MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Nrn1 (ENSMUSG00000039114)

Cross Reference

CCDS	CCDS26455.1
EMBL	AK161859, AY150584, BC035531
Fantom	6330437A07
GO	GO:0007409, GO:0030054, GO:0031225, ...show all
goslim_goa	GO:0000902, GO:0005575, GO:0005623, ...show all
MGI_trans_name	Nrn1-001
OTTP	OTTMUSP00000034720
OTTT	OTTMUST00000068597
protein_id	AAH35531.1, AAN84528.1, BAE36610.1
RefSeq_mRNA	NM_153529.2

RefSeq_peptide	NP_705757
UCSC	uc007qcm.3
UniParc	UPI0000027775
Uniprot/SWISSPROT	Q8CFV4
Vega_transcript	Nrn1-001, OTTMUST00000068597
Vega_translation	214359, OTTMUSP00000034720

Definition

protein_id:ENSMUSP00000040900
translation:

MGLKLNGRYISLILAVQIAYLVQAVRAAGKCDAVFKGFSDCLLKLGDSMANYPQGLDDKT
NIKTVCTYWEDFHSCTVTALTDCQEGAKDMWDKLRKESKNLNIQGSLFELCGSSNGAAGS
LLPALSVLLVSLSAALATWFSF

Chromosome

Length
Position(start - end)

7,661
36,726,628 - 36,734,290

Orient to Chromosome

minus

Link

Location : (13:36726628-36734290)
/

Detail Map

name	Nrn1 (ENSMUSG00000039114)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Nrn1 note : neuritin 1 [Source:MGI Symbol;Acc:MGI:1915654]

name	Nrn1 (ENSMUSG00000039114)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000037623

name	Nrn1 (ENSMUSG00000039114)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000122286

name	Nrn1 (ENSMUSG00000039114) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS26455.1 Uniprot/SWISSPROT:Q8CFV4 RefSeq_peptide:NP_705757 RefSeq_mRNA:NM_153529.2 Vega_transcript:Nrn1-001 Vega_transcript:OTTMUST00000068597 UCSC:uc007qcm.3 Fantom:6330437A07 EMBL:AK161859 EMBL:AY150584 EMBL:BC035531 GO:GO:0007409 GO:GO:0030054 GO:GO:0031225 GO:GO:0032281 GO:GO:0045202 MGI_trans_name:Nrn1-001 Vega_translation:214359 Vega_translation:OTTMUSP00000034720 goslim_goa:GO:0000902 goslim_goa:GO:0005575 goslim_goa:GO:0005623 goslim_goa:GO:0005886 goslim_goa:GO:0008150 goslim_goa:GO:0030154 goslim_goa:GO:0043234 goslim_goa:GO:0048856 protein_id:AAH35531.1 protein_id:AAN84528.1 protein_id:BAE36610.1 OTTP:OTTMUSP00000034720 OTTT:OTTMUST00000068597 UniParc:UPI0000027775
definition	note : transcript_id=ENSMUST00000037623 protein_id : ENSMUSP00000040900 translation : MGLKLNGRYISLILAVQIAYLVQAVRAAGKCDAVFKGFSDCLLKLGDSMANYPQGLDDKTNIKTVCTYWEDFHSCTVTALTDCQEGAKDMWDKLRKESKNLNIQGSLFELCGSSNGAAGSLLPALSVLLVSLSAALATWFSF

name	Nrn1 (ENSMUSG00000039114) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	RefSeq_peptide_predicted:XP_006516801.1 Vega_transcript:Nrn1-002 Vega_transcript:OTTMUST00000068625 Uniprot/SPTREMBL:D3Z4E2 EMBL:AC156802 GO:GO:0007409 GO:GO:0032281 MGI_trans_name:Nrn1-002 Vega_translation:214360 Vega_translation:OTTMUSP00000034739 goslim_goa:GO:0000902 goslim_goa:GO:0005575 goslim_goa:GO:0005623 goslim_goa:GO:0005886 goslim_goa:GO:0008150 goslim_goa:GO:0030154 goslim_goa:GO:0043234 goslim_goa:GO:0048856 OTTP:OTTMUSP00000034739 OTTT:OTTMUST00000068625 UniParc:UPI0001611541
definition	note : transcript_id=ENSMUST00000122286 protein_id : ENSMUSP00000113721 translation : MEDCTARRDRVFAGGSVERQGGSEEKKGNKGDEGAYLVQAVRAAGKCDAVFKGFSDCLLKLGDSMANYPQGLDDKTNIKTVCTYWEDFHSCTVTALTDCQEGAKDMWDKLRKESKNLNIQGSLFELCGSSNGAAGSLLPALSVLLVSLSAALATWFSF

name
type	misc_feature
link
xref
definition	note : contig AC156802.7 1..166542(-1)

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Nrn1 (ENSMUSG00000039114)
Transcript ID	ENSMUST00000037623

Reports
substitution
cSNPs	1
Insertion	9
Deletion	21
SNPs	+1kb 36734481(c.-191T>A), 36734736(c.-446T>C), 36734972(c.-682C>T), 36735049(c.-759T>C), 36736136(c.-1846A>G), 36736211(c.-1921C>T), 36736559(c.-2269T>C), 36736596(c.-2306G>T), 36736738(c.-2448G>A), 36736769(c.-2479G>A), 36736811(c.-2521G>A), 36737042(c.-2752A>G), 36737082(c.-2792T>C), 36737288(c.-2998T>C), 36737338(c.-3048C>T), 36737345(c.-3055G>A), 36737424(c.-3134A>G), 36737458(c.-3168T>A), 36737732(c.-3442T>C), 36738105(c.-3815G>A), 36738925(c.-4635C>G), 5'UTR 36734469(c.-179A>G), CDS 36730214(c.93T>C), 3'UTR 36725948(c.680A>G), 36726551(c.77T>G), INTRON 36727118(c.201-262T>G), 36727622(c.201-766A>C), 36727736(c.201-880A>G), 36728198(c.201-1342A>T), 36728428(c.201-1572G>T), 36728454(c.201-1598C>T), 36728633(c.200+1474T>G), 36728640(c.200+1467G>A), 36729148(c.200+959A>G), 36729327(c.200+780A>G), 36729562(c.200+545G>A), 36729642(c.200+465A>G), 36729772(c.200+335C>T), 36729818(c.200+289A>T), 36729865(c.200+242G>A), 36730543(c.56-292G>A), 36731409(c.56-1158C>T), 36731718(c.56-1467G>A), 36731880(c.56-1629T>G), 36732530(c.55+1706G>T), 36732847(c.55+1389G>A), 36732889(c.55+1347A>G), 36733135(c.55+1101G>A), 36733390(c.55+846G>A), 36734228(c.55+8G>A), -1kb 36720714(c.5914G>A), 36720745(c.5883G>A), 36720784(c.5844C>A), 36720845(c.5783G>A), 36720882(c.5746A>C), 36721009(c.5619T>C), 36721186(c.5442C>T), 36721314(c.5314G>A), 36721335(c.5293G>A), 36721416(c.5212A>G), 36721510(c.5118G>A), 36721566(c.5062A>G), 36721779(c.4849T>C), 36721871(c.4757G>A), 36721902(c.4726A>G), 36721970(c.4658A>C), 36722027(c.4601G>A), 36722050(c.4578C>T), 36722111(c.4517T>C), 36722310(c.4318C>T), 36722413(c.4215A>G), 36722423(c.4205G>A), 36722450(c.4178G>T), 36722474(c.4154C>T), 36722564(c.4064A>G), 36722565(c.4063C>T), 36723175(c.3453G>T), 36723310(c.3318C>G), 36723507(c.3121G>C), 36723530(c.3098T>C), 36723558(c.3070A>G), 36723609(c.3019G>T), 36723634(c.2994C>T), 36723835(c.2793G>A), 36724014(c.2614C>T), 36724228(c.2400G>A), 36724503(c.2125C>A), 36724597(c.2031C>T), 36724887(c.1741C>T), 36724996(c.1632T>C), 36725036(c.1592G>A), 36725072(c.1556G>C), 36725319(c.1309C>T), 36725348(c.1280A>G), 36725371(c.1257T>C), 36725521(c.1107T>C), 36725523(c.1105C>T), 36725615(c.1013G>C),
Insertions	+1kb 36738447 (c.-4158_-4157insA), 5'UTR CDS 3'UTR 36725756 (c.871dupA), 36726453 (c.174_175insTTCTTC), INTRON 36727347 (c.201-493_201-492dupCG), 36729159 (c.200+947_200+948insAAC), 36729177 (c.200+929dupA), 36729183 (c.200+923dupA), 36730005 (c.200+101_200+102insA), -1kb 36724174 (c.2453_*2454insCC),
Deletions	+1kb 36734495 (c.-211_-206delCTCCCC), 36734593 (c.-305_-304delAA), 36736332 (c.-2047_-2043delCCCCA), 36738844 (c.-4556_-4555delAT), 36738873 (c.-4585_-4584delAG), 36738912 (c.-4624_-4623delGA), 5'UTR CDS 3'UTR 36726352 (c.275delT), INTRON 36728222 (c.201-1367delG), 36728412 (c.201-1562_201-1557delCCGCAA), 36728849 (c.200+1256_200+1257delAT), 36729159 (c.200+947delA), 36729565 (c.200+541delG), 36730844 (c.56-602_56-594delTAATAATAT), 36731087 (c.56-838_56-837delAC), 36733300 (c.55+934_55+935delCA), -1kb 36721349 (c.5278delC), 36722079 (c.4544_4548delCCCTC), 36722703 (c.3923_3924delGG), 36723866 (c.2761delC), 36724090 (c.2534_2537delGGGT), 36724317 (c.2310delT),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	1
non-synonymous num	0
synonymous substitutions	36730214 (p.Cys31Cys),
non-synonymous substitutions
B6 transcript (ENSMUST00000037623)	MGLKLNGRYISLILAVQIAYLVQAVRAAGKCDAVFKGFSDCLLKLGDSMANYPQGLDDKT NIKTVCTYWEDFHSCTVTALTDCQEGAKDMWDKLRKESKNLNIQGSLFELCGSSNGAAGS LLPALSVLLVSLSAALATWFSF*
MSMv4 transcript	MGLKLNGRYISLILAVQIAYLVQAVRAAGKCDAVFKGFSDCLLKLGDSMANYPQGLDDKT NIKTVCTYWEDFHSCTVTALTDCQEGAKDMWDKLRKESKNLNIQGSLFELCGSSNGAAGS LLPALSVLLVSLSAALATWFSF*
homology	100.00 (143 / 143)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Nrn1 (ENSMUSG00000039114)
Transcript ID	ENSMUST00000037623

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........TGTGACCCTACAGATGACTTCAGGAGGCCCCAGAAAGGAGTTGTACACCA GAGCTTGCCTTGGAAATTTCCTAAAGCGCGAAGAGTTTGTAAACCACAAGAAACCGAAAT TTACCCTAGCCTAGGCTTCTTGCCCGACAGCCTTTCCAACCCCCTAAAATAGGTGTCTCT ATGCCTGGTATAGATGCCCCTCGGTGGGTGAGCGTCGCGAATAGTGACATTCACAAGAGG GCACGCAGAGTCTATTTCTGGGGGCCCCCATGCGAGCCGAACGAACCCCCGGGGCCTGGG TGTGTACGCGCGCTCGCGTGCGGAGTGTGCGGGCGAGCTCGGGGGCGCTCCCGGGCGTGC GCTTTTGTGAGTGTGTGCGTGTGCTGGGGGGCCGGGTTATGTGCTCACGCGCTCTAGGCT GCGCCTAGAGCTCAACTGCGGGGCTGGAGAGAAAACTAGGGTAGGCAAGTGAGGGGGTCT GCACCCCACTGAGGGCGAGAGAAGGGTGATTCGGATCGGAGGAGTCTCTCCCCTCTGTCC TCCCTGGGCCCAAAGCTCCCCAAACCTCTCTGCAGGGTTGGAAGTGTCTGGGTTCGTTGT GGCGCCAGTGAAGGAGGGAGCAGGTTGAACAATCGAGTGGGCGCACCAGGACTCCCCGTC TCCGGGGCGGGGAGAGGAGAGGGAGCCCCGATTCTGCGCAGGGAGGGGGCGGGGCTGGGG GCCCCTGGAACGAGGAGGCGGGGGTGGCCACCGGGATGAAAATCAGTCACTACAGAGAGG CGAGATTTCGTTGAGATCGCACATTAATTGGAGATATCTGATTAATTCCAGAGTCTTATG ACTATAAATGGTGATTCTCTACCAAGGTGTCTATATTATAAAAAAAAAAAAAAATCAATC CGTGTCATCCCCCACGTCAGGCCTGCTCGTGGGCGTGAGGCTGTACTTCCTCCGCCCCCT CCTAATGGAGTGAACCATTCCCAGCTCTCCCCCCCCCCCCCCAGCCACTC
1	EXON 1	36,734,236	36,734,477	-	1	242	ACTCTCTCGCTCTCTTTCTGTCTCTTCCTCGCTCCCTCTCTTTCTCTCCTCCCTCTGCCT TCCCAGTGCATAAAGTCTCTGTCGCTCCCGGAACTTGTTGGCAATGCCTATTTTTCAGCT TTCCCCCGCGTTCTCTAAACTAACTATTTAAAGGTCTGCGGTCGCAAATGGTTTGACTAA ACGTAGGATGGGACTTAAGTTGAACGGCAGATATATTTCACTGATCCTCGCGGTGCAAAT AG
	INTRON 1 - 2	36,730,252	36,734,235			3,984	GTAAGTGACCGCCCGGTACGGCTTG..........TTACTGGTGTCCCTCCTCCCCACAG
2	EXON 2	36,730,107	36,730,251	1	2	145	CTTACCTGGTGCAGGCCGTGAGAGCAGCGGGCAAGTGCGATGCAGTCTTTAAGGGCTTTT CAGACTGTTTGCTCAAGCTGGGCGACAGCATGGCCAACTACCCGCAGGGCCTGGACGACA AGACGAACATCAAGACCGTGTGCAC
	INTRON 2 - 3	36,726,857	36,730,106			3,250	GTAAGTGTCCTCTCTGACCCTGGGT..........TCTGTTTTGTTCTGTTCCTCCCCAG
3	EXON 3	36,725,625	36,726,856	2	-	1,232	ATACTGGGAGGATTTCCACAGCTGCACGGTCACAGCTCTTACGGATTGCCAGGAAGGGGC GAAAGATATGTGGGATAAACTGAGAAAAGAATCGAAAAACCTCAACATCCAAGGCAGCTT ATTCGAACTCTGCGGCAGCAGCAACGGGGCGGCGGGGTCCCTGCTCCCGGCGCTTTCCGT GCTCCTGGTGTCTCTCTCGGCAGCTTTAGCGACCTGGTTTTCCTTCTGAGCGCGGGACCG GGTCCCCCCCTCCCCCTCCGCTCACTCACCCACACTCACACCATGCTCCCGGAAATCGAG AGGAAGAGCCATTCGTTCTCTGAGGACGTTGTGATTCTCTGTGATGTTGAAAACACTCAT ATGGGATTGTGGGAAATCCTGTTTCTCTCTTTTTCTTCTTCTTTTTTTTTTCTTCTTTTT AATTGTGTTTGATTCCTTGTGTTTTATTTGCCAAATGTTACCGATCAGTGAGCGAGCGAG CACAGCCAAAATCGGACCTCACCTTTTAGTCCGTCTTCACAGAAAAATAAGAAAACGGCA AACTCACCCCCATTTTTAAATTTTTATTTTATTTTATTTTATTTTGGCAAAAGAATCTCA GGAATGGCCCTGGGCCACCTACTATATTAATCATGTTGATAACATGAAGAATGATGGGCT CCTCCTAATGGGAAAGCGAGAGGGAAAAGGAGAAGGCCAGGGGAATGACTTCAAGAGTGG TGTCCACGTGGGAATCAGCCGGTGAATAATCATGCTCACGTCTTTCTTCCACAGTACCTT GTTTTGATCATTTCCACTGCACATTTCTCCTCCAGAAAAGCGAAAACACAAGAGTGTGGG CTTAGCATTTTTTTAAGGATAAGACAGAGAGAGAGAAAGAGGTTGGGTATAGTGGGATAG GTTGTCATGAGAGATGCTGCTATGGTCATGAGGGGCCGGTTTCACCTGCTATTGTCGATG CCCCTCGTTCAGGTCCACTGCCTTTATTTTCCTTCCTCTCTTGTTTTAGCTGTTACACAT ACAGTAATACCTGAATATCCAACGGTATAGATCACAAGGGGGTAATCAATGTTAAATCTA AAATAGAATTTAAAAAAAAAGATTTTGACATAAAAGAGCCTTGATTTTAAAAAAAGAGAG AGATGTAATTTAAAAAGTTTATTATAAATTAAATTCAGCAAAAATTTGCTACAAAGTATA GAGAAGTATAAAATAAAAGTTATTGTTTGAAA
	3' upstream sequence						TGGGGTGTCCTTTTGTTTCCTCCGCCGAGGTTCCAGAATTCTTGGGGGAACACACGGTGA CAGGTGATAAATTCACCTGCTCACCAAACTGTCTGGATGACTCCGCTGACTTCATGGGAA CCTTAATTAGGGACACTTGGCCATGTCTCCTACATTCTGCTTATACTGGGGAGGTGGGGG AGGTCGTTTTCAAATTAAGAGCAAGGCCTTTACTACATGCACTGGAGGACCGGTCTTGCA CACACAGATACATCGCCGGTGGTCAGCCGGCTGCCCGGGCACCAGGTGGGCCTGAGCCCT AACCATGGTTCCTTGGGCTGGGCCCTAACAACCACACGCAGCTTCCTCTGTGGTGACTAG AGGTAGCCTGCAAAGGAACCGCCATTAAGGGCTCCTCAGAGGGGCAGAGGCGAGGATCGG GCGAATCCTTTCATAATTAATAAGACAGCACAACTGAAATGGCGAGAAGACGGGGCCTAT TGATCTGCCATTCGATCTGCCCCCTTCTTTCCTATTTATAGGCTCCTCATGGCCTCACAA ATAAGTAAATAGCCGCAGTCCAGACCCAGGTCCTGGGTCTGCAGTCATAGTGTAGGCTGT GGGGGACGGAGAACTACACATAAGCTCTCGGATTCATTGAAATCAAAATCTGATTTCGCT GAAGGTAGGGTTGGGAGGGAGTTTGTGGGTGTTCCCCAGGGTACACGGAGGGGTGGAAGA AGGATGAAGGCTGATTCTGGCGCTGAAACAGGCTCCCACACCCAGCAGCCCCGTCGCCCG CGGCGGGGAGGGTGTGCCGGGACTCTGAAATGCAATGTGTAAACAATCGCTAGTGTAACC GTTCATAAATCAAACCCAGTGGGTCGCAGCCCAATCTGCATTCCCCCCACGGATTGAATT CCAGCAACACATGCGTCCTTGCGCCCCGAGCTCTGAAAGCTGCATGGATTCTTAATGGCA GCATACATTACGGGCTCTGGTTCACGCACGCGCCGCGCAG..........

Sequence Detail Report

Gene Symbol (Gene ID)	Nrn1 (ENSMUSG00000039114)
Transcript ID	ENSMUST00000037623

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 143 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information