MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Chd1l (ENSMUSG00000028089)

Cross Reference

CCDS	CCDS38561.1
EMBL	AK014473, AK165656, BC052385, ...show all
Fantom	4432404A22, G430108O15
GO	GO:0000166, GO:0000166, GO:0004003, ...show all
goslim_goa	GO:0003674, GO:0004386, GO:0005575, ...show all
MGI_trans_name	Chd1l-001
OTTP	OTTMUSP00000070813
OTTT	OTTMUST00000132984
protein_id	AAH52385.1, AAH57567.1, AAH62966.1, ...show all
RefSeq_mRNA	NM_026539.2

RefSeq_peptide	NP_080815
UCSC	uc008qow.1
UniParc	UPI0000027341
Uniprot/SWISSPROT	Q9CXF7
Vega_transcript	Chd1l-001, OTTMUST00000132984
Vega_translation	188239, OTTMUSP00000070813

Definition

protein_id:ENSMUSP00000029730
translation:

MASGLPRFLQALPAEHGPEPLRTRVQEPDLQQWGLTGIRLRSYQLEGVNWLVQCFHCQNG
CILGDEMGLGKTCQTIALLIYLVGRLNDEGPFLVLCPLSVLSNWKEEMERFAPGLSCVTY
TGDKEERARLQQDLRQESGFHVLLTTYEICLKDASFLKSFSWSVLAVDEAHRLKNQSSLL
HRTLSEFSAVFRLLLTGTPIQNSLRELYSLLCVVEPDLFCREQVEDFVQRYQDIEKESKS
ASELHRLLQPFLLRRVKAQVATELPKKTEVVVYHGMSALQKKYYKAILMKDLDAFENETA
KKVKLQNILTQLRKCVDHPYLFDGVEPEPFEVGEHLIEASGKLHLLDRLLAFLYSGGHRV
LLFSQMTHMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGNQPIFVFLLSTRAGGV
GMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASK
LQLTNMVIEGGHFTPGAQKPSAEADFQLSEILKFGLDKLLSSEGSSMEDIDLKSILGETK
DGQWTPDALPAAAAAGGGSLEPEEGSELESRSYENHMYLFEGRDYSKEPSKEDRKSFEQL
VNLQKTLLEKTSHGGRTLRNKGSVLIPGLAEGPIKRKKILSPEELEDRRKKRQEAAAKRK
RLMEEKRKEKEEAEHRKKMAWWESNGYQSFCLSSEDSELEDLEGGDESSAELAYEDLDST
SINYVSGDVTHPQAGEEDAVIVHCVDDSGRWGRGGLFTALEVRSAEPRKIYELAGKMEDL
SLGDVLLFPIDDKESRDKGQDLLALVVAQHRDRTNVLSGIKMAALEEGLKKIFLAAKKKK
ASVHLPRIGHATKGFNWYGTERLIRKHLATRGIPTYIYYFPRSKARHSQPASSSSAPLVP

Chromosome

Length
Position(start - end)

49,155
97,561,015 - 97,610,171

Orient to Chromosome

minus

Link

Location : (3:97561015-97610171)
/

Detail Map

name	Chd1l (ENSMUSG00000028089)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Chd1l note : chromodomain helicase DNA binding protein 1-like [Source:MGI Symbol;Acc:MGI:1915308]

name	RP24-316D12.2 (ENSMUSG00000105004)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : RP24-316D12.2

name	Chd1l (ENSMUSG00000028089)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000029730

name	Chd1l (ENSMUSG00000028089) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS38561.1 Uniprot/SWISSPROT:Q9CXF7 RefSeq_peptide:NP_080815 RefSeq_mRNA:NM_026539.2 Vega_transcript:Chd1l-001 Vega_transcript:OTTMUST00000132984 UCSC:uc008qow.1 Fantom:4432404A22 Fantom:G430108O15 EMBL:AK014473 EMBL:AK165656 EMBL:BC052385 EMBL:BC057567 EMBL:BC062966 GO:GO:0000166 GO:GO:0000166 GO:GO:0004003 GO:GO:0005515 GO:GO:0005524 GO:GO:0005634 GO:GO:0005634 GO:GO:0005654 GO:GO:0005654 GO:GO:0005737 GO:GO:0005737 GO:GO:0005886 GO:GO:0005886 GO:GO:0006281 GO:GO:0006338 GO:GO:0006338 GO:GO:0006974 GO:GO:0006974 GO:GO:0016887 GO:GO:0016887 GO:GO:0032508 MGI_trans_name:Chd1l-001 Vega_translation:188239 Vega_translation:OTTMUSP00000070813 goslim_goa:GO:0003674 goslim_goa:GO:0004386 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005737 goslim_goa:GO:0005886 goslim_goa:GO:0006259 goslim_goa:GO:0006950 goslim_goa:GO:0008150 goslim_goa:GO:0016887 goslim_goa:GO:0034641 goslim_goa:GO:0043167 goslim_goa:GO:0043226 goslim_goa:GO:0051276 protein_id:AAH52385.1 protein_id:AAH57567.1 protein_id:AAH62966.1 protein_id:BAB29376.1 protein_id:BAE38319.1 OTTP:OTTMUSP00000070813 OTTT:OTTMUST00000132984 UniParc:UPI0000027341
definition	note : transcript_id=ENSMUST00000029730 protein_id : ENSMUSP00000029730 translation : MASGLPRFLQALPAEHGPEPLRTRVQEPDLQQWGLTGIRLRSYQLEGVNWLVQCFHCQNGCILGDEMGLGKTCQTIALLIYLVGRLNDEGPFLVLCPLSVLSNWKEEMERFAPGLSCVTYTGDKEERARLQQDLRQESGFHVLLTTYEICLKDASFLKSFSWSVLAVDEAHRLKNQSSLLHRTLSEFSAVFRLLLTGTPIQNSLRELYSLLCVVEPDLFCREQVEDFVQRYQDIEKESKSASELHRLLQPFLLRRVKAQVATELPKKTEVVVYHGMSALQKKYYKAILMKDLDAFENETAKKVKLQNILTQLRKCVDHPYLFDGVEPEPFEVGEHLIEASGKLHLLDRLLAFLYSGGHRVLLFSQMTHMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGNQPIFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMVIEGGHFTPGAQKPSAEADFQLSEILKFGLDKLLSSEGSSMEDIDLKSILGETKDGQWTPDALPAAAAAGGGSLEPEEGSELESRSYENHMYLFEGRDYSKEPSKEDRKSFEQLVNLQKTLLEKTSHGGRTLRNKGSVLIPGLAEGPIKRKKILSPEELEDRRKKRQEAAAKRKRLMEEKRKEKEEAEHRKKMAWWESNGYQSFCLSSEDSELEDLEGGDESSAELAYEDLDSTSINYVSGDVTHPQAGEEDAVIVHCVDDSGRWGRGGLFTALEVRSAEPRKIYELAGKMEDLSLGDVLLFPIDDKESRDKGQDLLALVVAQHRDRTNVLSGIKMAALEEGLKKIFLAAKKKKASVHLPRIGHATKGFNWYGTERLIRKHLATRGIPTYIYYFPRSKARHSQPASSSSAPLVP

name
type	misc_feature
link
xref
definition	note : contig AC140839.9 1..153505(-1)

name	Chd1l (ENSMUSG00000028089)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000132985 Vega_transcript:OTTMUST00000132985 MGI_trans_name:Chd1l-003 OTTT:OTTMUST00000132985
definition	note : retained_intron note : transcript_id=ENSMUST00000195962

name	Chd1l (ENSMUSG00000028089)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000132986 Vega_transcript:OTTMUST00000132986 MGI_trans_name:Chd1l-002 OTTT:OTTMUST00000132986
definition	note : retained_intron note : transcript_id=ENSMUST00000197304

name	RP24-316D12.2 (ENSMUSG00000105004)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000132987 Vega_transcript:OTTMUST00000132987 Clone_based_vega_transcript:RP24-316D12.2-001 OTTT:OTTMUST00000132987
definition	note : TEC note : transcript_id=ENSMUST00000198613

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Chd1l (ENSMUSG00000028089)
Transcript ID	ENSMUST00000029730

Reports
substitution
cSNPs	19
Insertion	23
Deletion	46
SNPs	+1kb 97610204(c.-33A>G), 97610378(c.-207T>C), 97610390(c.-219C>T), 97610563(c.-392G>A), 97610680(c.-509C>A), 97610750(c.-579C>T), 97610897(c.-726C>G), 97611146(c.-975T>G), 97611175(c.-1004T>C), 97611283(c.-1112A>C), 97612322(c.-2151T>C), 97612571(c.-2400C>A), 97612652(c.-2481C>T), 97612825(c.-2654T>C), 97614447(c.-4276C>A), 97614610(c.-4439C>T), 97614615(c.-4444A>G), 97614758(c.-4587G>C), 97614836(c.-4665T>C), 97614864(c.-4693T>C), 97614904(c.-4733T>C), 97615128(c.-4957A>G), 97615136(c.-4965C>T), 97615202(c.-5031T>C), 5'UTR CDS 97561070(c.2648G>A), 97562683(c.2526C>T), 97570245(c.2193C>T), 97571041(c.1896G>A), 97572636(c.1794G>A), 97580998(c.1701A>G), 97581023(c.1676G>A), 97581026(c.1673G>A), 97581097(c.1602C>T), 97583921(c.1254T>C), 97587142(c.1221C>A), 97589920(c.1053G>A), 97591248(c.834T>A), 97591290(c.792C>T), 97594027(c.702C>T), 97594091(c.638T>C), 97603067(c.386G>A), 97603078(c.375G>A), 97610111(c.61C>G), 3'UTR 97560814(c.201A>G), 97560826(c.189C>T), INTRON 97561106(c.2631-19C>T), 97561195(c.2631-108A>G), 97561229(c.2631-142A>G), 97561356(c.2631-269T>A), 97561495(c.2631-408T>G), 97561557(c.2631-470T>G), 97561606(c.2631-519T>A), 97561613(c.2631-526G>C), 97561620(c.2631-533G>A), 97561621(c.2631-534G>C), 97561625(c.2631-538T>G), 97561815(c.2631-728G>T), 97562104(c.2630+475C>T), 97562113(c.2630+466T>C), 97562122(c.2630+457A>G), 97562159(c.2630+420G>A), 97562258(c.2630+321C>T), 97562262(c.2630+317T>G), 97562300(c.2630+279T>C), 97562359(c.2630+220A>G), 97562370(c.2630+209C>T), 97562379(c.2630+200C>A), 97562445(c.2630+134T>C), 97562450(c.2630+129C>T), 97562453(c.2630+126A>C), 97562463(c.2630+116T>C), 97562540(c.2630+39C>T), 97562693(c.2522-6C>T), 97562748(c.2522-61G>T), 97562805(c.2522-118C>T), 97562859(c.2522-172C>T), 97562868(c.2522-181T>C), 97562875(c.2522-188A>G), 97562887(c.2522-200T>C), 97562960(c.2522-273A>G), 97563125(c.2521+332G>C), 97563394(c.2521+63G>A), 97563401(c.2521+56T>C), 97563418(c.2521+39C>T), 97563820(c.2407-249G>A), 97564420(c.2407-849G>A), 97564619(c.2407-1048G>T), 97565117(c.2407-1546G>C), 97565251(c.2406+1508T>C), 97565444(c.2406+1315G>A), 97565538(c.2406+1221C>T), 97565622(c.2406+1137A>G), 97565901(c.2406+858A>C), 97565926(c.2406+833A>G), 97565968(c.2406+791A>T), 97566122(c.2406+637G>C), 97566123(c.2406+636T>C), 97566217(c.2406+542A>C), 97566294(c.2406+465G>A), 97566345(c.2406+414C>T), 97566388(c.2406+371A>T), 97566406(c.2406+353C>T), 97566478(c.2406+281T>C), 97566505(c.2406+254T>C), 97566561(c.2406+198C>T), 97566579(c.2406+180G>T), 97566605(c.2406+154T>A), 97566611(c.2406+148A>C), 97566660(c.2406+99C>T), 97566867(c.2336-38A>G), 97566871(c.2336-42T>A), 97566886(c.2336-57C>T), 97567106(c.2336-277C>T), 97567114(c.2336-285T>C), 97567267(c.2336-438A>G), 97567508(c.2336-679T>A), 97567573(c.2336-744C>T), 97567741(c.2336-912T>C), 97567835(c.2336-1006C>T), 97567853(c.2336-1024T>G), 97567856(c.2336-1027A>G), 97567916(c.2336-1087G>A), 97568020(c.2335+1081A>G), 97568058(c.2335+1043G>A), 97568072(c.2335+1029C>T), 97568165(c.2335+936G>A), 97568171(c.2335+930C>T), 97568312(c.2335+789C>A), 97568352(c.2335+749C>T), 97568377(c.2335+724A>G), 97568470(c.2335+631C>T), 97568477(c.2335+624G>T), 97568486(c.2335+615C>G), 97568489(c.2335+612G>A), 97568762(c.2335+339G>C), 97568875(c.2335+226T>G), 97568900(c.2335+201G>A), 97568940(c.2335+161A>T), 97568968(c.2335+133G>C), 97569419(c.2237-220T>C), 97569450(c.2237-251T>C), 97569700(c.2237-501C>T), 97569730(c.2236+472C>T), 97569913(c.2236+289A>G), 97569961(c.2236+241G>A), 97569962(c.2236+240T>C), 97569993(c.2236+209A>G), 97570023(c.2236+179C>T), 97570415(c.2034-11G>A), 97570465(c.2034-61C>T), 97570472(c.2034-68C>T), 97570601(c.2034-197A>C), 97570656(c.2033+248A>G), 97570750(c.2033+154C>T), 97570811(c.2033+93G>A), 97570826(c.2033+78C>T), 97571324(c.1870-257G>A), 97571327(c.1870-260G>A), 97571331(c.1870-264A>G), 97571339(c.1870-272T>C), 97571376(c.1870-309G>C), 97571417(c.1870-350A>C), 97571431(c.1870-364A>G), 97571555(c.1870-488G>A), 97571573(c.1870-506C>A), 97571579(c.1870-512G>A), 97571580(c.1870-513A>G), 97571598(c.1870-531G>T), 97571619(c.1870-552G>C), 97571643(c.1870-576T>C), 97571661(c.1870-594G>A), 97571673(c.1870-606A>G), 97571804(c.1870-737T>C), 97571818(c.1869+743G>A), 97572296(c.1869+265C>T), 97572372(c.1869+189G>A), 97572402(c.1869+159G>C), 97572533(c.1869+28C>T), 97572549(c.1869+12C>T), 97572743(c.1721-34C>T), 97572783(c.1721-74C>G), 97572880(c.1721-171A>T), 97572932(c.1721-223C>G), 97573193(c.1721-484A>G), 97573362(c.1721-653T>C), 97573514(c.1721-805G>A), 97573831(c.1721-1122C>T), 97573910(c.1721-1201C>T), 97573930(c.1721-1221G>C), 97573942(c.1721-1233T>C), 97574079(c.1721-1370C>G), 97574247(c.1721-1538A>G), 97574402(c.1721-1693A>G), 97574403(c.1721-1694C>G), 97574504(c.1721-1795G>A), 97574631(c.1721-1922G>A), 97574889(c.1721-2180C>T), 97575356(c.1721-2647G>A), 97575435(c.1721-2726T>C), 97575528(c.1721-2819T>C), 97575588(c.1721-2879T>A), 97575596(c.1721-2887A>G), 97575606(c.1721-2897T>G), 97575613(c.1721-2904A>G), 97575614(c.1721-2905C>T), 97575638(c.1721-2929G>C), 97575918(c.1721-3209T>C), 97576134(c.1721-3425G>T), 97576161(c.1721-3452G>A), 97576214(c.1721-3505T>C), 97576477(c.1721-3768G>A), 97576567(c.1721-3858T>A), 97576591(c.1721-3882G>A), 97576641(c.1721-3932G>A), 97577167(c.1720+3812C>T), 97577216(c.1720+3763T>C), 97577226(c.1720+3753C>T), 97577284(c.1720+3695T>C), 97577322(c.1720+3657C>A), 97577423(c.1720+3556G>A), 97577465(c.1720+3514C>A), 97577470(c.1720+3509G>A), 97577538(c.1720+3441G>A), 97577628(c.1720+3351T>C), 97577850(c.1720+3129A>G), 97577876(c.1720+3103G>A), 97577893(c.1720+3086T>C), 97577916(c.1720+3063T>C), 97577965(c.1720+3014A>G), 97578146(c.1720+2833T>C), 97578207(c.1720+2772T>C), 97578434(c.1720+2545T>A), 97578461(c.1720+2518T>C), 97578496(c.1720+2483T>G), 97578536(c.1720+2443G>A), 97578579(c.1720+2400G>A), 97578773(c.1720+2206C>G), 97579275(c.1720+1704C>A), 97579672(c.1720+1307G>T), 97579703(c.1720+1276A>G), 97579931(c.1720+1048G>A), 97579966(c.1720+1013A>G), 97580191(c.1720+788A>G), 97580280(c.1720+699T>C), 97580300(c.1720+679A>G), 97580380(c.1720+599A>T), 97580383(c.1720+596T>C), 97580481(c.1720+498A>G), 97580518(c.1720+461T>C), 97580526(c.1720+453A>G), 97580533(c.1720+446T>C), 97580577(c.1720+402T>C), 97580624(c.1720+355C>A), 97580693(c.1720+286T>C), 97580749(c.1720+230A>C), 97580876(c.1720+103A>G), 97580882(c.1720+97A>G), 97580896(c.1720+83T>C), 97581191(c.1522-14C>T), 97581286(c.1522-109T>C), 97581368(c.1522-191T>A), 97581421(c.1522-244T>C), 97581590(c.1522-413C>T), 97581934(c.1522-757G>A), 97582468(c.1521+249T>G), 97582485(c.1521+232T>G), 97582510(c.1521+207C>T), 97582911(c.1368-41G>A), 97583267(c.1368-397C>T), 97583461(c.1367+347C>A), 97583482(c.1367+326A>G), 97583486(c.1367+322G>A), 97583490(c.1367+318G>A), 97583494(c.1367+314G>A), 97583498(c.1367+310G>A), 97583753(c.1367+55T>C), 97583954(c.1253-32T>G), 97583975(c.1253-53G>T), 97583978(c.1253-56A>G), 97584077(c.1253-155C>T), 97584819(c.1253-897T>C), 97584934(c.1253-1012G>A), 97585712(c.1252+1399T>A), 97585910(c.1252+1201G>T), 97586005(c.1252+1106G>A), 97586009(c.1252+1102C>G), 97586010(c.1252+1101C>G), 97586100(c.1252+1011A>G), 97586181(c.1252+930G>T), 97586197(c.1252+914T>C), 97586652(c.1252+459T>C), 97586655(c.1252+456A>G), 97586675(c.1252+436A>G), 97586925(c.1252+186T>G), 97586967(c.1252+144T>C), 97587038(c.1252+73T>C), 97587072(c.1252+39G>C), 97587608(c.1142-387G>T), 97587838(c.1141+402G>A), 97588046(c.1141+194A>T), 97588148(c.1141+92C>T), 97588673(c.1068-360C>T), 97588757(c.1068-444G>A), 97588777(c.1068-464T>C), 97588790(c.1068-477T>C), 97588869(c.1068-556T>C), 97588958(c.1068-645T>G), 97589086(c.1068-773G>T), 97589093(c.1068-780G>A), 97589162(c.1067+744T>C), 97589169(c.1067+737G>A), 97589214(c.1067+692G>A), 97589283(c.1067+623C>T), 97589287(c.1067+619T>C), 97589717(c.1067+189C>T), 97589808(c.1067+98T>C), 97589841(c.1067+65A>C), 97589859(c.1067+47C>T), 97589870(c.1067+36A>G), 97589879(c.1067+27A>G), 97589900(c.1067+6C>T), 97590015(c.971-13C>T), 97590066(c.971-64A>G), 97590277(c.971-275C>T), 97590346(c.970+208A>T), 97590373(c.970+181A>T), 97590493(c.970+61A>G), 97590682(c.878-36A>G), 97590705(c.878-59A>G), 97590748(c.878-102G>T), 97590847(c.878-201A>G), 97590885(c.878-239C>A), 97591095(c.877+110T>C), 97591101(c.877+104C>T), 97591111(c.877+94A>G), 97591132(c.877+73T>C), 97591194(c.877+11A>G), 97591423(c.722-63G>A), 97591499(c.722-139G>A), 97591546(c.722-186G>A), 97591658(c.722-298G>A), 97591712(c.722-352T>A), 97591785(c.722-425T>A), 97591798(c.722-438G>A), 97592075(c.722-715G>A), 97592115(c.722-755G>A), 97592237(c.722-877A>G), 97592268(c.722-908G>A), 97592461(c.722-1101C>T), 97592462(c.722-1102G>C), 97592612(c.722-1252G>A), 97592614(c.722-1254C>T), 97592657(c.722-1297T>A), 97592765(c.721+1243C>T), 97592800(c.721+1208A>G), 97592931(c.721+1077C>A), 97593041(c.721+967A>T), 97593137(c.721+871T>G), 97593167(c.721+841A>G), 97593389(c.721+619A>G), 97593495(c.721+513C>G), 97593510(c.721+498G>A), 97593542(c.721+466G>T), 97593981(c.721+27T>C), 97594372(c.559-202A>C), 97594452(c.559-282G>A), 97594681(c.559-511G>T), 97594692(c.559-522C>T), 97594772(c.559-602A>T), 97594842(c.559-672C>T), 97594854(c.559-684G>A), 97595000(c.559-830T>C), 97595052(c.559-882T>C), 97595096(c.559-926C>T), 97595235(c.559-1065A>G), 97595370(c.559-1200T>C), 97595453(c.559-1283G>A), 97595502(c.559-1332A>G), 97595605(c.559-1435A>T), 97595904(c.559-1734G>A), 97595978(c.558+1714A>G), 97595979(c.558+1713C>G), 97596003(c.558+1689A>G), 97596039(c.558+1653G>A), 97596073(c.558+1619T>G), 97596188(c.558+1504C>A), 97596243(c.558+1449T>C), 97596520(c.558+1172T>G), 97596786(c.558+906G>A), 97596827(c.558+865C>T), 97596833(c.558+859G>C), 97596873(c.558+819A>T), 97597162(c.558+530A>G), 97597258(c.558+434G>A), 97597321(c.558+371G>T), 97597340(c.558+352C>T), 97597421(c.558+271T>C), 97597553(c.558+139C>T), 97597668(c.558+24G>A), 97597678(c.558+14G>A), 97597885(c.477-112T>C), 97598187(c.477-414C>T), 97598296(c.477-523C>A), 97598299(c.477-526G>A), 97598309(c.477-536T>C), 97598612(c.477-839G>A), 97598667(c.477-894T>A), 97598671(c.477-898A>C), 97598935(c.477-1162C>T), 97599143(c.477-1370G>A), 97599144(c.477-1371T>C), 97599321(c.477-1548C>T), 97599387(c.477-1614C>G), 97599435(c.477-1662T>C), 97599462(c.477-1689C>T), 97599846(c.477-2073C>T), 97599909(c.476+2113A>G), 97599932(c.476+2090C>T), 97600332(c.476+1690A>C), 97600399(c.476+1623T>C), 97600454(c.476+1568C>G), 97600484(c.476+1538A>G), 97600524(c.476+1498A>C), 97600622(c.476+1400G>A), 97600626(c.476+1396C>T), 97600639(c.476+1383G>A), 97600794(c.476+1228T>C), 97600815(c.476+1207G>A), 97600913(c.476+1109T>C), 97600969(c.476+1053G>C), 97601015(c.476+1007A>G), 97601104(c.476+918G>C), 97601177(c.476+845T>C), 97601180(c.476+842G>A), 97601181(c.476+841T>C), 97601312(c.476+710G>A), 97601526(c.476+496A>G), 97601660(c.476+362T>C), 97601674(c.476+348G>C), 97601733(c.476+289A>G), 97601954(c.476+68T>C), 97602103(c.445-50C>G), 97602246(c.445-193A>G), 97602566(c.444+443G>T), 97602619(c.444+390T>G), 97602623(c.444+386A>G), 97602738(c.444+271G>A), 97602774(c.444+235A>G), 97602836(c.444+173T>C), 97602860(c.444+149A>G), 97602899(c.444+110A>C), 97602990(c.444+19C>A), 97603343(c.330-220C>T), 97603401(c.329+259A>G), 97603412(c.329+248C>A), 97603591(c.329+69G>A), 97603815(c.223-49G>A), 97603907(c.223-141G>C), 97604042(c.223-276G>A), 97604058(c.223-292A>C), 97604143(c.223-377C>T), 97604144(c.223-378T>G), 97604214(c.223-448G>A), 97604287(c.223-521G>A), 97604462(c.222+636A>G), 97604544(c.222+554C>T), 97604720(c.222+378T>C), 97604990(c.222+108G>T), 97605007(c.222+91A>G), 97605042(c.222+56T>C), 97605047(c.222+51C>T), 97605068(c.222+30C>T), 97605276(c.110-66T>C), 97605300(c.110-90G>A), 97605494(c.110-284G>A), 97605560(c.110-350A>G), 97605588(c.110-378G>A), 97605634(c.110-424A>G), 97605763(c.110-553C>T), 97605764(c.110-554A>G), 97605765(c.110-555C>T), 97605768(c.110-558G>A), 97605790(c.110-580A>G), 97605866(c.110-656A>G), 97605908(c.110-698A>T), 97605946(c.110-736A>G), 97605971(c.110-761T>C), 97605975(c.110-765G>C), 97606008(c.110-798T>C), 97606056(c.110-846T>C), 97606147(c.110-937G>A), 97606220(c.110-1010A>G), 97606244(c.110-1034T>A), 97606256(c.110-1046A>G), 97606302(c.110-1092G>A), 97606598(c.110-1388G>A), 97606605(c.110-1395C>G), 97606615(c.110-1405A>G), 97606815(c.110-1605C>G), 97606962(c.110-1752G>A), 97607219(c.110-2009C>T), 97607396(c.110-2186T>C), 97608055(c.109+2008T>C), 97608056(c.109+2007C>T), 97608527(c.109+1536T>C), 97608593(c.109+1470C>T), 97609284(c.109+779C>T), -1kb 97555882(c.5133G>A), 97555925(c.5090T>C), 97555981(c.5034C>T), 97556070(c.4945C>A), 97556098(c.4917T>C), 97556100(c.4915C>A), 97556165(c.4850A>G), 97556175(c.4840T>C), 97556193(c.4822A>T), 97556337(c.4678A>T), 97556338(c.4677C>A), 97556525(c.4490C>T), 97556553(c.4462A>G), 97556732(c.4283T>C), 97556762(c.4253C>A), 97557008(c.4007G>A), 97557294(c.3721G>T), 97557407(c.3608G>T), 97557452(c.3563C>T), 97557499(c.3516A>T), 97557534(c.3481T>A), 97557559(c.3456T>C), 97557653(c.3362A>C), 97557809(c.3206A>T), 97557818(c.3197A>T), 97557849(c.3166C>T), 97557859(c.3156G>A), 97557921(c.3094A>G), 97557955(c.3060T>C), 97557958(c.3057C>A), 97557976(c.3039T>C), 97557977(c.3038A>T), 97557996(c.3019T>A), 97558022(c.2993A>G), 97558034(c.2981A>G), 97558173(c.2842A>G), 97558212(c.2803T>C), 97558541(c.2474T>C), 97558554(c.2461A>G), 97558582(c.2433T>C), 97558603(c.2412A>T), 97558610(c.2405C>T), 97558830(c.2185A>C), 97558874(c.2141G>C), 97558891(c.2124A>C), 97558968(c.2047C>T), 97559005(c.2010G>A), 97559013(c.2002A>T), 97559026(c.1989T>G), 97559046(c.1969A>G), 97559058(c.1957T>A), 97559089(c.1926T>C), 97559224(c.1791T>C), 97559244(c.1771T>C), 97559260(c.1755A>G), 97559303(c.1712A>G), 97559323(c.1692C>T), 97559467(c.1548T>C), 97559494(c.1521T>C), 97559640(c.1375C>T), 97559656(c.1359A>C), 97559698(c.1317C>T), 97559757(c.1258T>C), 97559763(c.1252G>A), 97559816(c.1199A>G), 97559911(c.1104T>G), 97559939(c.1076A>G), 97560215(c.800A>G), 97560327(c.688C>T), 97560343(c.672C>T), 97560365(c.650G>A), 97560510(c.505C>G), 97560529(c.486G>C), 97560543(c.472A>G), 97560551(c.464C>A), 97560552(c.463A>G), 97560559(c.456A>T), 97560572(c.443C>G),
Insertions	+1kb 5'UTR CDS 3'UTR INTRON 97562176 (c.2630+402_2630+403insC), 97563721 (c.2407-151dupC), 97564370 (c.2407-800dupC), 97569884 (c.2236+317_2236+318insTGGCCGG), 97570452 (c.2034-49_2034-48insGAGAG), 97570874 (c.2033+29dupG), 97571417 (c.1870-351_1870-350insCCA), 97572022 (c.1869+538_1869+539insCGCAC), 97573605 (c.1721-897dupT), 97573607 (c.1721-899_1721-898insT), 97578075 (c.1720+2903_1720+2904insCCTTTC), 97579781 (c.1720+1197_1720+1198insCT), 97580125 (c.1720+853_1720+854insAA), 97587824 (c.1141+415dupT), 97588337 (c.1068-25_1068-24insATT), 97590020 (c.971-19_971-18insAT), 97595102 (c.559-933_559-932insT), 97596841 (c.558+850_558+851insA), 97598847 (c.477-1075_477-1074insT), 97604867 (c.222+230_222+231insGTTT), -1kb 97556051 (c.4963_4964insG), 97556527 (c.4487_4488insT), 97559909 (c.1105_1106insT),
Deletions	+1kb 97610932 (c.-765_-762delGGGA), 97611353 (c.-1187_-1183delTTTTT), 97611709 (c.-1547_-1539delGGCACACGA), 97612224 (c.-2055_-2054delTT), 5'UTR CDS 3'UTR INTRON 97561166 (c.2631-80delC), 97561836 (c.2630+739_2630+742delGTTT), 97562938 (c.2522-258_2522-252delGCTCTGT), 97565074 (c.2407-1512_2407-1504delGTGTATACA), 97565812 (c.2406+944_2406+946delAGC), 97565943 (c.2406+814_2406+815delAG), 97566021 (c.2406+736_2406+737delGG), 97566582 (c.2406+175_2406+176delAT), 97566927 (c.2336-99delT), 97571684 (c.1870-621_1870-618delTTCA), 97573998 (c.1721-1290delT), 97574594 (c.1721-1891_1721-1886delTGTTAT), 97578058 (c.1720+2920delA), 97578398 (c.1720+2578_1720+2580delATT), 97578853 (c.1720+2124_1720+2125delGT), 97580118 (c.1720+859_1720+860delTT), 97585173 (c.1253-1256_1253-1252delAAAGA), 97585316 (c.1253-1403_1253-1395delAGGTGTTCA), 97586349 (c.1252+761delC), 97588450 (c.1068-139_1068-138delGG), 97588934 (c.1068-624_1068-622delCTT), 97591011 (c.877+191_877+193delGTT), 97594337 (c.559-168delC), 97594700 (c.559-535_559-531delTTTTT), 97597993 (c.477-222_477-221delCT), 97598889 (c.477-1119_477-1117delTTT), 97598897 (c.477-1127_477-1125delTTT), 97600127 (c.476+1894delT), 97600571 (c.476+1450delA), 97600598 (c.476+1421_476+1423delGGC), 97601605 (c.476+415_476+416delTG), 97602077 (c.445-25delT), 97602433 (c.445-387_445-381delCATCAAT), 97602585 (c.444+416_444+423delGGAAGTCA), 97604021 (c.223-256delG), 97606348 (c.110-1139delT), 97609219 (c.109+842_109+843delAA), -1kb 97556612 (c.4399_4402delTACT), 97556617 (c.4394_4397delTTAC), 97557936 (c.3074_3078delTATTA), 97558408 (c.2605_2606delTT), 97560538 (c.*476delG),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	13
non-synonymous num	6
synonymous substitutions	97562683 (p.Ser842Ser), 97570245 (p.His731His), 97571041 (p.Gly632Gly), 97572636 (p.Glu598Glu), 97580998 (p.Glu567Glu), 97581097 (p.Ser534Ser), 97583921 (p.Gly418Gly), 97587142 (p.Pro407Pro), 97589920 (p.Ala351Ala), 97591248 (p.Ala278Ala), 97591290 (p.Leu264Leu), 97594027 (p.Ile234Ile), 97603078 (p.Glu125Glu),
non-synonymous substitutions	97561070 (p.Ser883Asn), 97581023 (p.Ser559Asn), 97581026 (p.Gly558Glu), 97594091 (p.Val213Ala), 97603067 (p.Arg129His), 97610111 (p.Leu21Val),
B6 transcript (ENSMUST00000029730)	MASGLPRFLQALPAEHGPEPLRTRVQEPDLQQWGLTGIRLRSYQLEGVNWLVQCFHCQNG CILGDEMGLGKTCQTIALLIYLVGRLNDEGPFLVLCPLSVLSNWKEEMERFAPGLSCVTY TGDKEERARLQQDLRQESGFHVLLTTYEICLKDASFLKSFSWSVLAVDEAHRLKNQSSLL HRTLSEFSAVFRLLLTGTPIQNSLRELYSLLCVVEPDLFCREQVEDFVQRYQDIEKESKS ASELHRLLQPFLLRRVKAQVATELPKKTEVVVYHGMSALQKKYYKAILMKDLDAFENETA KKVKLQNILTQLRKCVDHPYLFDGVEPEPFEVGEHLIEASGKLHLLDRLLAFLYSGGHRV LLFSQMTHMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGNQPIFVFLLSTRAGGV GMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASK LQLTNMVIEGGHFTPGAQKPSAEADFQLSEILKFGLDKLLSSEGSSMEDIDLKSILGETK DGQWTPDALPAAAAAGGGSLEPEEGSELESRSYENHMYLFEGRDYSKEPSKEDRKSFEQL VNLQKTLLEKTSHGGRTLRNKGSVLIPGLAEGPIKRKKILSPEELEDRRKKRQEAAAKRK RLMEEKRKEKEEAEHRKKMAWWESNGYQSFCLSSEDSELEDLEGGDESSAELAYEDLDST SINYVSGDVTHPQAGEEDAVIVHCVDDSGRWGRGGLFTALEVRSAEPRKIYELAGKMEDL SLGDVLLFPIDDKESRDKGQDLLALVVAQHRDRTNVLSGIKMAALEEGLKKIFLAAKKKK ASVHLPRIGHATKGFNWYGTERLIRKHLATRGIPTYIYYFPRSKARHSQPASSSSAPLVP *
MSMv4 transcript	MASGLPRFLQALPAEHGPEPVRTRVQEPDLQQWGLTGIRLRSYQLEGVNWLVQCFHCQNG CILGDEMGLGKTCQTIALLIYLVGRLNDEGPFLVLCPLSVLSNWKEEMERFAPGLSCVTY TGDKEERAHLQQDLRQESGFHVLLTTYEICLKDASFLKSFSWSVLAVDEAHRLKNQSSLL HRTLSEFSAVFRLLLTGTPIQNSLRELYSLLCAVEPDLFCREQVEDFVQRYQDIEKESKS ASELHRLLQPFLLRRVKAQVATELPKKTEVVVYHGMSALQKKYYKAILMKDLDAFENETA KKVKLQNILTQLRKCVDHPYLFDGVEPEPFEVGEHLIEASGKLHLLDRLLAFLYSGGHRV LLFSQMTHMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGNQPIFVFLLSTRAGGV GMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASK LQLTNMVIEGGHFTPGAQKPSAEADFQLSEILKFGLDKLLSSEGSSMEDIDLKSILGETK DGQWTPDALPAAAAAGGENLEPEEGSELESRSYENHMYLFEGRDYSKEPSKEDRKSFEQL VNLQKTLLEKTSHGGRTLRNKGSVLIPGLAEGPIKRKKILSPEELEDRRKKRQEAAAKRK RLMEEKRKEKEEAEHRKKMAWWESNGYQSFCLSSEDSELEDLEGGDESSAELAYEDLDST SINYVSGDVTHPQAGEEDAVIVHCVDDSGRWGRGGLFTALEVRSAEPRKIYELAGKMEDL SLGDVLLFPIDDKESRDKGQDLLALVVAQHRDRTNVLSGIKMAALEEGLKKIFLAAKKKK ASVHLPRIGHATKGFNWYGTERLIRKHLATRGIPTYIYYFPRNKARHSQPASSSSAPLVP *
homology	99.33 (901 / 901)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Chd1l (ENSMUSG00000028089)
Transcript ID	ENSMUST00000029730


..........GGGTGCGATGACCTTGGTGTATCTGACACCTCCCCTCTTGATCTGGTTGT
ACCTCAGGTCTGGTTCTGTGTGTTCCTGGAGAAGTCTGTATAACGGGATGGGTAAAGTCC
CTTAGTCATTAGAGGACTACTTCTGCATAGTGGGGCCAGCCTTGGTCCTTCTTAGGACAA
CGTGGCCATTAGTTATTTGTTATTTGTTTTTGTTTTTATCACACATAGATGTTCTGTTTG
AATGGCTACTCTTGGAATCTTGAGGGGATGGGGGGGGGGGAAGTTCTCTCGCACTTTATT
TTTAAGAAAAGGTTTAGTGCACCTTAGGCTGGTTTCAAACTTGTGTAGCTGAGGCTGACC
GTGAGCTCCGGTCCTCCTGCCGACAGCTCCCTAGGGCTAGGATTACAGGTGCTCACCCTC
ATGCCCCACCCGAGGGCTTGGTACATTCGAGGCAAGCATTCTGTTAACTGAGCTTTGATC
TTTATTATTTATTGACACCTTCCTGCTTTGCAGCCCAGGCTAGACTGAACTCAAAAATTC
TCCTGCCTCAGCCTCCCCAATGCTGAGATTACAGGAATGTACCACCAGGGTCTTTTCTTT
GAATGTATCTTGTCACTACACATTTTAAGAGATAAAGTTAATCTTATTTTAGTGTTTTTA
GTCATACATGAAGAAAAAGGTTAGATAATATAAGACGTATCTACCTTGTAGTACTAGTTT
TTAGGCATGTGCATCGTAACTGAAAACATGGAAAGCTGCTCAGGAATCGGACCCAAAGTT
TAAAGAAGACAGATAAGAAATTAAGGGGGGGTGGGGAGCTTGCTAAGTTTTGAGCCTGCT
GTTAGCTACCCAAGCAACCCAAGTTAGGAGTCAGAGCTTTTAGCAAAGGCAGCCTCTAGG
TCCTAGTCGCAGACGCACACTTAGACCAGAGTCTTCCGCACCTGCGTGCTAAGGAAGCGT
GGGAAGGCGCGCGAGCTGCGCCCTCTGGCGGCGGTGCGTTGTACTCCGCG
CGCGCGGGAGCGAAGGCGCGGGGCCTCTCGGGATGGCGAGCGGCTTGCCGCGCTTCCTGCAGGCGCTGCCGGCCGAACACGGGCCGGAGCCGGTTCGGACGCGGGTGCAGGAACCGGACTTACAGCAGTGGGGCTTGACTG
GTGAGCGGGCCGGGGACGCCCGGGG..........ACCGCTTCTGTTTTTTTATTTCCAG
GGATTCGTCTACGTTCTTACCAACTGGAAGGAGTCAATTGGCTAGTCCAGTGCTTCCATTGCCAGAATGGCTGCATCCTGGGAGATGAGATGGGCTTGGGGAAGACCTGCCAG
GTATCTGCTGTGGAATGAGCACAGC..........GAACTGATTTTCTCTTTTGTTCTAG
ACTATCGCTCTCCTCATTTACTTGGTGGGGAGACTGAATGATGAAGGGCCGTTTCTGGTTCTCTGTCCCTTGTCTGTTTTGAGCAACTGGAAAGAAGAGATGGAGAG
GTACGGAGTGAATCAGATGAACTTT..........TGTCCACCTCTTTTCTTTGCTCCAG
ATTTGCTCCAGGTCTTTCCTGTGTGACATACACAGGTGACAAGGAAGAGAGAGCCCACCTTCAGCAGGACCTAAGACAGGAGTCAGGTTTTCACGTGCTGCTGACGACATACGAG
GTAGCCCTCTGCTTCTCTACAAGAC..........TAACTTGTCTTCCTTACTTTTTCAG
ATTTGCTTGAAAGATGCCTCATTTCTAAAATC
GTGAGTAGATTGCGCCACCCCAGGA..........GCTGAAAGCGGATTCTCTCTCACAG
CTTCTCTTGGAGCGTTCTTGCTGTGGATGAAGCTCACAGATTGAAAAACCAGAGCTCCCTGCTGCACAGGACACTTTCAGAG
GTAAATTCACAGGATAGCCTGCTAC..........AATTTCGCTGCTTTGTGTGTTTGAG
TTCTCAGCGGTCTTCCGTCTCCTGCTCACCGGAACGCCCATCCAGAACAGCCTCCGGGAGCTCTACTCCCTCCTCTGTGCCGTGGAGCCTGACCTCTTCTGCAGAGAACAGGTGGAAGATTTCGTTCAGCGTTACCAGGACATTGAGAAAGAGTCCAAATCAG
GCAGGTCTCTCTCTTCCTAATCGTC..........TACGTATTTATCTTTCCTTACGCAG
CAAGCGAGCTGCACAGGCTCTTGCAGCCATTTCTCCTGAGGCGTGTGAAAGCTCAGGTAGCCACAGAGCTTCCCAAGAAGACAGAGGTGGTGGTGTACCACGGCATGTCCGCACTGCAGAAAAAGTACTACAAGGCCATCCTGATGAAAGACCTGG
GTACGCGGCTGTGGCTGTCAGAAGC..........TGTCTCCACGTCCTTGTGATTTCAG
ATGCATTTGAGAACGAGACAGCCAAGAAAGTCAAACTCCAGAACATCCTGACGCAGCTTCGGAAGTGTGTGGACCACCCGTATCTGTTCGATG
GTGAGTGGGGTAGTGCGCTCCCTCC..........ACTAGACGTGTTCTTTCTTTCCTAG
GTGTGGAACCAGAGCCCTTTGAAGTTGGAGAGCACCTGATTGAGGCCAGTGGGAAGCTTCACCTGCTGGACAGGCTGCTGGCATTTCTGTATTCTGG
GTAGGTGGTGGGTTTACCCTGGACA..........CTTTTTTTTTTTTCCTTCTTGCCAG
GGGCCATCGGGTTTTACTTTTCTCCCAGATGACACACATGCTGGATATTCTGCAGGACTATATGGACTACAGAG
GTGACTCCCCCTGCCCACTGCAGTA..........GATTAATTTTCTCCTCTGTGTCAAG
GCTACAGCTACGAGCGTGTGGATGGCTCCGTGAGAGGAGAGGAGAGACACCTGGCCATTAAGAACTTTGGAAACCAGCCAATTTTTGTTTTTCTCCTGAGCACCCGGGCAG
GTAGGTCACACAGGTCTTGATGAGA..........TGACACTTTCCCTACCCTGTTCCAG
GCGGAGTGGGCATGAACTTAACAGCGGCAGACACCGTCATTTTTGTCGACAGCGACTTCAACCCTCAGAATGACTTGCAGGCGGCCGCCAGAGCTCACCGAATTGGCCAGAACAA
GTGAGTGAGTTGGGCATCAATGGTT..........CTGCTGTTGTTTGACTCGCTCACAG
GTCTGTTAAAGTCATCCGGCTGATCGGCCGCGACACCGTGGAAGAAATCGTGTATAGGAAGGCGGCCTCCAAACTGCAGCTTACCAACATGGTCATAGAAGGAGGTCATTTCACACCAGGAGCCCAGAAACCTTCAGCCGAGGCCGACTTCCAG
GTTAGGATCTCTTCTGATCCGAAGG..........ACTTTTTTTGTTTTCTCTGTCCAAG
TTAAGTGAGATTCTCAAATTCGGCTTGGATAAACTGCTGTCCTCTGAGGGGAGCTCCATGGAGGATATAGACCTGAAGTCTATCCTGGGAGAAACCAAAGATGGCCAGTGGACCCCTGATGCTCTGCCCGCAGCAGCAGCAGCAGGAGGAGAAAACCTAGAACCAGAGGAAGGAAGTGAGTTGGAATCCAGGTCTTATG
GTGTGCGATCCATTCTGTGTTGACT..........CATTTCTTTGGTTTTGTGTTCTTAG
AAAACCACATGTACTTGTTTGAAGGTAGAGACTATTCTAAGGAGCCCAGTAAGGAAGACAGAAAGTCATTTGAACAGCTGGTGAATCTTCAGAAAACCCTTCTAGAGAAGACAAGCCATGGGGGCCGGACCCTCCGGAACAAAGGCAGC
GTGAGAGCCATTGCTTTTCTATAAC..........CTGACCGGAGGTCTTCGTCTCTCAG
GTTCTTATCCCAGGCCTTGCAGAAGGACCCATCAAAAGGAAGAAGATCCTTAGCCCAGAGGAGCTGGAGGACAGACGGAAGAAAAGACAGGAAGCAGCGGCCAAGAGGAAGAGACTGATGGAGGAGAAGAGGAAGGAGAAGGAGGAGGCTGAACACAGGAAGAA
GTTTGTCTGCATTAGATCAGAATGG..........CCCCTCTCTCTCTGATCTGGTGAAG
GATGGCCTGGTGGGAATCCAACGGTTACCAGTCCTTCTGCCTGTCCTCGGAGGACAGCGAGCTTGAGGACCTGGAGGGCGGAGATGAGTCTTCTGCCGAGCTGGCTTATGAAGATCTAGACTCAACCTCCATTAACTATGTTAGTGGCGACGTCACCCATCCCCAGGCTGGCGAAGAAGATGCTGTCATTGTGCACTGTGTAG
GTAAGAGTAGTGGGCGGGGACCCTG..........ATGGACATTTTCTCTCTCCTGTCAG
ATGATTCTGGCCGCTGGGGCAGAGGTGGCTTATTCACAGCTCTGGAAGTACGATCAGCTGAACCAAGAAAAATATACGAGCTGGCTGGGAAAATGGAAG
GTAAGAAGCAGAGAAGAGGAGGAGA..........TTTTTACTCTCTCTTAAAACCTCAG
ACCTGAGTTTGGGTGATGTCCTTCTATTTCCTATCGACGATAAAGAGTCACGAGACAAGGGGCAAGATCTG
GTAAGTAAAAAACCTGTCACATGCC..........TGACTGCCTTGCCTTACTCCTGCAG
TTGGCCTTGGTTGTGGCTCAGCACCGTGATCGCACCAATGTCCTGTCTGGCATTAAGATGGCAGCCCTAGAAGAGGGCCTGAAGAAGATATTTTTAGCAGCAAAGAAAAAGAAAG
GTAAGCCTTCCCTCTGTGCTGAGCT..........TATCATAATCTTTTCTTTTTAATAG
CAAGTGTTCATCTTCCACGAATTGGACATGCTACAAAGGGTTTTAACTGGTATGGTACCGAACGACTTATCCGGAAACATTTGGCTACACGAGGCATCCCAACTTACAT
GTATCCTTCTGTGGTCTGATTATAC..........ATGTTTTCCTTAACCATCTCTGCAG
ATACTACTTTCCCAGAAATAAGGCCCGCCATTCACAGCCTGCATCCTCCTCCTCAGCACCACTGGTTCCCTAGCAACCAGCCCAGCATTGGGTCCAGTTTTCAGCAACCAGTTAGATTCTTGCTCCCAGATTGACTGTTAGTTTTCAGGAAACAAGGCTATCTTTGGTCATATTCTCTGCTCTGGAATTTCTGGGCTAGTCTTTCCTGAATTCTAATTTTGTTGCTCTGGAAGTGTTAACTGTGATCCAGTACCTGTAATATAGGAACACACAGTGTATATGGGGAAGCCCTTTGGCTTCAGATTGCCTATGTTTGAATAATAATAATAATAGATGGCCTATTGTT
AATGGTTATGTTGCTTTTTTTCTTACCCTCCACCAGAGTCTTGTACAGAATGCAGGACTG
GCTGTGTGATTAGGGAGAGCTGAGGAAAGACAGGGCAGGGAGGCCTTGGGGGAAAGAAGC
TACTTCAGCCAACTCATGCCTTCAAATTGAGCCCAGGGCAGAGGCTGGGGACAGGTTTTC
CATGCATCCGATCCAGTGAGGAGCCCCTGCCCGTCTTTATACTGCTCATGGGATCTTGCA
GAAAGCTGATTGGCCTGGAGGCCTGCCAAGTGTGACTTTAGAAAACTCTGAGAATATCCT
TTCCTTCGCCTAGAAATCTAGTTTAGTTTCAGTATGTAGCTCCTGGCTGGCATAGCATGG
CCTGTGAGCGGTACTGAAGAAGGCCTGGGACAGAGAACTGCTGGAAAAGGAAATTTTGGA
GAGAAGGCCATATAAGCTGTGGTTCATCACGCCTTGTATATGAAGCCTTGGCTTTCAACA
GCTATCTTCAAGCTAAGAGTGGGCTCACATTAGGTGTCCATAAGTGGATGGGTGAAGAAA
AGAAAGTGCAGTATATTACAGGAATACAACATTATTCAGCCATAGGGAAAAATGAAATTT
TATCATTTTTAGCAAAGTGGAAGGGACTGGAGGTTTACTTAATAAACAGTATACAAGAAG
GTAAGTGCATTATTCTCTGTCAGGGGCAGAAGCTACAGAATACCATCCTAAAAGTGGAAT
AATGATTACAGACATGAGGGTATATGCAGCTGAATTTGATCAGTGCACCCTATCTACATG
TATGTAAACGGCACAGAGCTCCGGTTAGCATGCCAGCTAATGTGTGCTGCTGAAAAAATA
AATAGCTCTGTTAATCCCACAGATGTAAGGAGAAAGACCACCAACCCAAATTATGGCCAA
ATCAAGTCAAGCTTTATTTGTGTCCGTGGGAGCTGGCAGCTGTCTTTCCCTAGGGTGGGG
CTCAAGAGATCAGCGCTGAGCTGGCTTCCTAAGCCACCTT..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........GGGTGCGATGACCTTGGTGTATCTGACACCTCCCCTCTTGATCTGGTTGT ACCTCAGGTCTGGTTCTGTGTGTTCCTGGAGAAGTCTGTATAACGGGATGGGTAAAGTCC CTTAGTCATTAGAGGACTACTTCTGCATAGTGGGGCCAGCCTTGGTCCTTCTTAGGACAA CGTGGCCATTAGTTATTTGTTATTTGTTTTTGTTTTTATCACACATAGATGTTCTGTTTG AATGGCTACTCTTGGAATCTTGAGGGGATGGGGGGGGGGGAAGTTCTCTCGCACTTTATT TTTAAGAAAAGGTTTAGTGCACCTTAGGCTGGTTTCAAACTTGTGTAGCTGAGGCTGACC GTGAGCTCCGGTCCTCCTGCCGACAGCTCCCTAGGGCTAGGATTACAGGTGCTCACCCTC ATGCCCCACCCGAGGGCTTGGTACATTCGAGGCAAGCATTCTGTTAACTGAGCTTTGATC TTTATTATTTATTGACACCTTCCTGCTTTGCAGCCCAGGCTAGACTGAACTCAAAAATTC TCCTGCCTCAGCCTCCCCAATGCTGAGATTACAGGAATGTACCACCAGGGTCTTTTCTTT GAATGTATCTTGTCACTACACATTTTAAGAGATAAAGTTAATCTTATTTTAGTGTTTTTA GTCATACATGAAGAAAAAGGTTAGATAATATAAGACGTATCTACCTTGTAGTACTAGTTT TTAGGCATGTGCATCGTAACTGAAAACATGGAAAGCTGCTCAGGAATCGGACCCAAAGTT TAAAGAAGACAGATAAGAAATTAAGGGGGGGTGGGGAGCTTGCTAAGTTTTGAGCCTGCT GTTAGCTACCCAAGCAACCCAAGTTAGGAGTCAGAGCTTTTAGCAAAGGCAGCCTCTAGG TCCTAGTCGCAGACGCACACTTAGACCAGAGTCTTCCGCACCTGCGTGCTAAGGAAGCGT GGGAAGGCGCGCGAGCTGCGCCCTCTGGCGGCGGTGCGTTGTACTCCGCG
1	EXON 1	97,610,063	97,610,203	-	1	141	CGCGCGGGAGCGAAGGCGCGGGGCCTCTCGGGATGGCGAGCGGCTTGCCGCGCTTCCTGC AGGCGCTGCCGGCCGAACACGGGCCGGAGCCGGTTCGGACGCGGGTGCAGGAACCGGACT TACAGCAGTGGGGCTTGACTG
	INTRON 1 - 2	97,605,211	97,610,062			4,852	GTGAGCGGGCCGGGGACGCCCGGGG..........ACCGCTTCTGTTTTTTTATTTCCAG
2	EXON 2	97,605,098	97,605,210	1	0	113	GGATTCGTCTACGTTCTTACCAACTGGAAGGAGTCAATTGGCTAGTCCAGTGCTTCCATT GCCAGAATGGCTGCATCCTGGGAGATGAGATGGGCTTGGGGAAGACCTGCCAG
	INTRON 2 - 3	97,603,767	97,605,097			1,331	GTATCTGCTGTGGAATGAGCACAGC..........GAACTGATTTTCTCTTTTGTTCTAG
3	EXON 3	97,603,660	97,603,766	0	2	107	ACTATCGCTCTCCTCATTTACTTGGTGGGGAGACTGAATGATGAAGGGCCGTTTCTGGTT CTCTGTCCCTTGTCTGTTTTGAGCAACTGGAAAGAAGAGATGGAGAG
	INTRON 3 - 4	97,603,124	97,603,659			536	GTACGGAGTGAATCAGATGAACTTT..........TGTCCACCTCTTTTCTTTGCTCCAG
4	EXON 4	97,603,009	97,603,123	2	0	115	ATTTGCTCCAGGTCTTTCCTGTGTGACATACACAGGTGACAAGGAAGAGAGAGCCCACCT TCAGCAGGACCTAAGACAGGAGTCAGGTTTTCACGTGCTGCTGACGACATACGAG
	INTRON 4 - 5	97,602,054	97,603,008			955	GTAGCCCTCTGCTTCTCTACAAGAC..........TAACTTGTCTTCCTTACTTTTTCAG
5	EXON 5	97,602,022	97,602,053	0	2	32	ATTTGCTTGAAAGATGCCTCATTTCTAAAATC
	INTRON 5 - 6	97,597,774	97,602,021			4,248	GTGAGTAGATTGCGCCACCCCAGGA..........GCTGAAAGCGGATTCTCTCTCACAG
6	EXON 6	97,597,692	97,597,773	2	0	82	CTTCTCTTGGAGCGTTCTTGCTGTGGATGAAGCTCACAGATTGAAAAACCAGAGCTCCCT GCTGCACAGGACACTTTCAGAG
	INTRON 6 - 7	97,594,171	97,597,691			3,521	GTAAATTCACAGGATAGCCTGCTAC..........AATTTCGCTGCTTTGTGTGTTTGAG
7	EXON 7	97,594,008	97,594,170	0	1	163	TTCTCAGCGGTCTTCCGTCTCCTGCTCACCGGAACGCCCATCCAGAACAGCCTCCGGGAG CTCTACTCCCTCCTCTGTGCCGTGGAGCCTGACCTCTTCTGCAGAGAACAGGTGGAAGAT TTCGTTCAGCGTTACCAGGACATTGAGAAAGAGTCCAAATCAG
	INTRON 7 - 8	97,591,361	97,594,007			2,647	GCAGGTCTCTCTCTTCCTAATCGTC..........TACGTATTTATCTTTCCTTACGCAG
8	EXON 8	97,591,205	97,591,360	1	1	156	CAAGCGAGCTGCACAGGCTCTTGCAGCCATTTCTCCTGAGGCGTGTGAAAGCTCAGGTAG CCACAGAGCTTCCCAAGAAGACAGAGGTGGTGGTGTACCACGGCATGTCCGCACTGCAGA AAAAGTACTACAAGGCCATCCTGATGAAAGACCTGG
	INTRON 8 - 9	97,590,647	97,591,204			558	GTACGCGGCTGTGGCTGTCAGAAGC..........TGTCTCCACGTCCTTGTGATTTCAG
9	EXON 9	97,590,554	97,590,646	1	1	93	ATGCATTTGAGAACGAGACAGCCAAGAAAGTCAAACTCCAGAACATCCTGACGCAGCTTC GGAAGTGTGTGGACCACCCGTATCTGTTCGATG
	INTRON 9 - 10	97,590,003	97,590,553			551	GTGAGTGGGGTAGTGCGCTCCCTCC..........ACTAGACGTGTTCTTTCTTTCCTAG
10	EXON 10	97,589,906	97,590,002	1	2	97	GTGTGGAACCAGAGCCCTTTGAAGTTGGAGAGCACCTGATTGAGGCCAGTGGGAAGCTTC ACCTGCTGGACAGGCTGCTGGCATTTCTGTATTCTGG
	INTRON 10 - 11	97,588,314	97,589,905			1,592	GTAGGTGGTGGGTTTACCCTGGACA..........CTTTTTTTTTTTTCCTTCTTGCCAG
11	EXON 11	97,588,240	97,588,313	2	1	74	GGGCCATCGGGTTTTACTTTTCTCCCAGATGACACACATGCTGGATATTCTGCAGGACTA TATGGACTACAGAG
	INTRON 11 - 12	97,587,222	97,588,239			1,018	GTGACTCCCCCTGCCCACTGCAGTA..........GATTAATTTTCTCCTCTGTGTCAAG
12	EXON 12	97,587,111	97,587,221	1	1	111	GCTACAGCTACGAGCGTGTGGATGGCTCCGTGAGAGGAGAGGAGAGACACCTGGCCATTA AGAACTTTGGAAACCAGCCAATTTTTGTTTTTCTCCTGAGCACCCGGGCAG
	INTRON 12 - 13	97,583,923	97,587,110			3,188	GTAGGTCACACAGGTCTTGATGAGA..........TGACACTTTCCCTACCCTGTTCCAG
13	EXON 13	97,583,808	97,583,922	1	2	115	GCGGAGTGGGCATGAACTTAACAGCGGCAGACACCGTCATTTTTGTCGACAGCGACTTCA ACCCTCAGAATGACTTGCAGGCGGCCGCCAGAGCTCACCGAATTGGCCAGAACAA
	INTRON 13 - 14	97,582,871	97,583,807			937	GTGAGTGAGTTGGGCATCAATGGTT..........CTGCTGTTGTTTGACTCGCTCACAG
14	EXON 14	97,582,717	97,582,870	2	0	154	GTCTGTTAAAGTCATCCGGCTGATCGGCCGCGACACCGTGGAAGAAATCGTGTATAGGAA GGCGGCCTCCAAACTGCAGCTTACCAACATGGTCATAGAAGGAGGTCATTTCACACCAGG AGCCCAGAAACCTTCAGCCGAGGCCGACTTCCAG
	INTRON 14 - 15	97,581,178	97,582,716			1,539	GTTAGGATCTCTTCTGATCCGAAGG..........ACTTTTTTTGTTTTCTCTGTCCAAG
15	EXON 15	97,580,979	97,581,177	0	1	199	TTAAGTGAGATTCTCAAATTCGGCTTGGATAAACTGCTGTCCTCTGAGGGGAGCTCCATG GAGGATATAGACCTGAAGTCTATCCTGGGAGAAACCAAAGATGGCCAGTGGACCCCTGAT GCTCTGCCCGCAGCAGCAGCAGCAGGAGGAGAAAACCTAGAACCAGAGGAAGGAAGTGAG TTGGAATCCAGGTCTTATG
	INTRON 15 - 16	97,572,710	97,580,978			8,269	GTGTGCGATCCATTCTGTGTTGACT..........CATTTCTTTGGTTTTGTGTTCTTAG
16	EXON 16	97,572,561	97,572,709	1	0	149	AAAACCACATGTACTTGTTTGAAGGTAGAGACTATTCTAAGGAGCCCAGTAAGGAAGACA GAAAGTCATTTGAACAGCTGGTGAATCTTCAGAAAACCCTTCTAGAGAAGACAAGCCATG GGGGCCGGACCCTCCGGAACAAAGGCAGC
	INTRON 16 - 17	97,571,068	97,572,560			1,493	GTGAGAGCCATTGCTTTTCTATAAC..........CTGACCGGAGGTCTTCGTCTCTCAG
17	EXON 17	97,570,904	97,571,067	0	2	164	GTTCTTATCCCAGGCCTTGCAGAAGGACCCATCAAAAGGAAGAAGATCCTTAGCCCAGAG GAGCTGGAGGACAGACGGAAGAAAAGACAGGAAGCAGCGGCCAAGAGGAAGAGACTGATG GAGGAGAAGAGGAAGGAGAAGGAGGAGGCTGAACACAGGAAGAA
	INTRON 17 - 18	97,570,405	97,570,903			499	GTTTGTCTGCATTAGATCAGAATGG..........CCCCTCTCTCTCTGATCTGGTGAAG
18	EXON 18	97,570,202	97,570,404	2	1	203	GATGGCCTGGTGGGAATCCAACGGTTACCAGTCCTTCTGCCTGTCCTCGGAGGACAGCGA GCTTGAGGACCTGGAGGGCGGAGATGAGTCTTCTGCCGAGCTGGCTTATGAAGATCTAGA CTCAACCTCCATTAACTATGTTAGTGGCGACGTCACCCATCCCCAGGCTGGCGAAGAAGA TGCTGTCATTGTGCACTGTGTAG
	INTRON 18 - 19	97,569,200	97,570,201			1,002	GTAAGAGTAGTGGGCGGGGACCCTG..........ATGGACATTTTCTCTCTCCTGTCAG
19	EXON 19	97,569,101	97,569,199	1	1	99	ATGATTCTGGCCGCTGGGGCAGAGGTGGCTTATTCACAGCTCTGGAAGTACGATCAGCTG AACCAAGAAAAATATACGAGCTGGCTGGGAAAATGGAAG
	INTRON 19 - 20	97,566,830	97,569,100			2,271	GTAAGAAGCAGAGAAGAGGAGGAGA..........TTTTTACTCTCTCTTAAAACCTCAG
20	EXON 20	97,566,759	97,566,829	1	0	71	ACCTGAGTTTGGGTGATGTCCTTCTATTTCCTATCGACGATAAAGAGTCACGAGACAAGG GGCAAGATCTG
	INTRON 20 - 21	97,563,572	97,566,758			3,187	GTAAGTAAAAAACCTGTCACATGCC..........TGACTGCCTTGCCTTACTCCTGCAG
21	EXON 21	97,563,457	97,563,571	0	1	115	TTGGCCTTGGTTGTGGCTCAGCACCGTGATCGCACCAATGTCCTGTCTGGCATTAAGATG GCAGCCCTAGAAGAGGGCCTGAAGAAGATATTTTTAGCAGCAAAGAAAAAGAAAG
	INTRON 21 - 22	97,562,688	97,563,456			769	GTAAGCCTTCCCTCTGTGCTGAGCT..........TATCATAATCTTTTCTTTTTAATAG
22	EXON 22	97,562,579	97,562,687	1	2	109	CAAGTGTTCATCTTCCACGAATTGGACATGCTACAAAGGGTTTTAACTGGTATGGTACCG AACGACTTATCCGGAAACATTTGGCTACACGAGGCATCCCAACTTACAT
	INTRON 22 - 23	97,561,088	97,562,578			1,491	GTATCCTTCTGTGGTCTGATTATAC..........ATGTTTTCCTTAACCATCTCTGCAG
23	EXON 23	97,560,742	97,561,087	2	-	346	ATACTACTTTCCCAGAAATAAGGCCCGCCATTCACAGCCTGCATCCTCCTCCTCAGCACC ACTGGTTCCCTAGCAACCAGCCCAGCATTGGGTCCAGTTTTCAGCAACCAGTTAGATTCT TGCTCCCAGATTGACTGTTAGTTTTCAGGAAACAAGGCTATCTTTGGTCATATTCTCTGC TCTGGAATTTCTGGGCTAGTCTTTCCTGAATTCTAATTTTGTTGCTCTGGAAGTGTTAAC TGTGATCCAGTACCTGTAATATAGGAACACACAGTGTATATGGGGAAGCCCTTTGGCTTC AGATTGCCTATGTTTGAATAATAATAATAATAGATGGCCTATTGTT
	3' upstream sequence						AATGGTTATGTTGCTTTTTTTCTTACCCTCCACCAGAGTCTTGTACAGAATGCAGGACTG GCTGTGTGATTAGGGAGAGCTGAGGAAAGACAGGGCAGGGAGGCCTTGGGGGAAAGAAGC TACTTCAGCCAACTCATGCCTTCAAATTGAGCCCAGGGCAGAGGCTGGGGACAGGTTTTC CATGCATCCGATCCAGTGAGGAGCCCCTGCCCGTCTTTATACTGCTCATGGGATCTTGCA GAAAGCTGATTGGCCTGGAGGCCTGCCAAGTGTGACTTTAGAAAACTCTGAGAATATCCT TTCCTTCGCCTAGAAATCTAGTTTAGTTTCAGTATGTAGCTCCTGGCTGGCATAGCATGG CCTGTGAGCGGTACTGAAGAAGGCCTGGGACAGAGAACTGCTGGAAAAGGAAATTTTGGA GAGAAGGCCATATAAGCTGTGGTTCATCACGCCTTGTATATGAAGCCTTGGCTTTCAACA GCTATCTTCAAGCTAAGAGTGGGCTCACATTAGGTGTCCATAAGTGGATGGGTGAAGAAA AGAAAGTGCAGTATATTACAGGAATACAACATTATTCAGCCATAGGGAAAAATGAAATTT TATCATTTTTAGCAAAGTGGAAGGGACTGGAGGTTTACTTAATAAACAGTATACAAGAAG GTAAGTGCATTATTCTCTGTCAGGGGCAGAAGCTACAGAATACCATCCTAAAAGTGGAAT AATGATTACAGACATGAGGGTATATGCAGCTGAATTTGATCAGTGCACCCTATCTACATG TATGTAAACGGCACAGAGCTCCGGTTAGCATGCCAGCTAATGTGTGCTGCTGAAAAAATA AATAGCTCTGTTAATCCCACAGATGTAAGGAGAAAGACCACCAACCCAAATTATGGCCAA ATCAAGTCAAGCTTTATTTGTGTCCGTGGGAGCTGGCAGCTGTCTTTCCCTAGGGTGGGG CTCAAGAGATCAGCGCTGAGCTGGCTTCCTAAGCCACCTT..........

Sequence Detail Report

Gene Symbol (Gene ID)	Chd1l (ENSMUSG00000028089)
Transcript ID	ENSMUST00000029730

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 901 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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