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Target CDS Information

Gene Symbol (Gene ID) Efhc1 (ENSMUSG00000041809)
Cross Reference
CCDS CCDS48227.1
EMBL AC156980, EU520262
GO GO:0005509, GO:0005515, GO:0005813, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name Efhc1-001
OTTP OTTMUSP00000038413
OTTT OTTMUST00000074047
protein_id ACB20692.1
RefSeq_mRNA NM_027974.1
RefSeq_peptide NP_082250
UCSC uc007alf.2
UniParc UPI0000024705
Uniprot/SPTREMBL B2CKC6
Vega_transcript Efhc1-001, OTTMUST00000074047
Vega_translation 178815, OTTMUSP00000038413
Definition protein_id:ENSMUSP00000042343
translation:
MGTNPVHGLPFLPGSSFTDSTKTAFHRSQTLNYRNGYAVVRRPTMGIGGDRLHYNQLSQA
ELDELANKAPILTYGPLKQAPLAEFVPAHVAFDKKVLKFSAYFQEDVPISMEEHYRIRHV
NIYYYLEDDSMSVIEPVVENSGIPQGKLIKRQRFTKNDMGDHYHWKDLNRGINLTVYGKT
FRIVDCDRFTQDFLESQGIELNPSEKIPLDPYTQLRKEPVRKYVTPSDFDQLKQFLTFDK
QVLRFYAIWDDTDSLFGECRHYIIHYYLMDDTVEIREVHERNNGRDPFPLLMNRQRMPKV
LVENAKNFPKCVLEISDQEVLEWYTAKDFIVGKPLTILGRTFFIYDCDPFTRQFYKDKFG
MPDLPPVDVTKKEPPPVKQELPPYNGYGLIEDSAQNCFALIPKAPRKDVVKMLMNDNKVL
RYLAALESPIPEDKDRRFVFSYFLATDMISIFEPPVRNSGIIGGKFLGRTKVVKSFSPVD
NPIYYSPSDFFIGAVIEVFGHRFVILDTDEYVLKYMESNASQYSPEALASIQNRIQKPEL
PAPELESKQATGEPMVQGTEESKVQDLDALIDQIHMHLKYNSCKENLRETFQMYDKDESG
YVDRETFFKICETLNVPVDDSLIKELIRLCTHGEGRINYYNFVRAFSN

Chromosome 1
Length
Position(start - end)
38,953
20,951,734 - 20,990,688
Orient to Chromosome plus
Link Location : (1:20951734-20990688)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Efhc1 (ENSMUSG00000041809)
Transcript ID ENSMUST00000038447
Reports
substitution
cSNPs9
Insertion32
Deletion50
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num7
non-synonymous num2
synonymous substitutions 20972785 (p.Pro309Pro), 20974922 (p.Tyr387Tyr), 20978822 (p.Ser486Ser), 20979474 (p.Asn519Asn), 20979537 (p.Leu540Leu), 20989518 (p.Asp597Asp), 20990671 (p.Arg644Arg),
non-synonymous substitutions 20960407 (p.Arg188Gln), 20989432 (p.Ala569Thr),
B6 transcript
(ENSMUST00000038447)
MGTNPVHGLPFLPGSSFTDSTKTAFHRSQTLNYRNGYAVVRRPTMGIGGDRLHYNQLSQA
ELDELANKAPILTYGPLKQAPLAEFVPAHVAFDKKVLKFSAYFQEDVPISMEEHYRIRHV
NIYYYLEDDSMSVIEPVVENSGIPQGKLIKRQRFTKNDMGDHYHWKDLNRGINLTVYGKT
FRIVDCDRFTQDFLESQGIELNPSEKIPLDPYTQLRKEPVRKYVTPSDFDQLKQFLTFDK
QVLRFYAIWDDTDSLFGECRHYIIHYYLMDDTVEIREVHERNNGRDPFPLLMNRQRMPKV
LVENAKNFPKCVLEISDQEVLEWYTAKDFIVGKPLTILGRTFFIYDCDPFTRQFYKDKFG
MPDLPPVDVTKKEPPPVKQELPPYNGYGLIEDSAQNCFALIPKAPRKDVVKMLMNDNKVL
RYLAALESPIPEDKDRRFVFSYFLATDMISIFEPPVRNSGIIGGKFLGRTKVVKSFSPVD
NPIYYSPSDFFIGAVIEVFGHRFVILDTDEYVLKYMESNASQYSPEALASIQNRIQKPEL
PAPELESKQATGEPMVQGTEESKVQDLDALIDQIHMHLKYNSCKENLRETFQMYDKDESG
YVDRETFFKICETLNVPVDDSLIKELIRLCTHGEGRINYYNFVRAFSN*
MSMv4 transcript
MGTNPVHGLPFLPGSSFTDSTKTAFHRSQTLNYRNGYAVVRRPTMGIGGDRLHYNQLSQA
ELDELANKAPILTYGPLKQAPLAEFVPAHVAFDKKVLKFSAYFQEDVPISMEEHYRIRHV
NIYYYLEDDSMSVIEPVVENSGIPQGKLIKRQRFTKNDMGDHYHWKDLNRGINLTVYGKT
FRIVDCDQFTQDFLESQGIELNPSEKIPLDPYTQLRKEPVRKYVTPSDFDQLKQFLTFDK
QVLRFYAIWDDTDSLFGECRHYIIHYYLMDDTVEIREVHERNNGRDPFPLLMNRQRMPKV
LVENAKNFPKCVLEISDQEVLEWYTAKDFIVGKPLTILGRTFFIYDCDPFTRQFYKDKFG
MPDLPPVDVTKKEPPPVKQELPPYNGYGLIEDSAQNCFALIPKAPRKDVVKMLMNDNKVL
RYLAALESPIPEDKDRRFVFSYFLATDMISIFEPPVRNSGIIGGKFLGRTKVVKSFSPVD
NPIYYSPSDFFIGAVIEVFGHRFVILDTDEYVLKYMESNASQYSPEALASIQNRIQKPEL
PAPELESKQATGEPMVQGTEESKVQDLDTLIDQIHMHLKYNSCKENLRETFQMYDKDESG
YVDRETFFKICETLNVPVDDSLIKELIRLCTHGEGRINYYNFVRAFSN*
homology99.69 (649 / 649)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Efhc1 (ENSMUSG00000041809)
Transcript ID ENSMUST00000038447
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........AAATCCCTGGGCATCTTAGCTTCCCTTTTATTTCCCCATGCTGACAGACT
CTTGGTTTCTTTCTTTTCCTGATGATCTTTCAGGAATGGGGTCACTTTTTTTTTAAAGGA
AAAAAAAAAAGTTGTCCAGAAAATGCTATACTCGGCAGTACACATGACCCTGACAATATT
TCACTCCCCTGAATTACTTCTTTCTCATGACTCGGTCTCTCTTTGAAGGTTCTCTCTTCC
TCTGTGGTTCTTATGTATCACTGATGCTATAGCTATAAAGCAAGGACTAAGGTAGGCATA
GGCACTCTCCAGCTTTTCAGTCAACAGATACCCAGTAAAGTTCTGAGACCTCAGCACACA
ATCTATAGGAATCTACGGTGGAACAGATAGCTAAGAGGGGACCAGGAAGCCGTGGAAAGA
CTGGGGCTTCAAATCGGATCAAGTCTGAGCAACGAAAATGCAGTCGATTATAATCTAATC
CACAGCCCTTGCCTCCTCAAATTATGAGCCTGAAGTATTAAGCGCTTTCACTGGGGAGCA
ACCACTGTACATTGTGTCTGGACTAGGACAGCAGCTCTTTCCCCAGAGAAAGGGTGCCTG
AGCTCTTGGGAGGACTAACGTGGAGCAAGGAACTTCTTTGTAACAACTGATCTAAAGGGA
CGTGGTCCAATCCCAGACCTCACTGCGCGAGCCAAGGCCTAAGAACATCCGCTTTCTTCA
GCCCACCCCTAGGTTGCATCCTCTGGGAGCCAGGAAGTGGGGGCTGAGGAGAAAGGGAAA
AGTATGGGAAAGAAAGGGGGCGGAGCCGCCTCTGCCACACCCATTAGCCACGTCCTGTGG
CCACTAGAGTCAGTAGTGCTGTGCGCAGGCGCAGACCTGGCCTCCGCCTCCCTTTCCCCG
CCCCCTAACATCCTCCCCTCCTCCCCGCCGCTCCTCCCCTCCCTCGACTAGTGTGTTTGG
CGTTGCCAGGGAGTCTGGAGAGGCCCGCGAGTGCAGTTTGTTGCCAGGGT
1 EXON 1 20,951,688 20,951,796 - 0 109
AACCCGAGCGGCAAAAGGCAACCGAGGTGGCAGCTGCAGGGCAGCGATGGGGACCAACCC
GGTGCACGGCCTGCCCTTTCTCCCGGGCTCGTCCTTTACAGACTCCACG
INTRON 1 - 2 20,951,797 20,955,334 3,538
GTGAGGGCCAGCCTGAAGGGTTCTC..........TTAACGGTATACACCTTTTCTTCAG
2 EXON 2 20,955,335 20,955,556 0 0 222
AAAACAGCATTCCACCGAAGCCAGACACTCAACTACAGGAACGGCTATGCAGTTGTCCGA
CGTCCCACCATGGGGATAGGTGGAGACCGGCTCCACTACAACCAGCTGTCTCAGGCCGAG
CTGGATGAACTGGCCAATAAGGCACCCATCTTAACTTACGGGCCACTCAAGCAAGCCCCA
CTTGCAGAGTTTGTTCCTGCGCATGTGGCTTTTGACAAAAAG
INTRON 2 - 3 20,955,557 20,960,129 4,573
GTATCATCTGGGATTTTAAGGGCAC..........AGAAATCTTCTCTTGGGTTTTACAG
3 EXON 3 20,960,130 20,960,417 0 0 288
GTGCTGAAATTTAGTGCCTACTTCCAAGAAGATGTTCCCATATCAATGGAGGAGCATTAC
CGAATCCGCCACGTGAACATTTACTACTACCTAGAAGATGACAGCATGTCTGTCATCGAG
CCCGTAGTGGAGAACTCTGGGATCCCACAAGGCAAGCTAATCAAACGCCAGCGGTTCACC
AAGAATGATATGGGAGACCACTACCACTGGAAGGACCTCAACCGTGGAATCAACCTTACA
GTGTACGGCAAAACCTTCCGAATTGTTGACTGTGACCAATTCACTCAG
INTRON 3 - 4 20,960,418 20,961,152 735
GTAGAGTGCATTCTCCGTGGGCCTG..........GTTGACATTAATTGTGAAATGTTAG
4 EXON 4 20,961,153 20,961,302 0 0 150
GACTTTTTGGAAAGCCAAGGCATTGAATTAAATCCATCAGAGAAGATACCCCTGGATCCT
TACACTCAACTCCGGAAAGAACCTGTGCGCAAATATGTCACCCCGTCAGACTTTGACCAA
CTGAAACAGTTTCTCACCTTTGACAAACAG
INTRON 4 - 5 20,961,303 20,967,323 6,021
GTAAGCCACCTAATCAAGTAGGCTT..........AGTCTCCACTTTGGACTCCTCAAAG
5 EXON 5 20,967,324 20,967,516 0 1 193
GTCCTTCGATTCTATGCCATCTGGGACGACACGGATAGCTTGTTCGGGGAATGTCGTCAC
TACATCATTCATTACTACCTCATGGATGACACCGTGGAGATCAGAGAGGTCCACGAACGG
AACAACGGGAGAGACCCCTTCCCACTCCTCATGAACCGACAGCGTATGCCCAAAGTTTTG
GTGGAGAATGCAA
INTRON 5 - 6 20,967,517 20,972,774 5,258
GTGAGTTCAATTAAACGTGTCCTGT..........CCCTTCCAACCCTGTCTCCTATTAG
6 EXON 6 20,972,775 20,972,995 1 0 221
AGAATTTCCCAAAGTGTGTGCTGGAAATCTCAGACCAAGAGGTGCTGGAGTGGTACACTG
CCAAGGACTTCATTGTGGGGAAGCCGCTCACCATCCTGGGGAGGACCTTCTTCATCTACG
ACTGTGACCCATTCACACGACAGTTCTACAAAGACAAGTTTGGAATGCCTGACTTACCAC
CAGTTGATGTGACCAAGAAGGAGCCACCTCCAGTAAAACAG
INTRON 6 - 7 20,972,996 20,974,898 1,903
GTAATGGGATAGAAGTCCCAAATGT..........GCTCCTCTTCTTGTTTTCTCTCCAG
7 EXON 7 20,974,899 20,975,039 0 0 141
GAGTTGCCTCCTTATAATGGCTACGGACTAATTGAAGACTCTGCTCAGAATTGTTTTGCT
CTCATTCCTAAAGCTCCCAGAAAAGATGTCGTTAAAATGCTGATGAATGACAATAAGGTG
CTCCGCTACCTGGCGGCCCTG
INTRON 7 - 8 20,975,040 20,978,642 3,603
GTGAGTGCCTCTGTTAAGCAACTGC..........TATTCTCTTTCCTTCATCTTCCTAG
8 EXON 8 20,978,643 20,978,856 0 1 214
GAATCCCCTATCCCAGAAGACAAAGACCGTCGGTTTGTCTTCTCTTATTTTCTTGCCACG
GATATGATCAGTATCTTTGAGCCACCTGTTCGAAATTCTGGGATCATCGGGGGCAAATTC
CTGGGCAGGACTAAAGTTGTTAAATCATTCTCTCCAGTTGACAACCCCATCTACTACTCG
CCAAGTGACTTCTTCATCGGTGCCGTGATTGAGG
INTRON 8 - 9 20,978,857 20,979,409 553
GTAAGCCTAAACATAGCTCAGAGTT..........GAGTGTGATGCTCCTCTCTCCTCAG
9 EXON 9 20,979,410 20,979,557 1 2 148
TGTTCGGCCATCGGTTCGTCATCCTCGATACAGATGAGTATGTTTTAAAATACATGGAGA
GCAATGCTTCCCAGTATTCACCAGAAGCCCTGGCCTCAATTCAGAACCGGATCCAGAAGC
CGGAGCTCCCCGCACCAGAACTGGAAAG
INTRON 9 - 10 20,979,558 20,989,367 9,810
GTCTGTCTGACGGCCTAAGGTCAAG..........CCATCATTTCCTTTTTTCTCAACAG
10 EXON 10 20,989,368 20,989,602 2 0 235
CAAGCAAGCTACAGGAGAACCCATGGTGCAGGGTACAGAGGAATCCAAGGTGCAGGACTT
GGATACACTGATAGACCAAATCCATATGCACCTGAAATACAATTCATGCAAAGAAAACCT
CCGTGAAACATTTCAAATGTATGACAAGGACGAATCGGGATATGTGGACAGAGAGACGTT
CTTTAAAATCTGTGAAACTCTTAATGTCCCGGTCGATGACTCGTTGATTAAGGAG
INTRON 10 - 11 20,989,603 20,990,616 1,014
GTCAGTGTGGATTGTGGTCAGGGTG..........TTCTTTTTATTTTGTCCCCTTGCAG
11 EXON 11 20,990,617 20,990,841 0 - 225
TTGATCAGGCTGTGCACCCACGGAGAAGGCAGGATTAACTACTATAACTTTGTTAGAGCT
TTCTCGAACTGACCTGAACGAGAGAATGCGACAACATTTTTGACACTGAGCCGACATTGA
GAAATCTACCACCCAAGCCTTTCAATAACTCCAGAAGTGGTATTTCTTTTCCCACTCTTC
TATTTCACTATTACTCAAGTCTAAATTAATATTCAAAGAATTGAA
3' upstream sequence
GACTGGTGCCTTATTTGGAGTGGAAGGGGTACCATGATGGTTAATCGTATACTTAAGGGG
CCAAGGGGTTTCAGAACTCATCAGAGAGTATACTGATGTCTGGGAGGGTGCTTGGAATGA
GGTTAATTGTTGAACTAGTAAGCAAGTAAAACAGGCTTTAAAGTAAGGAGACTCCAGGCA
GTAGTTTGAAAGGCCTGAATATAAGCATAAACTGTCATACACCTGAGTAAGAGTGTCCTC
CCGCCCAGTTGCCTTTAAACTACCGATATGGCCTCCGCCAGCCTTCAGATGCAAACTTCC
TGTATCCTGAGCCTACAACCCTCAGCTCCTTTCCAGCTTCCAGACTCTGCCTGCACAAGC
ATACACACTCACTCATACCACATCACAGCATACATGATTACTTTTCTGATTCTTTGGAAA
AGCTTAATACAGATGTAGAAAGCTGAAGAACAGAAGGACTGATAGACTTTTCTAGACACG
TTTGAGATGTTGAAAAATAAAGCTCACAGCAGTTCTGTTACTGCTGACTAGTCAGGGGCC
TCTCTACCTACCCATCCAGTCCCTCGATATTGTATGGAGGCAAACTGCATGGGTTTCAGA
GTGGAATTCTAAGCCCATCAGTCGGATAAAAACTGGGACCTTGAGGTCTGGTTTAATGGT
AGGTAGAGTTCTTTCTTAGTATATACAAGACTCTAAATTCAATTCCCAATACCACTAAAA
CTAAAGTTAACAACAACAACAAAAAGGAATAAGTAGTAATATGGTAGGTAGAGTATAGTA
CCTATTTTCATAAGACCTGCCTACCTATAAATTAATTTACTGGACTATAATGTACATATT
TTAGAAAAGAGTTCCTTTTAGTGACTAGCACTTTCTAGACAGCCAGAGCCACTCTTTGAT
TGAAGAGAGCCATGCTAGATTCTTTCCTGCCCCTCAAAACATGCAGTAGGGAGGATGAAG
TCATGCAGGACCCAGAATGCCCAGGTCTTCTCAAAGCTGC..........

Sequence Detail Report

Gene Symbol (Gene ID) Efhc1 (ENSMUSG00000041809)
Transcript ID ENSMUST00000038447
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 649 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information