MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Ptpn18 (ENSMUSG00000026126)

Cross Reference

CCDS	CCDS14867.1
EMBL	AK144353, BC008512, U35124, ...show all
Fantom	G630030E23
GO	GO:0004726, GO:0005515, GO:0005515, ...show all
goslim_goa	GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name	Ptpn18-002
OTTP	OTTMUSP00000068237
OTTT	OTTMUST00000126097
protein_id	AAB18623.1, AAB82736.1, AAC52991.1, ...show all
RefSeq_mRNA	NM_011206.2

RefSeq_mRNA_predicted	XM_006495800.2
RefSeq_peptide	NP_035336
RefSeq_peptide_predicted	XP_006495863.1
UCSC	uc007aos.1
UniParc	UPI0000027E91
Uniprot/SWISSPROT	Q61152
Vega_transcript	OTTMUST00000126097, Ptpn18-002
Vega_translation	178916, OTTMUSP00000068237

Definition

protein_id:ENSMUSP00000027302
translation:

MSRHTDLVRSFLEQLEARDYREGAILAREFSDIKARSVAWKSEGVCSTKAGSRLGNTNKN
RYKDVVAYDETRVILSLLQEEGHGDYINANFIRGIDGSQAYIATQGPLPHTLLDFWRLVW
EFGVKVILMACQETENGRRKCERYWAREQEPLKAGPFCITLTKETTLNADITLRTLQVTF
QKEFRSVHQLQYMSWPDHGVPSSSDHILTMVEEARCLQGLGPGPLCVHCSAGCGRTGVLC
AVDYVRQLLLTQTIPPNFSLFQVVLEMRKQRPAAVQTEEQYRFLYHTVAQLFSRTLQDTS
PHYQNLKENCAPICKEAFSLRTSSALPATSRPPGGVLRSISVPAPPTLPMADTYAVVQKR
GASAGTGPGPRAPTSTDTPIYSQVAPRAQRPVAHTEDAQGTTALRRVPADQNSSGPDAYE
EVTDGAQTGGLGFNLRIGRPKGPRDPPAEWTRV

Chromosome

Length
Position(start - end)

13821
34459824 - 34473646

Orient to Chromosome

plus

Link

Location : (1:34459824-34473646)
/

Detail Map

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Ptpn18 (ENSMUSG00000026126)
Transcript ID	ENSMUST00000027302

Reports
substitution
cSNPs	9
Insertion	14
Deletion	9
SNPs	-1kb 34454944(c.-4880C>T), 34454950(c.-4874A>G), 34455248(c.-4576G>A), 34455253(c.-4571C>A), 34455641(c.-4183A>G), 34455696(c.-4128A>G), 34455756(c.-4068C>T), 34455973(c.-3851A>T), 34456009(c.-3815G>A), 34456180(c.-3644T>C), 34456212(c.-3612T>C), 34456316(c.-3508A>C), 34456503(c.-3321G>A), 34456614(c.-3210G>A), 34456620(c.-3204T>G), 34456622(c.-3202A>G), 34456682(c.-3142T>C), 34456768(c.-3056C>T), 34456771(c.-3053T>C), 34456791(c.-3033G>C), 34456838(c.-2986A>C), 34457074(c.-2750C>T), 34457192(c.-2632G>T), 34457211(c.-2613G>T), 34457263(c.-2561T>C), 34457324(c.-2500A>C), 34457335(c.-2489A>G), 34457378(c.-2446A>G), 34457447(c.-2377T>C), 34457448(c.-2376G>A), 34457830(c.-1994C>T), 34457831(c.-1993A>C), 34457888(c.-1936A>G), 34457948(c.-1876A>T), 34458230(c.-1594G>T), 34458417(c.-1407G>T), 34458511(c.-1313C>T), 34458556(c.-1268C>G), 34458755(c.-1069A>G), 34459110(c.-714C>G), 34459416(c.-408C>T), 34459553(c.-271C>T), 34459583(c.-241G>A), 5'UTR CDS 34459853(c.30C>T), 34463273(c.284T>C), 34471661(c.777T>C), 34471703(c.819A>G), 34472843(c.1094G>T), 34472870(c.1121C>A), 34472951(c.1202C>T), 34473372(c.1257C>T), 34473402(c.1287A>T), 3'UTR INTRON 34460969(c.93+1053A>G), 34463059(c.203-48C>T), 34463218(c.279+35G>A), 34465447(c.414+1943T>C), 34465591(c.414+2087C>T), 34465963(c.415-2330T>C), 34466207(c.415-2086G>A), 34466216(c.415-2077C>A), 34466280(c.415-2013C>A), 34466454(c.415-1839G>A), 34466536(c.415-1757C>T), 34466568(c.415-1725C>T), 34467025(c.415-1268G>A), 34467499(c.415-794T>C), 34467643(c.415-650C>T), 34467708(c.415-585T>C), 34467713(c.415-580T>C), 34467717(c.415-576G>C), 34468489(c.483+128A>G), 34468531(c.483+170G>T), 34468632(c.483+271T>C), 34468782(c.483+421C>T), 34468795(c.483+434A>T), 34468885(c.483+524A>G), 34468891(c.483+530G>A), 34469236(c.484-604T>A), 34469315(c.484-525G>C), 34469552(c.484-288T>C), 34469580(c.484-260C>T), 34469836(c.484-4A>T), 34470009(c.546+107C>T), 34470355(c.689+13T>A), 34470497(c.689+155T>C), 34470498(c.689+156G>A), 34470523(c.689+181T>C), 34470603(c.689+261T>C), 34470654(c.689+312C>T), 34470661(c.689+319C>T), 34470671(c.689+329G>A), 34470698(c.689+356C>T), 34470803(c.689+461T>C), 34470824(c.689+482C>T), 34470938(c.690-555C>T), 34470969(c.690-524T>C), 34471089(c.690-404C>T), 34471094(c.690-399A>C), 34471136(c.690-357T>C), 34471257(c.690-236T>A), 34471271(c.690-222C>A), 34471314(c.690-179G>A), 34471428(c.690-65C>G), 34471473(c.690-20C>T), 34471483(c.690-10C>T), 34471598(c.756+39T>C), 34471765(c.834+47G>C), 34471919(c.924+18T>C), 34472080(c.925-23C>T), 34472197(c.1013+6G>A), 34472500(c.1014-263T>C), 34472755(c.1014-8C>T), 34472986(c.1219+18G>A), 34473167(c.1220-168G>T), 34473310(c.1220-25C>T), 34473313(c.1220-22A>G), 34473509(c.1295-70G>A), +1kb 34473788(c.142G>T), 34473796(c.150T>C), 34473957(c.311C>T), 34474015(c.369C>G), 34474026(c.380A>G), 34474033(c.387G>C), 34474102(c.456G>T), 34474134(c.488T>C), 34474135(c.489G>C), 34474165(c.519C>T), 34474430(c.784C>T), 34474431(c.785A>G), 34474432(c.786A>G), 34474461(c.815C>G), 34474975(c.1329A>G), 34475225(c.1579A>T), 34475289(c.1643T>C), 34475295(c.1649G>A), 34475340(c.1694A>T), 34475388(c.1742G>A), 34475399(c.1753G>T), 34475535(c.1889G>T), 34475559(c.1913G>A), 34475606(c.1960T>G), 34475630(c.1984T>C), 34475749(c.2103A>G), 34475879(c.2233T>G), 34475898(c.2252A>C), 34475938(c.2292A>T), 34476090(c.2444G>C), 34476113(c.2467T>C), 34476158(c.2512T>C), 34476170(c.2524T>G), 34476209(c.2563G>T), 34476251(c.2605C>T), 34476268(c.2622T>A), 34476293(c.2647T>C), 34476370(c.2724T>C), 34476380(c.2734A>G), 34476704(c.3058G>A), 34477433(c.3787G>A), 34478259(c.4613A>G), 34478372(c.4726C>T), 34478489(c.4843C>T), 34478526(c.4880C>T), 34478615(c.4969A>G), 34478659(c.5013C>T), 34478713(c.5067T>C),
Insertions	-1kb 5'UTR CDS 3'UTR INTRON 34461146 (c.93+1230_93+1231insC), 34461377 (c.94-1310_94-1307dupCAAA), 34464304 (c.414+803_414+804insCCAAA), 34465077 (c.414+1579_414+1580dupCC), 34468950 (c.483+598dupA), 34469275 (c.484-565_484-564insT), 34469614 (c.484-226_484-225insT), 34470716 (c.689+377dupG), +1kb 34473970 (c.324_325insA), 34474966 (c.1320_1321insTGGT), 34476494 (c.2848_2849insTTAC), 34476764 (c.3118_3119insATT), 34477217 (c.3571_3572insA), 34477684 (c.4038_4039insT),
Deletions	-1kb 34458862 (c.-961_-958delTTTA), 34458981 (c.-842delT), 5'UTR 34459798 (c.-23delG), CDS 3'UTR INTRON 34465829 (c.414+2328_414+2330delGCT), 34466103 (c.415-2189_415-2180delTTTTTTTTTT), 34470159 (c.547-37_547-34delCTTT), +1kb 34474529 (c.884delG), 34474886 (c.1241_1243delGAG), 34475771 (c.2126_*2129delAAGT),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	5
non-synonymous num	4
synonymous substitutions	34459853 (p.Ser10Ser), 34471661 (p.Ser259Ser), 34471703 (p.Ala273Ala), 34473372 (p.Tyr419Tyr), 34473402 (p.Gly429Gly),
non-synonymous substitutions	34463273 (p.Ile95Thr), 34472843 (p.Gly365Val), 34472870 (p.Thr374Asn), 34472951 (p.Thr401Ile),
B6 transcript (ENSMUST00000027302)	MSRHTDLVRSFLEQLEARDYREGAILAREFSDIKARSVAWKSEGVCSTKAGSRLGNTNKN RYKDVVAYDETRVILSLLQEEGHGDYINANFIRGIDGSQAYIATQGPLPHTLLDFWRLVW EFGVKVILMACQETENGRRKCERYWAREQEPLKAGPFCITLTKETTLNADITLRTLQVTF QKEFRSVHQLQYMSWPDHGVPSSSDHILTMVEEARCLQGLGPGPLCVHCSAGCGRTGVLC AVDYVRQLLLTQTIPPNFSLFQVVLEMRKQRPAAVQTEEQYRFLYHTVAQLFSRTLQDTS PHYQNLKENCAPICKEAFSLRTSSALPATSRPPGGVLRSISVPAPPTLPMADTYAVVQKR GASAGTGPGPRAPTSTDTPIYSQVAPRAQRPVAHTEDAQGTTALRRVPADQNSSGPDAYE EVTDGAQTGGLGFNLRIGRPKGPRDPPAEWTRV*
MSMv4 transcript	MSRHTDLVRSFLEQLEARDYREGAILAREFSDIKARSVAWKSEGVCSTKAGSRLGNTNKN RYKDVVAYDETRVILSLLQEEGHGDYINANFIRGTDGSQAYIATQGPLPHTLLDFWRLVW EFGVKVILMACQETENGRRKCERYWAREQEPLKAGPFCITLTKETTLNADITLRTLQVTF QKEFRSVHQLQYMSWPDHGVPSSSDHILTMVEEARCLQGLGPGPLCVHCSAGCGRTGVLC AVDYVRQLLLTQTIPPNFSLFQVVLEMRKQRPAAVQTEEQYRFLYHTVAQLFSRTLQDTS PHYQNLKENCAPICKEAFSLRTSSALPATSRPPGGVLRSISVPAPPTLPMADTYAVVQKR GASAVTGPGPRAPNSTDTPIYSQVAPRAQRPVAHTEDAQGITALRRVPADQNSSGPDAYE EVTDGAQTGGLGFNLRIGRPKGPRDPPAEWTRV*
homology	99.12 (454 / 454)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Ptpn18 (ENSMUSG00000026126)
Transcript ID	ENSMUST00000027302


..........TCACTATAGAGCCTGTGTAGTTGTCCAAGGACAACACTCTGGAGTCGATT
TTCTCCTTCCACCATGTGGGTCCTAGGTATCAAATCCAGGTTGTCATGTTTATTTAGTGG
CAAGGCATTTACCTACTGAACCATTCCACCATCATTAAAACATTTTCCTTTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCCCTTCCTTCCTTCCTTCCTTTCTTCCATTTTTTTTTTTAA
CTTTGAGACAGGATTTCATCACAAGCTAACTTTGAATTCACAATGTAAGCTAGGGTGACC
TTGACTTTCTGATTTTCTTGCCTCCACCTTGTGAATGCTGGGACAGGCACTCTACGAATT
CAGCTACAAACCTTAGCACGGCTCTTCTCCAGTCTTTAGTCTCCAGGACCCCAGGAGCTT
CAGCATAAGATCTTCTTCAAACTCCTGAAGGGGGACGGAGTGAGTGTTGAGACCACTTTT
CCTCCCAATGCCTCTCTAGTCTCTTCCTCCCTGAGGGGTATGGGTTAAGATCCACAAGTT
AGGACTGAATCCTGGTGTCCCCGCTTTTCCAGCAGGTTCCAAAAGTGAAATCACACCCCC
TACCCTCAGAAATAGGCCTTTTCCCAGAGCAAAGTGCAGGGAATATATTTATTCGAAGTC
CTCGACCTCTCTCATATTCCGCTGTCGCACGACTGTGAACCTCAGCGCTCGCAGGACTCC
GGAGCAACCTTGGGAACCCGGCCTGCGAGATTGAGAGCGCAGCCATCCCCCTGGAAAGGC
CAATGGGACTGAGCGTTCTGTGCGGACTCCACCAGCTTCACGGCAGCCAAAGCACCCGAG
GCGCCAGTGGGGAATTGCGGGACCCGCAGCTACTTGGACGGCCAGTTCGGCTGCGGTGGC
AGCCAGCACCTATGGGCGGGACGAACGGAGTGAACTCCTAGTGCCATTGGCCGAGGAGCC
TGCCAATTACCGGTCTTCATTGGCTGCTGGAATGGAGGCCCCACCTCGCA
GTGGCTAAATTCTCGGAGTCGGATCACTCCTTGTGGGAGACCTCAGAGCGGGTCGCAGCATGAGTCGCCATACGGACTTGGTGAGGAGTTTCTTGGAGCAGCTGGAGGCCCGGGACTACCGGGAGGGGGCAATCCTCGCTCGTGAGTTCAGC
GTGAGTGACACTCCAGCCATCAAGC..........TTCTGCTCATGGTGCTTTCCACTAG
GACATTAAGGCCCGCTCAGTGGCCTGGAAGTCTGAAGGTGTGTGTTCCACTAAAGCCGGCAGTCGGCTTGGGAACACGAACAAGAACCGCTACAAAGATGTGGTAGCAT
GTAAGTCAGTGGGTATCTTGAGGGA..........CTCCACATGTCCCACCCTCTCCCAG
ATGATGAGACAAGAGTCATCCTTTCCCTGCTCCAAGAGGAGGGACATGGAGATTACATCAATGCCAACTTCATCCGG
GTCAGGCTAGTGATCAGGGGAGGGG..........TCGTTAATGAATGGGCCTTTCCTAG
GGCACAGATGGAAGCCAGGCCTACATTGCGACGCAAGGACCCCTGCCTCACACACTGTTGGACTTCTGGCGCCTGGTTTGGGAGTTTGGGGTCAAG
GTCAGCTTTGCGGGACAGAGAGAGA..........TCCGTCTTCCTTACCTTTTGTCTAG
GTAATCCTGATGGCCTGTCAAGAGACAGAAAATGGACGG
GTATGTATCCTCAGCCTCCTAGAAT..........TTGCCTTCCTCACCTTACTTTGCAG
AGGAAGTGTGAACGCTACTGGGCCCGGGAGCAGGAGCCTCTAAAGGCTGGGCCTTTCTGCATCACCCTG
GTAAGTTGGAGCAGGGCTGGGAACA..........TGTCCCCTTCTCACATGGCGCTTAG
ACAAAGGAGACAACACTGAATGCAGACATCACTCTCAGGACCCTCCAGGTTACATTCCAGAAG
GTACCAAAACGTTAAAAGGTGAAGG..........TTTCCACTCTCTGTTCCCGTCTCAG
GAATTCCGCTCTGTGCACCAGCTACAGTATATGTCCTGGCCAGACCACGGGGTTCCCAGCAGTTCTGATCACATTCTCACCATGGTGGAGGAGGCCCGCTGCCTCCAAGGGCTTGGACCTGGACCCCTCTGTGTCCACTGCAG
GTTTAGGAAATTAGTTTTATGAGGA..........GTCTGTTCTGATTCATGATTGTCAG
TGCTGGCTGCGGACGAACAGGTGTCCTGTGCGCTGTTGACTATGTGAGGCAGTTGCTGCTGACCCAG
GTATGACGTCCTCTGCTCTGTGTGC..........GTCACACTTCCCCTCTCTATCCCAG
ACAATCCCTCCCAACTTCAGCCTCTTCCAAGTGGTCCTGGAGATGCGGAAACAGCGGCCTGCGGCAGTGCAGACAGAG
GTATGTGCTTGCCCCGTCTTCCTGT..........TCTCAATGACCACTCACCCCAACAG
GAGCAGTACAGGTTCCTGTACCACACAGTGGCTCAGCTATTCTCCCGCACTCTCCAGGACACCAGCCCCCACTACCAGAACCTCAAGGAG
GTACAGAGCCCCCAATTCCACCCTT..........ACTGACCCTGCCTGCTTCCCTGCAG
AACTGCGCTCCAATCTGCAAGGAAGCCTTCTCCCTCAGGACCTCCTCAGCCCTGCCTGCCACATCCCGGCCACCAGGAGGGGTTCTCAG
GTACTAGGCTCACTCTGTCCCTGGA..........TTCCTCTGCTTGTTGCCTGCTGCAG
GAGCATCTCGGTGCCTGCGCCCCCGACCCTCCCCATGGCTGACACTTACGCTGTGGTGCAGAAGCGTGGCGCTTCGGCGGTCACAGGGCCGGGGCCGCGGGCGCCCAACAGCACGGACACCCCGATCTACAGCCAGGTGGCTCCACGTGCCCAGCGACCGGTGGCACACACGGAGGACGCACAGGGGATAACGGCACTGCGCCGAG
GTGAGTTGAGGCCCTCCAGGGGTGT..........TCCGTAGGGGTTCTCCTGCCCTCAG
TTCCTGCGGACCAAAACTCTTCCGGGCCTGATGCCTATGAAGAAGTAACAGATGGAGCACAGACTGGTGGGCTAG
GTAAGTCAGAGCCTAGGGTGCAGCT..........CTGCATGGAGCCCTTCTTCCCTTAG
GCTTCAACTTGCGCATCGGAAGGCCCAAAGGGCCCCGGGATCCTCCAGCAGAGTGGACACGGGTGTAACGAGTGCTGTGCCAGTTATAGCCTGCCACTCGGTGGTGGCTGGACTCCTGGAACCACCATACTGCTGTGCAGTGTGTTATGTATGAGTGGGACTTGTGGGCCTGATTCAAAATAAAAGTTTCTCAGGGCAGAAAAAAA
TAGTGGCTTTGCTCCAGTGATTCTAGCAGTCAAAGACTGGGGCTAAGAGAGGTAAGTGGG
GGAGGTGGTGGATCTATTCTGAGACAATTTAAGGAAGCAGGTCAGGAGTGGCCATCACCA
CCCTCCTCCCCGTACACCTACCGGAGAGTGCATCCCAGACAGAGTCCTAGCTTACAGAGC
CCTCAGCAGGTGCCTATCAGGATCAACAAGCTGACCTCCAGCTAGAGACAGGTCTAGATA
GGTCCTCACATAAACTTGCAATGAGCTAGAAAGATCTCTGGCTGGTCAGAGAAATGGAAC
ACCAGCCAGGTAAATAGTGTGCCATCCAGAAAGACAGAACTTCCAGCCCCCACTTTCCTT
GAGATGCAAGAAAGTAGATCTTTCAGAACAAACATATGCACGATGCTCCAGACCCCGATC
CTGCCCCAACCCCACCCCCAACCCCACCCCGCCCCACTGCCACAATGTCACCAACACAGG
AGGGTCTGTATGGCAGTTGTTCATCCAGTCAGTCCTGGCTATGCTTTCTCCAGGCTCTTG
CAATTCCTGTCTTGAATCTGATGAAGGCTCCTACCATGAACTTGCGTATCTAGGCAAACA
TTAAAATGATTTTCGTAGAATTCAGTGAGGAGTGAGCCAAAAACTTGGCTCAAGAGCCTT
ATGTGGCTTCATGGATGTCAGACCACAGCCAGCTGCAGGCTCCCAGGTTCATGGCGGTCC
TGGGAAGCATTCGCCTTTTAGTGTTGGGGGGGGGAGGAGGTTATGAAACTTGTCTTATTT
GGCCACAGTGTCTACTCTCATTGTCAAGTGCTAGAAGATCTGTGCCACGAACAGCTCGGC
CAACAGGAACCAGGGATGACTGGGAAACCTTGGGAATCTTTAGCAGCTCAGTGAATCTAA
ATTCTAAGGTGAAAGTCTCGGGGTGGGGGTGGGGCGGCTGGAGAGATGGCTCAGTGGTTA
AGAGCACTGACTGCTCTTAAAGGTCCTGAATTCAAATCCC..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........TCACTATAGAGCCTGTGTAGTTGTCCAAGGACAACACTCTGGAGTCGATT TTCTCCTTCCACCATGTGGGTCCTAGGTATCAAATCCAGGTTGTCATGTTTATTTAGTGG CAAGGCATTTACCTACTGAACCATTCCACCATCATTAAAACATTTTCCTTTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCCCTTCCTTCCTTCCTTCCTTTCTTCCATTTTTTTTTTTAA CTTTGAGACAGGATTTCATCACAAGCTAACTTTGAATTCACAATGTAAGCTAGGGTGACC TTGACTTTCTGATTTTCTTGCCTCCACCTTGTGAATGCTGGGACAGGCACTCTACGAATT CAGCTACAAACCTTAGCACGGCTCTTCTCCAGTCTTTAGTCTCCAGGACCCCAGGAGCTT CAGCATAAGATCTTCTTCAAACTCCTGAAGGGGGACGGAGTGAGTGTTGAGACCACTTTT CCTCCCAATGCCTCTCTAGTCTCTTCCTCCCTGAGGGGTATGGGTTAAGATCCACAAGTT AGGACTGAATCCTGGTGTCCCCGCTTTTCCAGCAGGTTCCAAAAGTGAAATCACACCCCC TACCCTCAGAAATAGGCCTTTTCCCAGAGCAAAGTGCAGGGAATATATTTATTCGAAGTC CTCGACCTCTCTCATATTCCGCTGTCGCACGACTGTGAACCTCAGCGCTCGCAGGACTCC GGAGCAACCTTGGGAACCCGGCCTGCGAGATTGAGAGCGCAGCCATCCCCCTGGAAAGGC CAATGGGACTGAGCGTTCTGTGCGGACTCCACCAGCTTCACGGCAGCCAAAGCACCCGAG GCGCCAGTGGGGAATTGCGGGACCCGCAGCTACTTGGACGGCCAGTTCGGCTGCGGTGGC AGCCAGCACCTATGGGCGGGACGAACGGAGTGAACTCCTAGTGCCATTGGCCGAGGAGCC TGCCAATTACCGGTCTTCATTGGCTGCTGGAATGGAGGCCCCACCTCGCA
1	EXON 1	34459765	34459916	-	0	152	GTGGCTAAATTCTCGGAGTCGGATCACTCCTTGTGGGAGACCTCAGAGCGGGTCGCAGCA TGAGTCGCCATACGGACTTGGTGAGGAGTTTCTTGGAGCAGCTGGAGGCCCGGGACTACC GGGAGGGGGCAATCCTCGCTCGTGAGTTCAGC
	INTRON 1 - 2	34459917	34462701			2785	GTGAGTGACACTCCAGCCATCAAGC..........TTCTGCTCATGGTGCTTTCCACTAG
2	EXON 2	34462702	34462810	0	1	109	GACATTAAGGCCCGCTCAGTGGCCTGGAAGTCTGAAGGTGTGTGTTCCACTAAAGCCGGC AGTCGGCTTGGGAACACGAACAAGAACCGCTACAAAGATGTGGTAGCAT
	INTRON 2 - 3	34462811	34463106			296	GTAAGTCAGTGGGTATCTTGAGGGA..........CTCCACATGTCCCACCCTCTCCCAG
3	EXON 3	34463107	34463183	1	0	77	ATGATGAGACAAGAGTCATCCTTTCCCTGCTCCAAGAGGAGGGACATGGAGATTACATCA ATGCCAACTTCATCCGG
	INTRON 3 - 4	34463184	34463268			85	GTCAGGCTAGTGATCAGGGGAGGGG..........TCGTTAATGAATGGGCCTTTCCTAG
4	EXON 4	34463269	34463364	0	0	96	GGCACAGATGGAAGCCAGGCCTACATTGCGACGCAAGGACCCCTGCCTCACACACTGTTG GACTTCTGGCGCCTGGTTTGGGAGTTTGGGGTCAAG
	INTRON 4 - 5	34463365	34463465			101	GTCAGCTTTGCGGGACAGAGAGAGA..........TCCGTCTTCCTTACCTTTTGTCTAG
5	EXON 5	34463466	34463504	0	0	39	GTAATCCTGATGGCCTGTCAAGAGACAGAAAATGGACGG
	INTRON 5 - 6	34463505	34468292			4788	GTATGTATCCTCAGCCTCCTAGAAT..........TTGCCTTCCTCACCTTACTTTGCAG
6	EXON 6	34468293	34468361	0	0	69	AGGAAGTGTGAACGCTACTGGGCCCGGGAGCAGGAGCCTCTAAAGGCTGGGCCTTTCTGC ATCACCCTG
	INTRON 6 - 7	34468362	34469839			1478	GTAAGTTGGAGCAGGGCTGGGAACA..........TGTCCCCTTCTCACATGGCGCTTAG
7	EXON 7	34469840	34469902	0	0	63	ACAAAGGAGACAACACTGAATGCAGACATCACTCTCAGGACCCTCCAGGTTACATTCCAG AAG
	INTRON 7 - 8	34469903	34470199			297	GTACCAAAACGTTAAAAGGTGAAGG..........TTTCCACTCTCTGTTCCCGTCTCAG
8	EXON 8	34470200	34470342	0	2	143	GAATTCCGCTCTGTGCACCAGCTACAGTATATGTCCTGGCCAGACCACGGGGTTCCCAGC AGTTCTGATCACATTCTCACCATGGTGGAGGAGGCCCGCTGCCTCCAAGGGCTTGGACCT GGACCCCTCTGTGTCCACTGCAG
	INTRON 8 - 9	34470343	34471492			1150	GTTTAGGAAATTAGTTTTATGAGGA..........GTCTGTTCTGATTCATGATTGTCAG
9	EXON 9	34471493	34471559	2	0	67	TGCTGGCTGCGGACGAACAGGTGTCCTGTGCGCTGTTGACTATGTGAGGCAGTTGCTGCT GACCCAG
	INTRON 9 - 10	34471560	34471640			81	GTATGACGTCCTCTGCTCTGTGTGC..........GTCACACTTCCCCTCTCTATCCCAG
10	EXON 10	34471641	34471718	0	0	78	ACAATCCCTCCCAACTTCAGCCTCTTCCAAGTGGTCCTGGAGATGCGGAAACAGCGGCCT GCGGCAGTGCAGACAGAG
	INTRON 10 - 11	34471719	34471811			93	GTATGTGCTTGCCCCGTCTTCCTGT..........TCTCAATGACCACTCACCCCAACAG
11	EXON 11	34471812	34471901	0	0	90	GAGCAGTACAGGTTCCTGTACCACACAGTGGCTCAGCTATTCTCCCGCACTCTCCAGGAC ACCAGCCCCCACTACCAGAACCTCAAGGAG
	INTRON 11 - 12	34471902	34472102			201	GTACAGAGCCCCCAATTCCACCCTT..........ACTGACCCTGCCTGCTTCCCTGCAG
12	EXON 12	34472103	34472191	0	2	89	AACTGCGCTCCAATCTGCAAGGAAGCCTTCTCCCTCAGGACCTCCTCAGCCCTGCCTGCC ACATCCCGGCCACCAGGAGGGGTTCTCAG
	INTRON 12 - 13	34472192	34472762			571	GTACTAGGCTCACTCTGTCCCTGGA..........TTCCTCTGCTTGTTGCCTGCTGCAG
13	EXON 13	34472763	34472968	2	1	206	GAGCATCTCGGTGCCTGCGCCCCCGACCCTCCCCATGGCTGACACTTACGCTGTGGTGCA GAAGCGTGGCGCTTCGGCGGTCACAGGGCCGGGGCCGCGGGCGCCCAACAGCACGGACAC CCCGATCTACAGCCAGGTGGCTCCACGTGCCCAGCGACCGGTGGCACACACGGAGGACGC ACAGGGGATAACGGCACTGCGCCGAG
	INTRON 13 - 14	34472969	34473334			366	GTGAGTTGAGGCCCTCCAGGGGTGT..........TCCGTAGGGGTTCTCCTGCCCTCAG
14	EXON 14	34473335	34473409	1	1	75	TTCCTGCGGACCAAAACTCTTCCGGGCCTGATGCCTATGAAGAAGTAACAGATGGAGCAC AGACTGGTGGGCTAG
	INTRON 14 - 15	34473410	34473578			169	GTAAGTCAGAGCCTAGGGTGCAGCT..........CTGCATGGAGCCCTTCTTCCCTTAG
15	EXON 15	34473579	34473784	1	-	206	GCTTCAACTTGCGCATCGGAAGGCCCAAAGGGCCCCGGGATCCTCCAGCAGAGTGGACAC GGGTGTAACGAGTGCTGTGCCAGTTATAGCCTGCCACTCGGTGGTGGCTGGACTCCTGGA ACCACCATACTGCTGTGCAGTGTGTTATGTATGAGTGGGACTTGTGGGCCTGATTCAAAA TAAAAGTTTCTCAGGGCAGAAAAAAA
	3' upstream sequence						TAGTGGCTTTGCTCCAGTGATTCTAGCAGTCAAAGACTGGGGCTAAGAGAGGTAAGTGGG GGAGGTGGTGGATCTATTCTGAGACAATTTAAGGAAGCAGGTCAGGAGTGGCCATCACCA CCCTCCTCCCCGTACACCTACCGGAGAGTGCATCCCAGACAGAGTCCTAGCTTACAGAGC CCTCAGCAGGTGCCTATCAGGATCAACAAGCTGACCTCCAGCTAGAGACAGGTCTAGATA GGTCCTCACATAAACTTGCAATGAGCTAGAAAGATCTCTGGCTGGTCAGAGAAATGGAAC ACCAGCCAGGTAAATAGTGTGCCATCCAGAAAGACAGAACTTCCAGCCCCCACTTTCCTT GAGATGCAAGAAAGTAGATCTTTCAGAACAAACATATGCACGATGCTCCAGACCCCGATC CTGCCCCAACCCCACCCCCAACCCCACCCCGCCCCACTGCCACAATGTCACCAACACAGG AGGGTCTGTATGGCAGTTGTTCATCCAGTCAGTCCTGGCTATGCTTTCTCCAGGCTCTTG CAATTCCTGTCTTGAATCTGATGAAGGCTCCTACCATGAACTTGCGTATCTAGGCAAACA TTAAAATGATTTTCGTAGAATTCAGTGAGGAGTGAGCCAAAAACTTGGCTCAAGAGCCTT ATGTGGCTTCATGGATGTCAGACCACAGCCAGCTGCAGGCTCCCAGGTTCATGGCGGTCC TGGGAAGCATTCGCCTTTTAGTGTTGGGGGGGGGAGGAGGTTATGAAACTTGTCTTATTT GGCCACAGTGTCTACTCTCATTGTCAAGTGCTAGAAGATCTGTGCCACGAACAGCTCGGC CAACAGGAACCAGGGATGACTGGGAAACCTTGGGAATCTTTAGCAGCTCAGTGAATCTAA ATTCTAAGGTGAAAGTCTCGGGGTGGGGGTGGGGCGGCTGGAGAGATGGCTCAGTGGTTA AGAGCACTGACTGCTCTTAAAGGTCCTGAATTCAAATCCC..........

Sequence Detail Report

Gene Symbol (Gene ID)	Ptpn18 (ENSMUSG00000026126)
Transcript ID	ENSMUST00000027302

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 454 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information