXON 6 53,344,617 53,344,979 2 - 363
ATTTCCTTTCCTGGATGAAAATGTTGTGTCTTTCCTAAATTCTCTGCCAGTTTGGGAAAA
GGTAGACCTCACTCTGCCCCGTGGAGTTGGTGAGAAGCTTATTTTACGCCTTGCAGCTAT
GGAACTTGGTCTCCCAGCCTCTGCCCTTCTGCCAAAACGAGCCATACAATTTGGATCTAG
AATTGCAAAACTGGAAAAATCTAATGAGAAGGCATCTGATAAGTGTGGAAGGCTCCAAAT
CCTACCTTAGAAAACCTCTCTCAAAATTACATCATAATAAGATTATTCTATCCTGTACTT
TGTGACAGTTACCTCAAAATAAACAGCTGCTGCCTTTCTGTGGGGTGTAGTAGTTTCACA
TTT
3' upstream sequence
CATTGTGTTAATTTTTACCTTTCTCATCAAAGCTCCATTTGAACAGACAGGGGTTTCATA
GATGGTCTCAGCATTGAGATCATTTGAAGAAAGGCTAGAATGTACAGGGTTACAGTTGGC
CTTTTTAGAAGCTTCACCTGAGAAGTGGGGTGAAGAGGGCTGGAGATGCAGTATTATCCA
GCTCTTCGAAGACTTGATGAGTTCCAGTTTGCAACTCAGGAAAGGGCTTTTAGGACCAAA
TTGCACAGAGGGCATGCAAGGTCATTTGCCCACCCTGTGCATTTCTTCTATCTGGTTGTT
CTTGTGTTAAATCCTTTTGAGTGTAAATTCCTGAGTTCTATAAGCACACTGTTGACACTA
GGGAGAGGGGTTGTGAGCGTTGAGTTCATAAATGGCTGGAGAGAAGGAGCTGAGGTCCTG
ACTTGAACTAAGCTCTTGAAGTGCTAGTCTTTTAGGACTGAGGTTTTAAACCTGAGACTT
GACACTGACTCCTAATAGACAGTGTCAAGATTGAGTTAGATTATAGAATACCCAGGTAAT
GTTCAGAGAGATACAGGGGTAGAGGGACCAATATCAGTGTAAGACCATGGGCAGGTTGCT
TCCCTAAGGTCTTCATAGCAGCATACCTACACATAATTCAATTGCTATTATTGCCAGGAA
CCTTGATTTGGGCTTTGAAGATTCTACAACTAAAGTTTTGAGAAGCTAAGAAATTTGAGA
TTTATATTTGTAAGACTCAATTCTCTTTCACAGCTCATTTTCCAACTTAAACTTTTAAGA
CCCTTTTTAAACATCCCCCCCCCCCCAAATCTACTTGTCCCATTTTAGCCATTCACAGAA
AGATTAGTTAGCCCAAGACCTATGCCTTCTTCACAGCATCAGAACTCTTTGGACAAATTT
ATTTCTCAAAGTTGTGAGTGAAAGAATCCAAGAGCAAAGATGCCAGCAGAATTAGTATTA
GAATTATAACCTGCTGTGTATTTGCATCAGAACTTCCAGC..........

Sequence Detail Report

Gene Symbol (Gene ID) Asnsd1 (ENSMUSG00000026095)
Transcript ID ENSMUST00000027264
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 628 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information