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Target CDS Information

Gene Symbol (Gene ID) Lmna (ENSMUSG00000028063)
Cross Reference
CCDS CCDS38483.1
EMBL AK004619, AK147150, AK149998, ...show all
Fantom 1200006N04, 4833421L13, G530116F06, ...show all
GO GO:0005198, GO:0005515, GO:0005634, ...show all
goslim_goa GO:0003674, GO:0005198, GO:0005575, ...show all
MGI_trans_name Lmna-003
OTTP OTTMUSP00000039299
OTTT OTTMUST00000075094
PDB 1UFG
protein_id AAH15302.1, AAH94020.1, ABI16251.1, ...show all
Reactome R-MMU-109581, R-MMU-111465, R-MMU-1640170, ...show all
RefSeq_mRNA NM_019390.3
RefSeq_peptide NP_062263
UCSC uc008pvk.3
UniParc UPI0000023EF0
Uniprot/SWISSPROT P48678
Vega_transcript Lmna-003, OTTMUST00000075094
Vega_translation 187570, OTTMUSP00000039299
Definition protein_id:ENSMUSP00000040265
translation:
MGNAEGRNTKKEGDLLAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVAKL
EAALGEAKKQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNG
KQREFESRLADALQELRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEEL
QQSRIRIDSLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARM
QQQLDEYQELLDIKLALDMEIHAYRKLLEGEEERLRLSPSPTSQRSRGRASSHSSQSQGG
GSVTKKRKLESSESRSSFSQHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIRRQ
NGDDPLMTYRFPPKFTLKAGQVVTIWASGAGATHSPPTDLVWKAQNTWGCGSSLRTALIN
STGEEVAMRKLVRSLTMVEDNEDDDEDGEELLHHHRVSGSRR

Chromosome 3
Length
Position(start - end)
9,958
88,483,297 - 88,493,256
Orient to Chromosome minus
Link Location : (3:88483297-88493256)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Lmna (ENSMUSG00000028063)
Transcript ID ENSMUST00000036252
Reports
substitution
cSNPs3
Insertion14
Deletion24
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num3
non-synonymous num0
synonymous substitutions 88486850 (p.Thr87Thr), 88488317 (p.Thr45Thr), 88488356 (p.Lys32Lys),
non-synonymous substitutions
B6 transcript
(ENSMUST00000036252)
MGNAEGRNTKKEGDLLAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVAKL
EAALGEAKKQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNG
KQREFESRLADALQELRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEEL
QQSRIRIDSLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARM
QQQLDEYQELLDIKLALDMEIHAYRKLLEGEEERLRLSPSPTSQRSRGRASSHSSQSQGG
GSVTKKRKLESSESRSSFSQHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIRRQ
NGDDPLMTYRFPPKFTLKAGQVVTIWASGAGATHSPPTDLVWKAQNTWGCGSSLRTALIN
STGEEVAMRKLVRSLTMVEDNEDDDEDGEELLHHHRVSGSRR*
MSMv4 transcript
MGNAEGRNTKKEGDLLAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVAKL
EAALGEAKKQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNG
KQREFESRLADALQELRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEEL
QQSRIRIDSLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARM
QQQLDEYQELLDIKLALDMEIHAYRKLLEGEEERLRLSPSPTSQRSRGRASSHSSQSQGG
GSVTKKRKLESSESRSSFSQHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIRRQ
NGDDPLMTYRFPPKFTLKAGQVVTIWASGAGATHSPPTDLVWKAQNTWGCGSSLRTALIN
STGEEVAMRKLVRSLTMVEDNEDDDEDGEELLHHHRVSGSRR*
homology100.00 (463 / 463)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Lmna (ENSMUSG00000028063)
Transcript ID ENSMUST00000036252
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GAAACCAAGTAGTGGGCAGTGGTTTTCTTGGATGGCTGCAGAATCCAGAG
CTGGTGTAAGCTCTGAGAGTAGTTAAGGTGGTAGATTCCTTAGGCCTTTGTTGTTTTGAT
GGGGTCTCCCAGCAGCACAGAGTGAGGACTTCTAAAAGGACTGACTGTGTATCCCCATTG
CTCTCTGCAGCCCATGTGCCTCCTACGACTTCCTTCTTTCTCCTTCCTCACATTCCCGAA
CCATCTCCTCCCTTCTCTTTTTGTCCTGGAGTTAGACCCAGGACATTACACCCCAGCCTC
TAGGTCAGTTTCTTTACTCAGTGTCCCTGAGTGTTCTGAGTGTACTCCGGTGACTTGGTG
GGTAGGTTTGTAGTGTCTAGGGCTTTCCTGTCTACATCTGTGAGAGAAAGTGCAGAAATT
AGTCCAAAGGTTAGTCCAGAAGCCCTGAACACTAAACTTTAAGGTATTAAGAGGACATAT
ACAAAAACTCAAAGATCCCGCTGGTAAAAACTGGGCTGAGGTGGAGCTCTGAACATGCGG
AGAACGGGCGGGCGGGGTTGCTGTGCTAGGCCAGATATAGAAAGCTTTCTGTATTTAATA
CACAGTACATGCATCATTCATGTCTACATAATTAAGATAAAGGAAGCTGCATTGTTAATG
GGAAAAAAAATAGGGTCTGGGAATGTAGTGTGCCTAGCATTTTCGAACTTCGGGGTTTGG
GTTTGATCCCAGCATCTCACAAACCACGTGTAATCCCAGCACTTGGAAGGTAGAAGCCGG
AGGATCAGAAGTTTAAGGTCATTCTTGACTACTTAGCAAATTCGGGGCACCCTAGGATAC
CTGAGACCCTGTCATGAATAAAAATAAATAATAAATAAACCAATATGGGTCTAGGTTGAG
CAGCAGCTTGGGCAGGGTAGGGCCGGAAGTTAGCCAGGTAGAGGGTTGCAGTCCCAGGAG
GACCCTGGCTGGGAGCAGCACCTCAGTCCCCTGCCCAACCACAGGGGGCC
1 EXON 1 88,493,237 88,493,312 - 2 76
ACCGGGTCTTTCCGGAACTCCTGAGGGCGCAAGGCCTTGCTCTCTCTGGCCCAGCCATGG
GGAACGCGGAGGGCCG
INTRON 1 - 2 88,488,432 88,493,236 4,805
GTGAGGCAGGCTGCAGGCGGGCGGG..........CTGAAACCTGCTTTTCTTTTTCTAG
2 EXON 2 88,488,275 88,488,431 2 0 157
CAACACCAAGAAGGAGGGGGACTTGTTGGCTGCGCAGGCCCGGCTCAAGGACCTCGAGGC
TCTTCTCAACTCCAAAGAAGCTGCCCTGAGCACTGCTCTCAGTGAGAAGCGCACGTTGGA
GGGCGAGCTCCATGACCTGCGGGGGCAGGTAGCCAAG
INTRON 2 - 3 88,486,934 88,488,274 1,341
GTAGGCCGCTGTCCTGTGACCCCAG..........ATGAACTTGGCTTTCTCCCTCTCAG
3 EXON 3 88,486,808 88,486,933 0 0 126
CTTGAGGCGGCCCTGGGAGAGGCTAAGAAGCAGCTTCAGGATGAGATGCTGAGGCGAGTG
GATGCTGAGAACAGGCTACAGACCCTGAAGGAGGAGCTTGACTTCCAGAAGAACATTTAC
AGCGAG
INTRON 3 - 4 88,486,631 88,486,807 177
GTAAGCGTCCCGCTGTACAGGTCTT..........AAGTGTCTCCCCTTAACCCTTTCAG
4 EXON 4 88,486,460 88,486,630 0 0 171
GAACTGCGTGAGACCAAGCGCCGGCATGAGACGCGGCTTGTGGAGATCGATAACGGGAAG
CAGCGAGAGTTTGAGAGCCGGCTGGCAGATGCCCTGCAGGAGCTGCGGGCTCAGCATGAG
GACCAGGTGGAACAGTATAAGAAGGAGCTAGAAAAGACATACTCCGCCAAG
INTRON 4 - 5 88,486,330 88,486,459 130
GTGCTGGCCTCATCCTGTCCTCTCC..........TCTCATAACTGTGTGCTCCCTGCAG
5 EXON 5 88,486,204 88,486,329 0 0 126
CTGGATAATGCCAGGCAGTCTGCTGAGAGGAACAGCAACCTCGTGGGGGCTGCCCATGAG
GAACTGCAGCAGTCTCGAATCCGCATTGACAGCCTCTCGGCCCAGCTCAGCCAGCTCCAA
AAGCAG
INTRON 5 - 6 88,485,148 88,486,203 1,056
GTGACCCTCAGTTTACCCCTCCCAC..........AGACCCTTTGTCTTTCCCGCCCCAG
6 EXON 6 88,484,927 88,485,147 0 2 221
TTGGCAGCCAAGGAGGCAAAGCTGCGTGACCTGGAGGACTCGCTGGCCCGTGAGCGCGAT
ACCAGCCGGCGCCTGCTGGCTGAGAAAGAGCGAGAGATGGCGGAGATGCGGGCGAGGATG
CAGCAGCAGCTGGACGAGTACCAGGAGCTGCTGGACATCAAGCTGGCCCTGGACATGGAG
ATCCATGCCTATCGAAAGCTGCTGGAGGGCGAGGAGGAGAG
INTRON 6 - 7 88,484,838 88,484,926 89
GTGAACTAGGAGGGGTCTACAGAAC..........CGCACCGTGTCTCCACCTTCCCCAG
7 EXON 7 88,484,615 88,484,837 2 0 223
GCTGCGCCTGTCCCCCAGCCCTACCTCGCAGCGCAGCCGTGGCCGCGCCTCCTCCCACTC
ATCCCAGTCTCAGGGTGGAGGCAGCGTCACCAAAAAGCGCAAGCTGGAGTCTTCCGAGAG
CCGGAGCAGCTTCTCGCAGCATGCTCGCACTAGCGGGCGTGTGGCGGTAGAGGAAGTCGA
TGAAGAGGGAAAGTTCGTGCGGCTGCGCAACAAGTCCAACGAG
INTRON 7 - 8 88,484,155 88,484,614 460
GTGGGCCTGTGGACCAGGGTGGTCT..........TCCTCCTTCCTCCACCCTACTTCAG
8 EXON 8 88,484,047 88,484,154 0 0 108
GACCAGTCCATGGGCAACTGGCAGATCAGGCGTCAGAATGGTGACGATCCTTTGATGACC
TATCGCTTCCCACCGAAGTTCACCCTAAAGGCTGGGCAGGTGGTGACG
INTRON 8 - 9 88,483,947 88,484,046 100
GTGAGTGGAAGGGCACTTGGGACTC..........CATCTCTTAAACCATCTTTTCCCAG
9 EXON 9 88,483,827 88,483,946 0 0 120
ATCTGGGCTTCAGGAGCTGGGGCCACCCATAGCCCCCCTACTGACTTGGTGTGGAAGGCG
CAGAACACCTGGGGCTGTGGGAGCAGCCTTCGCACCGCTCTCATCAACTCCACTGGAGAA
INTRON 9 - 10 88,483,414 88,483,826 413
GTGAGTATGTTGCAGCCGGTAGCTT..........TGGGCCTGGGCTTATGTCCCCACAG
10 EXON 10 88,483,206 88,483,413 0 - 208
GAAGTGGCCATGCGCAAGCTGGTGCGCTCACTGACCATGGTTGAGGACAATGAGGATGAC
GACGAGGATGGAGAAGAGCTCCTCCATCACCACCGTGTGAGTGGCAGCCGCCGCTGAGGC
CCAGCCCACAAGGGTAGCCCTGCCAGCCTAGGGCAGCTCTCCCACCTCCATGCCAAAGTC
TTTTCATTAAAGAATGTTTTGGAATGCC
3' upstream sequence
ACTTGCTGCCCTGGCCTTTCTTCTCTCTCCTCCCTCTACCTTGAACAGGGAACCCGGGTG
TCTGGTAAGGAAGGGAGTGGGGACTTGCTGATGCCATGGATACTCCACGGTGGCAGTGGA
CAGGGTTCTGGATTTGTGTCCTGGGAAGGGGCTGGGAGGACAGAGGTGGCCCCAGCCCTG
CCTCTTTTTCTCACTCCCATTGCATGCACACTTCTCTCCTCTCTCCTTCCACCCTATTGC
ATGCTTCTCCTCAGATTTCCCCACAACAATGTTCTCTTTCCTTCCTGTCCCCTCACAAAT
TAAGTCTCTCCATCTTTGCTCTTCCTCTTGATTGCCCCATAAGTGTCTAAGATTCAGGAG
AGAGTTAAAGCCACAGCTCTTTATTTCGAAGGCTTCCTGGCTATTTCCCCCATCATGCCC
TTCCTCCCAGCCACAGGTCTCCCAAGTCCCCATCACTTGGTTGTCTGGGTACAGACAGAG
GTCACCTTCCTGCCCAATGGCCAGGAAGCTCCAAGAGCCCACAGCCTAGGTGCCGGTCCT
AAGAAGTCAGTCCCAAACTCGCTGTCCCTCCTGAGCCTTGTCTCCCTTCCCAGGGTTCCC
ACTGCAGCGGCTCGGGGGACCCCGCTGAGTACAACCTGCGCTCACGCACCGTGCTGTGCG
GGACGTGTGGGCAGCCTGCTGACAAGGCTGCCGGTGGAGCGGGAGCCCAGGTGGGCGGAT
CCATCTCCTCTGGCTCTTCTGCCTCCAGTGTCACAGTCACTCGAAGCTTCCGCAGTGTGG
GGGGCAGTGGGGGTGGCAGCTTCGGGGACAACCTAGTCACCCGCTCCTACCTCCTGGGCA
ACTCCAGTCCCCGGAGCCAGGTGAGTCATCTCTGCCCTACAGCAGGACACTGCTCACTGA
GCAGCAGGGCAGGGCAGCCCAAGGGAGTGGGGTCCCCCTTCTTGCAGTCCCTCTTGCATC
CTGCCCCTCCTGTCTGAACCCCAGACTCGAGGTCAGGGCA..........

Sequence Detail Report

Gene Symbol (Gene ID) Lmna (ENSMUSG00000028063)
Transcript ID ENSMUST00000036252
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 463 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information