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Target CDS Information

Gene Symbol (Gene ID) Trpm3 (ENSMUSG00000052387)
Cross Reference
CCDS CCDS29705.1
EMBL AC123066, AC124513, AC132389, ...show all
GO GO:0005227, GO:0005261, GO:0006812, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0006810, ...show all
MGI_trans_name Trpm3-201
protein_id AAI41401.1, AAI41413.1
Reactome R-MMU-2672351, R-MMU-3295583, R-MMU-382551, ...show all
RefSeq_mRNA NM_177341.4
RefSeq_peptide NP_796315
UCSC uc008gzo.1
UniParc UPI000044FEA4
Uniprot/SPTREMBL B2RUS0
Definition protein_id:ENSMUSP00000042184
translation:
MPGPWGTVYFLGTAQICSFLSSRWNLEGVMNQTDASRPLNWTIRKLCHAAFLPSVRLLKA
QKSWIERAFYKRECVHIIPSTKDPHRCCCGRLIGQHVGLTPSISVLQNEKNESRLSRNDI
QSEKWSISKHTQLSPTDAFGTIEFQGGGHSNKAMYVRVSFDTKPDLLLHLMTKEWQLELP
KLLISVHGGLQNFELQPKLKQVFGKGLIKAAMTTGAWIFTGGVNTGVIRHVGDALKDHAS
KSRGKICTIGIAPWGIVENQEDLIGRDVVRPYQTMSNPMSKLTVLNSMHSHFILADNGTT
GKYGAEVKLRRQLEKHISLQKINTRIGQGVPVVALIVEGGPNVISIVLEYLRDTPPVPVV
VCDGSGRASDILAFGHKYSEEGGLINESLRDQLLVTIQKTFTYTRTQAQHLFIILMECMK
KKELITVFRMGSEGHQDIDLAILTALLKGANASAPDQLSLALAWNRVDIARSQIFIYGQQ
WPVGSLEQAMLDALVLDRVDFVKLLIENGVSMHRFLTISRLEELYNTRHGPSNTLYHLVR
DVKKREYPGFGWIYFKGNLPPDYRISLIDIGLVIEYLMGGAYRCNYTRKRFRTLYHNLFG
PKRPKALKLLGMEDDIPLRRGRKTTKKREEEVDIDLDDPEINHFPFPFHELMVWAVLMKR
QKMALFFWQHGEEAMAKALVACKLCKAMAHEASENDMVDDISQELNHNSRDFGQLAVELL
DQSYKQDEQLAMKLLTYELKNWSNATCLQLAVAAKHRDFIAHTCSQMLLTDMWMGRLRMR
KNSGLKVILGILLPPSILSLEFKNKDDMPYMTQAQEIHLQEKEPEEPEKPTKEKDEEDME
LTAMLGRSNGESSRKKDEEEVQSRHRLIPVGRKIYEFYNAPIVKFWFYTLAYIGYLMLFN
YIVLVKMERWPSTQEWIVISYIFTLGIEKMREILMSEPGKLLQKVKVWLQEYWNVTDLIA
ILLFSVGMILRLQDQPFRSDGRVIYCVNIIYWYIRLLDIFGVNKYLGPYVMMIGKMMIDM
MYFVIIMLVVLMSFGVARQAILFPNEEPSWKLAKNIFYMPYWMIYGEVFADQIDPPCGQN
ETREDGKTIQLPPCKTGAWIVPAIMACYLLVANILLVNLLIAVFNNTFFEVKSISNQVWK
FQRYQLIMTFHERPVLPPPLIIFSHMTMIFQHVCCRWRKHESDQDERDYGLKLFITDDEL
KKVHDFEEQCIEEYFREKDDRFNSSNDERIRVTSERVENMSMRLEEVNEREHSMKASLQT
VDIRLAQLEDLIGRMATALERLTGLERAESNKIRSRTSSDCTDAAYIVRQSSFNSQEGNT
FKLQESIDPAEHPFYSV

Chromosome 19
Length
Position(start - end)
540,532
22,448,283 - 22,988,816
Orient to Chromosome plus
Link Location : (19:22448283-22988816)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Trpm3 (ENSMUSG00000052387)
Transcript ID ENSMUST00000037901
Reports
substitution
cSNPs10
Insertion396
Deletion491
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num9
non-synonymous num1
synonymous substitutions 22715275 (p.Lys241Lys), 22793388 (p.Thr402Thr), 22901189 (p.Gln661Gln), 22904727 (p.Ile817Ile), 22910058 (p.Gly850Gly), 22918728 (p.Asp974Asp), 22918797 (p.Leu997Leu), 22978434 (p.Ala1122Ala), 22986955 (p.Glu1269Glu),
non-synonymous substitutions 22982670 (p.Arg1221His),
B6 transcript
(ENSMUST00000037901)
MPGPWGTVYFLGTAQICSFLSSRWNLEGVMNQTDASRPLNWTIRKLCHAAFLPSVRLLKA
QKSWIERAFYKRECVHIIPSTKDPHRCCCGRLIGQHVGLTPSISVLQNEKNESRLSRNDI
QSEKWSISKHTQLSPTDAFGTIEFQGGGHSNKAMYVRVSFDTKPDLLLHLMTKEWQLELP
KLLISVHGGLQNFELQPKLKQVFGKGLIKAAMTTGAWIFTGGVNTGVIRHVGDALKDHAS
KSRGKICTIGIAPWGIVENQEDLIGRDVVRPYQTMSNPMSKLTVLNSMHSHFILADNGTT
GKYGAEVKLRRQLEKHISLQKINTRIGQGVPVVALIVEGGPNVISIVLEYLRDTPPVPVV
VCDGSGRASDILAFGHKYSEEGGLINESLRDQLLVTIQKTFTYTRTQAQHLFIILMECMK
KKELITVFRMGSEGHQDIDLAILTALLKGANASAPDQLSLALAWNRVDIARSQIFIYGQQ
WPVGSLEQAMLDALVLDRVDFVKLLIENGVSMHRFLTISRLEELYNTRHGPSNTLYHLVR
DVKKREYPGFGWIYFKGNLPPDYRISLIDIGLVIEYLMGGAYRCNYTRKRFRTLYHNLFG
PKRPKALKLLGMEDDIPLRRGRKTTKKREEEVDIDLDDPEINHFPFPFHELMVWAVLMKR
QKMALFFWQHGEEAMAKALVACKLCKAMAHEASENDMVDDISQELNHNSRDFGQLAVELL
DQSYKQDEQLAMKLLTYELKNWSNATCLQLAVAAKHRDFIAHTCSQMLLTDMWMGRLRMR
KNSGLKVILGILLPPSILSLEFKNKDDMPYMTQAQEIHLQEKEPEEPEKPTKEKDEEDME
LTAMLGRSNGESSRKKDEEEVQSRHRLIPVGRKIYEFYNAPIVKFWFYTLAYIGYLMLFN
YIVLVKMERWPSTQEWIVISYIFTLGIEKMREILMSEPGKLLQKVKVWLQEYWNVTDLIA
ILLFSVGMILRLQDQPFRSDGRVIYCVNIIYWYIRLLDIFGVNKYLGPYVMMIGKMMIDM
MYFVIIMLVVLMSFGVARQAILFPNEEPSWKLAKNIFYMPYWMIYGEVFADQIDPPCGQN
ETREDGKTIQLPPCKTGAWIVPAIMACYLLVANILLVNLLIAVFNNTFFEVKSISNQVWK
FQRYQLIMTFHERPVLPPPLIIFSHMTMIFQHVCCRWRKHESDQDERDYGLKLFITDDEL
KKVHDFEEQCIEEYFREKDDRFNSSNDERIRVTSERVENMSMRLEEVNEREHSMKASLQT
VDIRLAQLEDLIGRMATALERLTGLERAESNKIRSRTSSDCTDAAYIVRQSSFNSQEGNT
FKLQESIDPAEHPFYSV*
MSMv4 transcript
MPGPWGTVYFLGTAQICSFLSSRWNLEGVMNQTDASRPLNWTIRKLCHAAFLPSVRLLKA
QKSWIERAFYKRECVHIIPSTKDPHRCCCGRLIGQHVGLTPSISVLQNEKNESRLSRNDI
QSEKWSISKHTQLSPTDAFGTIEFQGGGHSNKAMYVRVSFDTKPDLLLHLMTKEWQLELP
KLLISVHGGLQNFELQPKLKQVFGKGLIKAAMTTGAWIFTGGVNTGVIRHVGDALKDHAS
KSRGKICTIGIAPWGIVENQEDLIGRDVVRPYQTMSNPMSKLTVLNSMHSHFILADNGTT
GKYGAEVKLRRQLEKHISLQKINTRIGQGVPVVALIVEGGPNVISIVLEYLRDTPPVPVV
VCDGSGRASDILAFGHKYSEEGGLINESLRDQLLVTIQKTFTYTRTQAQHLFIILMECMK
KKELITVFRMGSEGHQDIDLAILTALLKGANASAPDQLSLALAWNRVDIARSQIFIYGQQ
WPVGSLEQAMLDALVLDRVDFVKLLIENGVSMHRFLTISRLEELYNTRHGPSNTLYHLVR
DVKKREYPGFGWIYFKGNLPPDYRISLIDIGLVIEYLMGGAYRCNYTRKRFRTLYHNLFG
PKRPKALKLLGMEDDIPLRRGRKTTKKREEEVDIDLDDPEINHFPFPFHELMVWAVLMKR
QKMALFFWQHGEEAMAKALVACKLCKAMAHEASENDMVDDISQELNHNSRDFGQLAVELL
DQSYKQDEQLAMKLLTYELKNWSNATCLQLAVAAKHRDFIAHTCSQMLLTDMWMGRLRMR
KNSGLKVILGILLPPSILSLEFKNKDDMPYMTQAQEIHLQEKEPEEPEKPTKEKDEEDME
LTAMLGRSNGESSRKKDEEEVQSRHRLIPVGRKIYEFYNAPIVKFWFYTLAYIGYLMLFN
YIVLVKMERWPSTQEWIVISYIFTLGIEKMREILMSEPGKLLQKVKVWLQEYWNVTDLIA
ILLFSVGMILRLQDQPFRSDGRVIYCVNIIYWYIRLLDIFGVNKYLGPYVMMIGKMMIDM
MYFVIIMLVVLMSFGVARQAILFPNEEPSWKLAKNIFYMPYWMIYGEVFADQIDPPCGQN
ETREDGKTIQLPPCKTGAWIVPAIMACYLLVANILLVNLLIAVFNNTFFEVKSISNQVWK
FQRYQLIMTFHERPVLPPPLIIFSHMTMIFQHVCCRWRKHESDQDERDYGLKLFITDDEL
KKVHDFEEQCIEEYFREKDDHFNSSNDERIRVTSERVENMSMRLEEVNEREHSMKASLQT
VDIRLAQLEDLIGRMATALERLTGLERAESNKIRSRTSSDCTDAAYIVRQSSFNSQEGNT
FKLQESIDPAEHPFYSV*
homology99.93 (1338 / 1338)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Trpm3 (ENSMUSG00000052387)
Transcript ID ENSMUST00000037901
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........AAGTTCCCTCATGTTCCCTTTCACCATGGGAGCTTTAAAAACTGTTGGCT
CCAATGGAGCCACACTTTTGTAAAGCCTCCTTCAAAAATTATTGAGAAGAGGGGGACACT
CAAGGAAACCATTTTTTGTGGACAGTACCCTGTAGGGCACTTTAAGGGTTAAAGTTTGTT
GCAGAGAAGGTCTATCTTGTGGGAATATCCCCCAATATAGAAACAACTATTGTTGAAAGG
GTAAGCCACAAACGTCTTCTTTTGCACAGCTTTCTGTGACAGGAGTAACTCCTTGTTCCC
TGTGTGTGTATGTGCGAGTTTGACTAAGCCTCTGACCATCTATCATCTACATGGGGCTTG
CTTGTATCAATCAGGGTGCAGACTGTCAATCATAGTTAATAAAAGACTTCAGAACACAGC
AGGGATCTCCTTTTACTATAGATCCATTCTACGATAGCTCTCAATTTATTATGTCACACA
AATCAAAAAGGAAGCATTTATCTTATCATTCAGAGGCATCCCTTCTCCCTCCCGGTGTCC
TAGCCCCTCCCCCTGCGCCAGTTTCCAGCCCCTCAAAGATGCTTTGTGCAAAAAAGTATA
AGTTCTCCTTCTGGGTTCATTTTTGTTCCTTTTTGCTCTCCTCCTGGCTCCCCCCCAAAA
CAAGAGAGCAAAGCAAATGGCCCGGGTTCCCCCCCAACGCCTGACCTGTGTTTGCAGGAG
GAGAGCAGGAGAGGGAGCGCGCATTCTGGAGCAGGCTCCTCTGACTCCGACCACAGGCTG
TTTTGTGCAGGCTGTCCCTCTCCTTCGAAATCAAGCATCCCCCTCCCCGAAGCAGCAGGC
AGCGTGCCTCCATTCGGCCACATTTGGTATGCATGAGCACGGCTGCAGGAAGAGGGGAGG
TGGCTTTCTTAAGAAGGTTCAGGGGCTCAGGAAACGCCACTTGACTAGACTCCCAAGTTC
CAGGAAGCCTCTGCCCTAATGGAATTTGCAGGTGTGGAGATGACCATGGG
1 EXON 1 22,448,283 22,448,459 - 0 177
ATGCCAGGGCCGTGGGGGACCGTTTATTTTCTAGGCACTGCCCAGATTTGCAGTTTCTTG
TCTTCCCGGTGGAATTTGGAAGGGGTCATGAATCAGACTGATGCTTCTCGACCCCTAAAT
TGGACCATCCGGAAGCTATGCCACGCAGCCTTTCTCCCATCTGTCAGACTTCTCAAG
INTRON 1 - 2 22,448,460 22,697,421 248,962
GTACTGTAACTTGCTGCTTTGAATG..........TTCTCTCTCTCTCATTTTGTTTCAG
2 EXON 2 22,697,422 22,697,501 0 2 80
GCTCAGAAATCCTGGATTGAAAGAGCATTTTATAAAAGAGAATGTGTTCACATCATACCG
AGCACCAAAGACCCCCATAG
INTRON 2 - 3 22,697,502 22,698,728 1,227
GTAACCCTATTGTCTCTAATGTATT..........CTCACTTTAACCTCTCCTGTTATAG
3 EXON 3 22,698,729 22,698,933 2 0 205
GTGTTGCTGTGGACGCCTCATAGGCCAGCATGTTGGACTCACTCCCAGTATCTCTGTGCT
TCAGAATGAGAAAAATGAGAGTCGCCTCTCCCGAAATGACATCCAGTCTGAGAAGTGGTC
TATCAGCAAACACACTCAGCTCAGCCCAACAGACGCTTTTGGGACCATTGAGTTCCAAGG
AGGTGGCCATTCCAACAAAGCTATG
INTRON 3 - 4 22,698,934 22,711,711 12,778
GTAATTTGAAAGACAGTTACTCATT..........CCCTAATTGTCAATCTCTATTCTAG
4 EXON 4 22,711,712 22,711,925 0 1 214
TATGTCCGAGTATCTTTTGATACGAAACCTGATCTCTTGCTACACCTGATGACCAAGGAA
TGGCAACTGGAGCTTCCCAAACTTCTCATCTCCGTGCACGGAGGGCTGCAGAACTTTGAA
CTCCAGCCCAAACTCAAGCAAGTCTTCGGGAAGGGGCTCATCAAAGCAGCCATGACAACT
GGAGCCTGGATCTTCACTGGAGGGGTCAACACAG
INTRON 4 - 5 22,711,926 22,715,228 3,303
GTAATCAGAGTAGGATGGAGAAAGG..........CCCCCTTCTCTTTTTCGGCTCTTAG
5 EXON 5 22,715,229 22,715,353 1 0 125
GTGTCATTCGTCATGTTGGAGATGCCTTGAAAGACCATGCATCTAAATCTCGAGGGAAGA
TATGTACCATAGGTATCGCCCCCTGGGGAATTGTGGAAAACCAGGAAGACCTGATTGGAA
GAGAT
INTRON 5 - 6 22,715,354 22,732,999 17,646
GTGAGTCCTGGGGAGTGCTCGATTG..........TCTGCCTTCCTTTTGCTGCCTGTAG
6 EXON 6 22,733,000 22,733,171 0 1 172
GTAGTCCGACCATACCAGACCATGTCCAATCCTATGAGCAAGCTCACCGTTCTCAATAGC
ATGCACTCCCACTTCATCCTGGCTGACAATGGGACCACGGGGAAATACGGAGCAGAGGTG
AAACTCCGCAGACAACTGGAAAAGCACATTTCACTCCAGAAGATAAACACAA
INTRON 6 - 7 22,733,172 22,766,633 33,462
GTAAGTTGAGCCACACTGTGACTAC..........TTTTCTTTTCCTTTTTTTAATGCAG
7 EXON 7 22,766,634 22,766,808 1 2 175
GAATCGGTCAAGGGGTTCCAGTGGTGGCTCTCATCGTGGAAGGAGGACCCAATGTGATCT
CAATTGTTTTGGAATACCTTCGAGACACCCCTCCTGTACCAGTCGTGGTCTGTGATGGGA
GTGGACGGGCATCCGACATCCTGGCATTTGGGCATAAATATTCAGAAGAAGGCGG
INTRON 7 - 8 22,766,809 22,793,330 26,522
GTGAGTAAATTGCCGGGTCCCGTGG..........TCACTGACCTTGGTTTTCATTGCAG
8 EXON 8 22,793,331 22,793,454 2 0 124
ACTTATCAATGAATCTTTGAGGGACCAGCTGTTGGTGACAATACAGAAGACCTTCACATA
CACTCGAACCCAAGCTCAGCACCTGTTCATCATCCTCATGGAATGCATGAAGAAGAAGGA
ACTG
INTRON 8 - 9 22,793,455 22,856,677 63,223
GTATGTCAACCCCCATGAAAATGGG..........AATTGTCTCCTTTCTCAAATTGCAG
9 EXON 9 22,856,678 22,856,750 0 1 73
ATCACAGTGTTTCGAATGGGGTCAGAAGGCCACCAGGACATTGATTTAGCTATCCTGACA
GCATTACTCAAAG
INTRON 9 - 10 22,856,751 22,883,883 27,133
GTAAGAATCTCTCTGTCTACATAAT..........TGTTTTTCCGTCCCACTTTATACAG
10 EXON 10 22,883,884 22,883,984 1 0 101
GTGCCAATGCATCCGCCCCAGACCAACTGAGCTTAGCTTTAGCCTGGAACAGAGTTGACA
TCGCTCGCAGCCAGATCTTTATTTACGGGCAGCAGTGGCCG
INTRON 10 - 11 22,883,985 22,885,347 1,363
GTAGAGTATACGTCGTAGTCGTTAC..........GCTAAGTGAATATCTTGAATTGCAG
11 EXON 11 22,885,348 22,885,482 0 0 135
GTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTGGACAGAGTGGATTTTGTG
AAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACCATCTCCAGACTAGAG
GAACTGTACAATACG
INTRON 11 - 12 22,885,483 22,889,393 3,911
GTAGGGCCAAGCTAAGATGCCTTTT..........TTTGATTGTTCTTTATCGTTTTCAG
12 EXON 12 22,889,394 22,889,444 0 0 51
AGACATGGGCCCTCAAATACATTGTACCACTTGGTCAGGGATGTCAAAAAG
INTRON 12 - 13 22,889,445 22,897,483 8,039
GTAAGAATCCTCTAGACCACAGGTC..........ATTTAACTTATGTCTTCTTTCCAAG
13 EXON 13 22,897,484 22,897,519 0 0 36
CGAGAGTATCCAGGTTTCGGTTGGATCTATTTTAAG
INTRON 13 - 14 22,897,520 22,897,669 150
GTGAATTAATTAACCAGCATAATAA..........CTGTTGCTCCCTTCCTCCCTCACAG
14 EXON 14 22,897,670 22,897,810 0 0 141
GGAAACCTGCCCCCGGACTACAGAATCAGCCTGATAGACATTGGCCTGGTGATCGAGTAC
CTGATGGGCGGGGCTTACCGCTGCAACTACACGCGCAAGCGCTTTCGGACCCTCTACCAC
AATCTCTTTGGCCCCAAAAGG
INTRON 14 - 15 22,897,811 22,900,133 2,323
GTGAGCTTCTCGCTTGTTCTTAGGC..........TTGTTCACAACATTTTTTTAAACAG
15 EXON 15 22,900,134 22,900,163 0 0 30
CCCAAAGCCTTGAAACTGCTGGGAATGGAG
INTRON 15 - 16 22,900,164 22,901,045 882
GTTAGTGTTTGCTCAAATTATTAGC..........TGTATGTGTCTCTCTACGACTGCAG
16 EXON 16 22,901,046 22,901,335 0 2 290
GATGATATTCCCTTGAGGAGAGGACGGAAGACAACTAAGAAGCGTGAGGAAGAGGTGGAC
ATCGACTTGGATGATCCTGAGATCAACCACTTTCCATTCCCCTTCCATGAGCTGATGGTG
TGGGCCGTCCTCATGAAGAGACAGAAGATGGCCCTGTTCTTCTGGCAACACGGAGAGGAG
GCCATGGCCAAAGCCCTGGTGGCCTGCAAGCTCTGCAAGGCCATGGCTCACGAGGCTTCT
GAGAATGACATGGTCGATGACATTTCCCAGGAGCTGAACCACAACTCCAG
INTRON 16 - 17 22,901,336 22,901,987 652
GTTGGCCAGCCAGCACATGAGGAGG..........GTGCCTCTTGAACATTGTCTTGCAG
17 EXON 17 22,901,988 22,902,216 2 0 229
GGACTTTGGCCAGCTGGCTGTGGAGCTCCTGGACCAGTCCTACAAACAGGATGAGCAGCT
GGCCATGAAGCTGCTGACGTATGAGCTGAAGAACTGGAGTAATGCCACATGCCTGCAGCT
GGCTGTGGCTGCCAAGCACCGTGACTTCATTGCACACACGTGCAGCCAGATGTTACTTAC
TGACATGTGGATGGGACGGCTCCGGATGAGAAAGAACTCAGGCCTCAAG
INTRON 17 - 18 22,902,217 22,904,634 2,418
GTCAGCATACCCAAAAAGGATCCGT..........ATTATTATCATTATTATTACTTTAG
18 EXON 18 22,904,635 22,904,802 0 0 168
GTAATTCTGGGAATTCTACTTCCTCCTTCAATTCTCAGCTTGGAGTTCAAGAACAAAGAT
GACATGCCCTATATGACTCAGGCCCAGGAGATCCATCTCCAAGAGAAGGAGCCGGAGGAG
CCAGAGAAGCCCACAAAGGAAAAAGATGAAGAGGACATGGAGCTAACA
INTRON 18 - 19 22,904,803 22,910,034 5,232
GTAAGGAAACATTTATGCAGTTTTC..........TGGTCTCTGTTCTCTCCCACTATAG
19 EXON 19 22,910,035 22,910,175 0 0 141
GCAATGTTGGGGCGAAGCAATGGAGAATCATCCAGAAAGAAAGATGAAGAAGAAGTTCAA
AGCAGGCACCGGCTAATCCCCGTGGGCCGAAAAATCTATGAGTTCTACAACGCACCCATC
GTGAAGTTCTGGTTCTACACT
INTRON 19 - 20 22,910,176 22,914,430 4,255
GTAAGCACTTTTCCTTCTCCCTTTC..........CTTACTGTATTGTATTTCCTTACAG
20 EXON 20 22,914,431 22,914,559 0 0 129
CTGGCGTATATTGGATACCTGATGCTCTTCAACTACATCGTGTTAGTGAAGATGGAGCGC
TGGCCTTCCACTCAGGAATGGATTGTCATCTCCTACATTTTCACTCTGGGAATAGAGAAG
ATGAGAGAG
INTRON 20 - 21 22,914,560 22,918,602 4,043
GTAACAAAATGAAATAATAAATAAA..........CTAAGCCCTCTTTGCTGCCTCATAG
21 EXON 21 22,918,603 22,918,854 0 0 252
ATCCTGATGTCGGAGCCGGGCAAGCTGCTGCAGAAGGTGAAGGTGTGGCTTCAGGAGTAC
TGGAACGTCACAGACCTCATCGCCATCCTTCTCTTCTCGGTGGGAATGATCCTTCGTCTT
CAAGACCAGCCCTTCAGGAGTGACGGGAGGGTCATCTACTGTGTGAACATCATTTATTGG
TATATCCGTTTGCTAGACATCTTCGGCGTGAACAAGTATCTGGGCCCATATGTGATGATG
ATTGGGAAAATG
INTRON 21 - 22 22,918,855 22,925,895 7,041
GTAAGCAAGGTCAACTGGTTCCGTG..........TGTTTCTCCTTTCCTGCCCTTCCAG
22 EXON 22 22,925,896 22,926,070 0 1 175
ATGATAGACATGATGTACTTTGTCATCATTATGCTGGTGGTGCTGATGAGCTTTGGGGTC
GCCAGGCAAGCCATTCTCTTTCCCAATGAGGAGCCATCTTGGAAACTGGCCAAGAATATC
TTCTACATGCCTTATTGGATGATTTATGGGGAAGTGTTTGCTGACCAGATAGACC
INTRON 22 - 23 22,926,071 22,978,291 52,221
GTAAGCAAGTTTATGATTCTCATAC..........TTTTTACCTGTGTCACTTCCTCTAG
23 EXON 23 22,978,292 22,978,442 1 2 151
CTCCCTGTGGACAGAATGAGACCCGAGAGGATGGCAAGACAATCCAGCTGCCCCCATGCA
AGACAGGAGCATGGATTGTCCCGGCCATCATGGCCTGCTACCTCTTGGTGGCGAACATCC
TTCTGGTCAACCTCCTTATTGCTGTCTTCAA
INTRON 23 - 24 22,978,443 22,978,555 113
GTGAGTGGCCACTCCTTAAGGCGTA..........CATGTGACTCTCCGGTCTGTTTCAG
24 EXON 24 22,978,556 22,978,755 2 1 200
CAATACATTTTTTGAGGTCAAGTCGATATCCAACCAAGTATGGAAATTTCAGAGGTACCA
GCTCATCATGACTTTCCACGAGAGGCCGGTTCTGCCCCCACCGCTCATCATCTTCAGTCA
CATGACCATGATCTTCCAGCATGTGTGCTGCCGGTGGAGGAAGCATGAGAGTGACCAGGA
CGAAAGGGACTACGGCCTGA
INTRON 24 - 25 22,978,756 22,982,582 3,827
GTGAGCTGCAAGCCGGCGCCTGCAG..........CCCCACTCCCCCTCCACTCCCACAG
25 EXON 25 22,982,583 22,982,715 1 2 133
AACTCTTCATAACTGACGATGAGCTCAAGAAAGTACACGATTTTGAAGAGCAGTGCATAG
AGGAATATTTCCGAGAGAAGGATGATCACTTCAATTCGTCCAACGATGAGAGGATACGTG
TTACATCAGAAAG
INTRON 25 - 26 22,982,716 22,986,855 4,140
GTGTGTTCCTCCACACAGGTGCTTC..........CTCTTACTCTTTGCTTCTCATACAG
26 EXON 26 22,986,856 22,987,139 2 1 284
GGTGGAGAACATGTCCATGAGGCTGGAGGAAGTTAATGAGAGAGAACATTCCATGAAGGC
TTCACTCCAGACCGTGGACATCCGGCTAGCACAGCTAGAAGACCTCATCGGGCGCATGGC
CACCGCCCTGGAGCGCCTGACTGGTCTGGAGCGGGCAGAGTCTAACAAAATCCGCTCAAG
GACCTCCTCAGACTGCACAGATGCAGCCTACATCGTCCGCCAGAGCAGCTTCAACAGCCA
GGAAGGGAACACCTTCAAACTTCAAGAGAGTATAGACCCTGCAG
INTRON 26 - 27 22,987,140 22,988,793 1,654
GTGAGGAGACCATATCCCCAACTTC..........GTTCCATCACTGGTGACTGATGAAG
27 EXON 27 22,988,794 22,989,884 1 - 1,091
AACATCCTTTTTATTCAGTATAAGCCGGCAGCAAGCAGTTCTACCTAACGTCCCACATCC
TTCTCATGCCAACACCTCTGTAATTGGTCATTATAAAGAAAACCAAGGTAACAGTCATAT
ATACAGTTCACCTGTCTCTTATCTATTCACCTCTGGTGCCACAACTGTTTATCTCTTTAG
AAGAAAATAAGGGAACAGAAAAAAAATGCCTTTTTTTTTGTCTTGCGATCAAAATGAAAG
AAGAATTGATGTTGAAAGCAAAAGTCATATGATTTATAATATACCACGGGCAATCAAATA
TAGTCAAGGAAGCTCAGGATGAATGTACTCAGATACTTTTATATTTGTAAGTTATTTTGT
ATCTCACCTGTCATCAAAGAATTCACTCGTCAAATGTGTAATATTGAACTTTAAGGAAAA
GGTGGGAAGATCTAACATTAAGTTGCCAGTGGGATGTTGTCACAGTCTCACCGTTCATAG
TGTGTGACGCTGCTGTGTGGGCCTTCATCATCTGCATGTCTCCACTATGTCCTCCAGACA
CCTCCAAGATGTAACTGCCAAATTTCCATACCGCTCATCACGTGACCATTTTGTATTTGA
ACACATGGTTATATGTGGATATTTTCATACCTAGAGTTTTAGCCATCTAATCTGGGCTCA
GCATAAATTTAATCAGAGTTTTTCAAGGGCTGGTATCTTTTTTATGGAAATGTTCCAAAG
TACTTTTTAAGGAAGTTTAAAAACCATAAATAACCTTAGATTTGAGTAGGGGCTTGATAG
CAACCCAAACCCATCAGTTGCAGGTAGGCCATGAATATGTTTCTTATTTACAAAGCTATA
AAAAAGATACAGTAGGGCTAAAATAGAAAGCAATTTTACCATATACAGAATTCTATAGTT
TATGCTGCTTACATATACATCCACATACAGACTCATGTTTATATACAGTATGTATACAGA
CAGAGATTTCTTAAAAGGCTTTGACTTTCTGTCATCTGACGGTATAACTAAGATTATTTT
TTAGTGTCCAAGAAGTTTCTCTGGAAAAAGTTTATTGTGCTATTGGACCCACTGTTGAAA
TTATAATTTTC
3' upstream sequence
AAAAGAAAAAATATCTCTGGTCTTCTTCACCTGTCTTTTCACTGAACAAGAACTGTCCAA
ATGGTCTCCTCCCTCCCCCTCCCCCCCTCCCTCCCCCTCCCCCCCCCCCCCCAATCTCCT
TCTATTTGGAAGCATCCATTGTCATGAAATCCCTTTTACTCTGGTTGTTCTGACACAAAG
CTATTACCACCAAATACACTCTGAATAGATGAGTGCTTCTAAGCCAGTTTGTATTACACC
ATCTAGGATGGAGGCATATGTTTCTAGAATAGAACCTGGACTTGAAGTGGGATAAAGAAA
TCTTGACCACAAATCTTTGGATTCCTATTTAGATCACTGAACACAGAGTCTTTAAGAAAA
AAAATGATTTGGGGCCAGGAATAGTGGTAATGTTCACTGTGTGTGATTCTGGGCACTTGG
GAAGAAGAGGAAGAAGATGAGGAATTGAGAGTCAATCTCTGCTATGTAGCAAGTTCAAGG
CCAACCTGGACTATATGAGACCCTGTTGCAGAGAGAAGGGGAGAGAGAGAGAAAAAAGAC
AGAGAGAGAAAGAGAGACAGAGACAGAGAGAGACAGAGAGGGAGGGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAACATAATTTAATGTTCCTGGTCCCAGGTGTTCCTT
ATTTTGTTTTTTTCATTGCAGTTCTAAACAGCAAGGTGGATATCCCTTAGTGAAATCAAG
TCAGTACCCCACAAAACCTGTAGCCTTTAAATGTTTTTTTTTTTTTAAGAAAAAAATCTT
TTCAGCAGAAGAGTGGCAAGCATGTATCCATAAGGAATCCTTTTTCATCCTTGGTATTTA
GGCAACACCCAAGCTCTTCACTGATAACTGCGCTAGAGACACTTACTTCCTAACTGGTGA
TCTCCCTCCCAGCAGACATGCTCTGAACCTGGAAATAAATCATTTGTCTCTAAGCTTCCT
AGAGCCATGAGTCCCTGTAAGAACCCGATAGAAACGCTGA..........

Sequence Detail Report

Gene Symbol (Gene ID) Trpm3 (ENSMUSG00000052387)
Transcript ID ENSMUST00000037901
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 1338 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information