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Target CDS Information

Gene Symbol (Gene ID) Plekhb2 (ENSMUSG00000026123)
Cross Reference
CCDS CCDS14874.1
EMBL AF189817, AK039771, AK082118, ...show all
Fantom A330105O19, C230009C22, G530024F20, ...show all
GO GO:0003674, GO:0005575, GO:0008150, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name Plekhb2-001
OTTP OTTMUSP00000037926
OTTT OTTMUST00000073322
PDB 2DHI
protein_id AAF01332.1, AAH57994.1, BAC30448.1, ...show all
RefSeq_mRNA NM_145516.2
RefSeq_mRNA_predicted XM_006495898, XM_011238479.1
RefSeq_peptide NP_663491
RefSeq_peptide_predicted XP_006495961.1, XP_011236781.1
UCSC uc007apl.1
UniParc UPI00000227E8
Uniprot/SWISSPROT Q9QZC7
Vega_transcript OTTMUST00000073322, Plekhb2-001
Vega_translation 178937, OTTMUSP00000037926
Definition protein_id:ENSMUSP00000027297
translation:
MAFVKSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQTRQSIEDKVHMPVDCINIRTGH
ECRDIQPPDGKPRDCLLQIVCRDGKTISLCAESTDDCLAWKFTLQDSRTNTAYVGSAILS
EETAVAASPPPYAAYATPTPEVYGYGPYSGAYPAGTQVVYAANGQAYAVPYQYPYAGVYG
QQPANQVIIRERYRDNDSDLALGMLAGAATGMALGSLFWVF

Chromosome 1
Length
Position(start - end)
15,165
34,861,881 - 34,877,047
Orient to Chromosome plus
Link Location : (1:34861881-34877047)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Plekhb2 (ENSMUSG00000026123)
Transcript ID ENSMUST00000027297
Reports
substitution
cSNPs4
Insertion23
Deletion39
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num4
non-synonymous num0
synonymous substitutions 34863118 (p.Pro50Pro), 34863139 (p.Arg57Arg), 34866185 (p.Ala126Ala), 34866203 (p.Tyr132Tyr),
non-synonymous substitutions
B6 transcript
(ENSMUST00000027297)
MAFVKSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQTRQSIEDKVHMPVDCINIRTGH
ECRDIQPPDGKPRDCLLQIVCRDGKTISLCAESTDDCLAWKFTLQDSRTNTAYVGSAILS
EETAVAASPPPYAAYATPTPEVYGYGPYSGAYPAGTQVVYAANGQAYAVPYQYPYAGVYG
QQPANQVIIRERYRDNDSDLALGMLAGAATGMALGSLFWVF*
MSMv4 transcript
MAFVKSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQTRQSIEDKVHMPVDCINIRTGH
ECRDIQPPDGKPRDCLLQIVCRDGKTISLCAESTDDCLAWKFTLQDSRTNTAYVGSAILS
EETAVAASPPPYAAYATPTPEVYGYGPYSGAYPAGTQVVYAANGQAYAVPYQYPYAGVYG
QQPANQVIIRERYRDNDSDLALGMLAGAATGMALGSLFWVF*
homology100.00 (222 / 222)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Plekhb2 (ENSMUSG00000026123)
Transcript ID ENSMUST00000027297
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........ACTGTTTCAGGTGTAAACACGGTGTGTGTTTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGGCACATGCATAAAGCTATAGGATGTATGACCCACCAACTCAAAGCTACCT
AACAGCCCATCTGTCAATCAGGGCAAAGGGTCTACCTAATTTCTATGCAGGGAATCTGCT
CCTCACTCTACTTAAACTCATAACGTTCCAAAAGGTCATGGGGGTCTTGAGTCTTATGCT
TGCTCAGGCCATTCCCATTCTGGGGAGTGTATTCCATGCATTTTCTTTGTAAATAAATGT
ACCCTTTGACAACCTTTATTCTGTGTTGTGCAAGTCATTGTTTGAGACACTAAGAACCTA
GAAAAAGCCTGGGATACACAAGGCACTATAATTAAAAGAGTATTTTTTTTTCCTTAGACT
GACCTTGAGCTCACTACCTAGCTAAAGATAATCTTGGCCTTCCTTTATATCTTCTTACCA
CATCTTTCAAATGCTGAGATTACAGCTGTGTACTGCCATGTTATGTAGCCCAAGCTGCCC
TCAAATTTATTATCCTCCTGACTAAGCCTCCCCAGTACTGAGATTACAGTCCTACTAACA
CCCCCCGGCTCCTTCCTCATTTATTTTTTTATCCTTATATTTTATATTCTAAGCTATAAC
ATTTCTATGTGAGTTATTGCTAAGACTTCCAATTTTGTTCCTTGATTGCTGTTTCAGTTT
TGACATCTCCATCTTCCTGGTTTTTAAGCCTGCAGGTCTTCATTTCTGGCTCTGAGAGGT
CCCAGGTTCAGTTTGCCCTTGGCTTGTCCCCATTCCCGCTGTCACGCTTTTCTCTACGAA
GCTCTGTGTTTAGAGGCCAAGATCAAGAAACTTAGAACCACCTTTGAGCAGATAACAGCC
CAGGTTGAGAGCAACGCCTTGGCTTCGGCCCTGCACCCGGGTGGCACCTGCCTTGCGCGC
ATGCGCATGGCTCGAGGCGGTGACGCAGGACCAGGACTCGCGCGTCCAGC
1 EXON 1 34,849,992 34,850,063 - - 72
GGAGAAGCAGGAGAAGCCGGCGACCTTGCGCTCTCAGCCTGATCCCTGTCTTGGCGGCCT
GAACATTCGCAG
INTRON 1 - 2 34,850,064 34,861,872 11,809
GTGACTGTGCCCGCGGAGCCCCCCT..........ACCCTGTCTGCTCTCTCTCCTGCAG
2 EXON 2 34,861,873 34,861,917 - 1 45
CTGGAGAGATGGCGTTCGTGAAGAGTGGATGGTTACTTCGGCAGA
INTRON 2 - 3 34,861,918 34,863,005 1,088
GTGAGTAGAGACATCTGAGAACCCT..........CCAACTCTCTCTGTGTGCCCCCCAG
3 EXON 3 34,863,006 34,863,158 1 1 153
GCACCATTCTGAAACGCTGGAAGAAGAATTGGTTCGACCTGTGGTCAGACGGTCACCTGA
TCTACTACGATGATCAGACTCGGCAGAGCATAGAGGATAAGGTCCACATGCCTGTGGACT
GCATCAATATCCGTACGGGGCATGAGTGCCGGG
INTRON 3 - 4 34,863,159 34,863,470 312
GTAAGCTGTGCCCAGGACCACCACC..........CCTCCGTTCTGCCTCTCTCTCCTAG
4 EXON 4 34,863,471 34,863,573 1 2 103
ACATCCAGCCTCCAGATGGGAAGCCCAGAGACTGTCTGCTGCAGATCGTTTGCCGAGACG
GGAAGACCATCAGTCTCTGTGCAGAGAGCACAGACGATTGCCT
INTRON 4 - 5 34,863,574 34,864,472 899
GTGAGTGCTCATTTGATTATGTGTT..........TACCCTGTTTTTTCATTTTTTCCAG
5 EXON 5 34,864,473 34,864,512 2 0 40
GGCATGGAAGTTTACACTGCAGGATTCCAGAACAAACACA
INTRON 5 - 6 34,864,513 34,866,140 1,628
GTAAGCTGCCCATGGGTATTCCAGC..........GTCCTAGCTCTCTTGTCTCCCACAG
6 EXON 6 34,866,141 34,866,230 0 0 90
GCTTACGTTGGTTCAGCAATCCTGTCTGAAGAGACTGCAGTGGCTGCGTCCCCGCCTCCC
TATGCAGCCTATGCTACACCAACCCCTGAG
INTRON 6 - 7 34,866,231 34,869,299 3,069
GTAGGGAGGTTTGAGCAGAGCATAC..........CTCATGGGACTTTGTCTCCTTCCAG
7 EXON 7 34,869,300 34,869,405 0 1 106
GTCTACGGCTATGGTCCATACAGCGGCGCATACCCCGCAGGAACTCAAGTTGTCTATGCC
GCCAACGGGCAGGCATATGCAGTGCCATACCAGTACCCGTATGCAG
INTRON 7 - 8 34,869,406 34,876,910 7,505
GTAATGCACGCTGGCTGCCGCTCCC..........AGATCTCTCTCCTCTTGGTTTTTAG
8 EXON 8 34,876,911 34,879,580 1 - 2,670
GAGTTTATGGACAACAGCCTGCCAACCAAGTCATCATCCGCGAGCGGTACCGAGACAATG
ACAGTGACCTGGCTCTGGGCATGCTCGCCGGGGCAGCCACCGGCATGGCCCTGGGCTCTC
TGTTCTGGGTCTTCTAGAGCCTTCAACATTTTCTGTGCATAGCTTCTGTTAGTCCTGTGT
GCAGTAATTTGATTTGCAGGGCATTTCTGTTTGTGACAAGTGTCTTTCATAATAATTTAA
ATAGTTCTTTTGAAGGTGGTAATCTAATAATTGTGACTGACCTGCATGGTACCACAAAGA
AAGCCCGAAGTATGCTGTGAGCGAGAGCCTGAGTCCTTCCGGGTACTAGCTTGCACCAAG
TCTTTCTTAGGGACTTTTGGATGGCTTTATGTAAACACACCCAGTTAAATGGGCAATTTC
CGTCCAGTTAGGTGCAGTGTTGAATTAAGGGATGGCTTTCCTTGCTATGCCAATACTAAT
ACTGCTGATGGAGGAAGATGTGTGCAAGTGTGGTGAGGAGAGACACAGCTTCTTTAACTG
TGGATTCTCTTCTAGACCCCTGCTGCGTGTTACCCTAGGAGCTGTGGGCTGGTGGCTCCT
GCAAGACTATGGTGTGAGGACCCTGTAACGTACCTCTTGGAGCACTTAGGTACCCCTTGA
AGCTCCTAGGTACCACCAGCAGGATTGGCTGCTCAGGATGCAGAGGGCCACCCCCTCCCT
TTAAAAATTACGCTCCAGTAATCTGCCCAGTTTTATTTTCTTGTTATTCTTCTGTTTGCT
TTTCCTGGGGATGATTGGCATTAGTCTGGAGTTAGGAATTGATTCGAGTGCCGGTGGGTG
GAGGCATGCAGGGAGCTGCCCAGCAACCTGCTCTCAGTGTTTGTTTTAGGTATATTGATT
GCCAGCTCAGGCTGCAGAGAGCCTATAGAGACTATTTTTCTACTTGTAAAGAAAGTATGG
TGAGGGGAATTGAGGAGAGCCTTGTTTGAATGTTCCTGCCTCAGGCCTCCTGGGGCCCAC
ACTGCGTGGTCCTGGAGAGGCTTTTCCTCAGCAGTGGAAGGGAGGCCCCGTGGCTGTCCA
GAGTCTCAGGTTTTGAGTGAGAAATGGGATTGGGTAGAGCATCTCAGGGATTTGTTCTAA
TCCCTCATGTTATGGGGATCCAGCCGTGTTCTCAGTCCAGACCCGCTCACCTCAGAAGAG
CTTAAAACATTTCTGGTCCCCAAATGTGTGACACTCTGAGAAGCTCACAATCTGGCTTTT
TAACGAAAATTTGTATTTCTAATATTAGAGAATACATGTTCCACGCATTTAAAATTTATG
TTCTTTCATGTTTTAAAGCTCCCAAATCCAGCTTTGTGACTGGCATATTTTAGTTTCAAA
CAGTACCCCGGCACAAAGGTGGGATGGCACAGTGAAGGCCCCCCACCCTCTACTTTGCAT
AGTCTTGTTTCTCCAGGGTGCTCCCAGGAAGCATTCATTCTGACTTTGCTCAGCCCAGTG
CATGCGTGCTGCCTTGCCGCCGTGCTGCTGGGTAGCTCTTTCTTGGTCAGATCAAGTCTT
CAACAGATCTCCATGTGAGACAGTTGCCAAGTAGATGAGGTGGTGCCCATAGTGCTTTCT
CGATACTCCTTGGGGACCTGTTGACACCTGCCCATTTCCAGCTGACGTTTGTTTCTCTGT
CATCTCTGATAGATGGGATATGTGACAACATGGTACGGATGCCGTACAGTGTCGCTTTAA
TAAGCATGATGCTGATTTTACATCCTGTGCTGTAAGACTGCCATTTGCTCACAGTGTCAC
CATTGCTAAAGCTCTGTGCTTTACTTACAAAACACTAAAACCAGTGGTTAGTGTTTCACA
GTGATTTTAATTTTAGAGTTAGTTACTGGCATTCCTAAAGCCATAGAGTACTGAGTCACA
TCCCTGAAGTACTTTTGAAACAGAATTATCTCCTACTGTCCCATGGGTGTGCCCTGCCTG
TCTCCTGGCCCCAATGGGGCTAGCTGTACCAGGCAGCCATAGTTGAGCCTGATCATTCTT
GTCACCAGTTTGACTTGATTATATACGCAGAATGGAATACATTCTTGGGCATCTCAGTTC
CTCAGCCCTGATCCTCATAGACGCCACCCTTTTGATGGCTTTCGCGGCGTCACTTGTACC
TCAGTGAGTCCTGCGATTCTTGAGTTTGAGGGAACGACTTGTCCAGCATTGAGGAACATG
TCTCCTCCACTGAGACTTAAATGATGATGCAGGGCTGGAAGAGGCTGGCTGCTGACACTG
CGTCGTGGCTGATGTCATTGCTCTCCTAGTTCTTTGAGTTAAGAACCTTTCATATGGAAG
GCCTGAGGCTCCCTCAGATCGTCCCTTGCCAAGAAGGCCCGGCTTAGGTCATTAGTGCCC
ACAGTAGCCTTCTGGAGTGTAGCAAGTTCCTGCGTTTGAGACAGAATGGTTCAGATTTAT
TTTCTACATCTGTTGTTGACCCCATGCACCCTCTCATTTTGCCTTCCAGTCTACGTAGAT
GAAAGATGAAAGGCAGAGGATGCAGACAGTCTTCTATGTGATTGCTTCTGTTATTCTGTT
GCATCTACCGAGCCCGTTTCCTCCCTGTCTGTGCATACAGTATGTTTATAAGTGAACTTG
TTAAAATATTAAATGATCACTAACCTTAAA
3' upstream sequence
CCGTGTCTCATTGTGACTTCTGTCGTATGTTTAAATTATTTTGAGGTGGCTGGAGCAGTA
GTTAAGTTGCCTGTCACAAAAGCATGAGGATCCGAGATCAGATCCTTGGCACCCAAATGG
AAGCTAGATGTGGCTACAGACATCTGTAGTCGTAGAACTTGGAGCTTGGAGAAGGGCCAG
CCCCCAGAGTGCTAGTCTTCTAGCCAATCAGTGAGCTCTGGATCCATCAACAGACTCTTG
TCTCTAAAGATAAGGCGGAGGGTGATAGAGGAAGAGGCCTGACATAAGCCTCTGGTCTTC
AAGCAAGGGCACATGCCCACTCACGTAAATCACCTTGAATGAACTGAACCTAGGGCTGCA
TGCCTCTGAGCCCCGTAGAGGTGGAAGCATGGGGCTGCATGCCTCTAAGCCCCGTGGAGG
TGGAAGCATGGGGCTGCATGCCTCTGAGCCCCGTGGAGGTGGAAGCATGGGGCTGCATGC
CTCTGAGCCCTGTGGAGGAGGAAGCATGGGGCTGCATGCCTCTGAGCCCTGTGGAGGAGG
AAGCATGGGGCTGCATGCCTCTGAGCCCTGTGGAGGAGGAAGCATGGGGCTGCATGCCTC
TGAGCCCTGTGGAGGTGGAAGCATGGGGCTGCATGCCTCTGAGCCCTGTGGAGGAGGAAG
CATGGGGCTGCATGCCTCTGAGCCCCGTGGAGGTGGAAGCATGGGGCCGCATGCCTCTGA
GCCCCATGGAGGTGGAAGCATGGGGCTTCATGCCTCTGAGCCCCGTGGAGGTGGAAGCAT
GGGGCCGCATGCCTCTGAGCCCCGTGGAGGTGGAAGCATGGGGCTGCATGCCTCTGAGCC
CCGTGGAGGTGGAAGCATGGGGCTGCATGCCTCTGAGCCCCGTGGAGGTGGAAGCATGGG
GATGCATGCCTCTGAGCCCCGTGGAGGTGGAAGCATGGGGCTGCATGCCTCTGAGCCCCG
TGGAGGTGGAAGCATGGGGCTGCATGCCTCTGAGCCCTGT..........

Sequence Detail Report

Gene Symbol (Gene ID) Plekhb2 (ENSMUSG00000026123)
Transcript ID ENSMUST00000027297
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 222 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information