MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Shc1 (ENSMUSG00000042626)

Cross Reference

CCDS	CCDS17508.1
EMBL	AF455140, AK049357, AK155158, ...show all
Fantom	C330027D01, F630204K04
GO	GO:0000165, GO:0000187, GO:0001525, ...show all
goslim_goa	GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name	Shc1-001
OTTP	OTTMUSP00000024847
OTTT	OTTMUST00000052403
protein_id	AAA91777.2, AAC52146.1, AAH36172.1, ...show all
UCSC	uc008pzm.2

UniParc	UPI0000024969
Uniprot/SWISSPROT	P98083
Vega_transcript	OTTMUST00000052403, Shc1-001
Vega_translation	187720, OTTMUSP00000024847

Definition

protein_id:ENSMUSP00000035361
translation:

MNKLSGGGGRRTRVEGGQLGGEEWTRHGSFVNKPTRGWLHPNDKVMGPGVSYLVRYMGCV
EVLQSMRALDFNTRTQVTREAISLVCEAVPGAKGATRRRKPCSRPLSSILGRSNLKFAGM
PITLTVSTSSLNLMAADCKQIIANHHMQSISFASGGDPDTAEYVAYVAKDPVNQRACHIL
ECPEGLAQDVISTIGQAFELRFKQYLRNPPKLVTPHDRMAGFDGSAWDEEEEEPPDHQYY
NDFPGKEPPLGGVVDMRLREGAARPTLPSAQMSSHLGATLPIGQHAAGDHEVRKQMLPPP
PCPGRELFDDPSYVNIQNLDKARQAGGGAGPPNPSLNGSAPRDLFDMKPFEDALRVPPPP
QSMSMAEQLQGEPWFHGKLSRREAEALLQLNGDFLVRESTTTPGQYVLTGLQSGQPKHLL
LVDPEGVVRTKDHRFESVSHLISYHMDNHLPIISAGSELCLQQPVDRKV

Chromosome

Length
Position(start - end)

6,263
89,422,181 - 89,428,445

Orient to Chromosome

plus

Link

Location : (3:89422181-89428445)
/

Detail Map

name	Cks1b (ENSMUSG00000028044)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Cks1b note : CDC28 protein kinase 1b [Source:MGI Symbol;Acc:MGI:1889208]

name	Shc1 (ENSMUSG00000042626)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Shc1 note : src homology 2 domain-containing transforming protein C1 [Source:MGI Symbol;Acc:MGI:98296]

name	Pygo2 (ENSMUSG00000047824)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Pygo2 note : pygopus 2 [Source:MGI Symbol;Acc:MGI:1916161]

name	Cks1b (ENSMUSG00000028044)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000029679

name	Cks1b (ENSMUSG00000028044)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000107422

name	Cks1b (ENSMUSG00000028044)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000183484

name	Shc1 (ENSMUSG00000042626)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000039110

name	Shc1 (ENSMUSG00000042626)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000125036

name	Shc1 (ENSMUSG00000042626)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000191485

name	Shc1 (ENSMUSG00000042626)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000154791

name	Shc1 (ENSMUSG00000042626)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000128238

name	Shc1 (ENSMUSG00000042626)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000107417

name	Shc1 (ENSMUSG00000042626)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000094378

name	Shc1 (ENSMUSG00000042626)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000137793

name	Pygo2 (ENSMUSG00000047824)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000060061

name	Pygo2 (ENSMUSG00000047824)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000107413

name	Cks1b (ENSMUSG00000028044) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS38493.1 Uniprot/SWISSPROT:P61025 RefSeq_peptide:NP_058600 RefSeq_mRNA:NM_016904.1 Vega_transcript:Cks1b-001 Vega_transcript:OTTMUST00000052412 UCSC:uc008pzl.1 Fantom:2410005G18 Fantom:2610100F20 EMBL:AB025409 EMBL:AK010414 EMBL:AK011782 EMBL:BC076579 GO:GO:0005515 GO:GO:0007049 GO:GO:0016538 GO:GO:0045859 GO:GO:0051301 MGI_trans_name:Cks1b-001 Vega_translation:187717 Vega_translation:OTTMUSP00000024854 goslim_goa:GO:0003674 goslim_goa:GO:0007049 goslim_goa:GO:0008150 goslim_goa:GO:0030234 goslim_goa:GO:0051301 protein_id:AAH76579.1 protein_id:BAA84694.1 protein_id:BAB27837.1 protein_id:BAC25295.1 OTTP:OTTMUSP00000024854 OTTT:OTTMUST00000052412 UniParc:UPI0000003ED9
definition	note : transcript_id=ENSMUST00000029679 protein_id : ENSMUSP00000029679 translation : MSHKQIYYSDKYDDEEFEYRHVMLPKDIAKLVPKTHLMSESEWRNLGVQQSQGWVHYMIHEPEPHILLFRRPLPKKPKK

name	Cks1b (ENSMUSG00000028044) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Cks1b-002 Vega_transcript:OTTMUST00000052413 Uniprot/SPTREMBL:V9GWZ0 EMBL:AC171273 GO:GO:0007049 GO:GO:0016538 GO:GO:0045859 MGI_trans_name:Cks1b-002 Vega_translation:187719 Vega_translation:OTTMUSP00000065383 goslim_goa:GO:0003674 goslim_goa:GO:0007049 goslim_goa:GO:0008150 goslim_goa:GO:0030234 OTTP:OTTMUSP00000065383 OTTT:OTTMUST00000052413 UniParc:UPI0003B92A55
definition	note : transcript_id=ENSMUST00000183484 protein_id : ENSMUSP00000138900 translation : MSHKQIYYSDKYDDEEFEYRLVPARGLQTKESTRGACHVAQGHSQAGPENPSDV

name	Shc1 (ENSMUSG00000042626) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS17508.1 Uniprot/SWISSPROT:P98083 Vega_transcript:OTTMUST00000052403 Vega_transcript:Shc1-001 UCSC:uc008pzm.2 Fantom:C330027D01 Fantom:F630204K04 EMBL:AF455140 EMBL:AK049357 EMBL:AK155158 EMBL:BC036172 EMBL:U15784 EMBL:U46956 GO:GO:0000165 GO:GO:0000187 GO:GO:0001525 GO:GO:0005158 GO:GO:0005159 GO:GO:0005168 GO:GO:0005515 GO:GO:0005759 GO:GO:0005829 GO:GO:0005886 GO:GO:0007173 GO:GO:0007507 GO:GO:0008286 GO:GO:0016337 GO:GO:0019901 GO:GO:0030971 GO:GO:0031532 GO:GO:0040008 GO:GO:0042127 GO:GO:0046875 MGI_trans_name:Shc1-001 Vega_translation:187720 Vega_translation:OTTMUSP00000024847 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005739 goslim_goa:GO:0005829 goslim_goa:GO:0005886 goslim_goa:GO:0006464 goslim_goa:GO:0007010 goslim_goa:GO:0007155 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0019899 goslim_goa:GO:0043226 goslim_goa:GO:0048646 goslim_goa:GO:0048856 protein_id:AAA91777.2 protein_id:AAC52146.1 protein_id:AAH36172.1 protein_id:AAM61857.1 protein_id:AAM61858.1 protein_id:BAC33706.1 protein_id:BAE33083.1 OTTP:OTTMUSP00000024847 OTTT:OTTMUST00000052403 UniParc:UPI0000024969
definition	note : transcript_id=ENSMUST00000039110 protein_id : ENSMUSP00000035361 translation : MNKLSGGGGRRTRVEGGQLGGEEWTRHGSFVNKPTRGWLHPNDKVMGPGVSYLVRYMGCVEVLQSMRALDFNTRTQVTREAISLVCEAVPGAKGATRRRKPCSRPLSSILGRSNLKFAGMPITLTVSTSSLNLMAADCKQIIANHHMQSISFASGGDPDTAEYVAYVAKDPVNQRACHILECPEGLAQDVISTIGQAFELRFKQYLRNPPKLVTPHDRMAGFDGSAWDEEEEEPPDHQYYNDFPGKEPPLGGVVDMRLREGAARPTLPSAQMSSHLGATLPIGQHAAGDHEVRKQMLPPPPCPGRELFDDPSYVNIQNLDKARQAGGGAGPPNPSLNGSAPRDLFDMKPFEDALRVPPPPQSMSMAEQLQGEPWFHGKLSRREAEALLQLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTKDHRFESVSHLISYHMDNHLPIISAGSELCLQQPVDRKV

name	Shc1 (ENSMUSG00000042626) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000052407 Vega_transcript:Shc1-005 Uniprot/SPTREMBL:D3YZV5 UCSC:uc008pzm.2 EMBL:AC171273 GO:GO:0000165 GO:GO:0000187 GO:GO:0001525 GO:GO:0005158 GO:GO:0005159 GO:GO:0005168 GO:GO:0005515 GO:GO:0005622 GO:GO:0005886 GO:GO:0007173 GO:GO:0007507 GO:GO:0008286 GO:GO:0016337 GO:GO:0019901 GO:GO:0030971 GO:GO:0031532 GO:GO:0042127 GO:GO:0046875 MGI_trans_name:Shc1-005 Vega_translation:187721 Vega_translation:OTTMUSP00000024850 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005886 goslim_goa:GO:0006464 goslim_goa:GO:0007010 goslim_goa:GO:0007155 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0019899 goslim_goa:GO:0048646 goslim_goa:GO:0048856 OTTP:OTTMUSP00000024850 OTTT:OTTMUST00000052407 UniParc:UPI0000F22270
definition	note : transcript_id=ENSMUST00000125036 protein_id : ENSMUSP00000115509 translation : MGCVEVLQSMRALDFNTRTQVTREAISLVCEAVPGAKGATRRRKPCSRPLSSILGRSNLKFAGMPITLTVSTSSLNLMAADCKQIIANHHMQSISFASGGDPDTAEYVAYVAKDPVNQRACHILECPEGLAQDVISTIGQAFELRFKQYLRNPPKLVTPHDRMAGFDGSAWD

name	Shc1 (ENSMUSG00000042626) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS17508.1 Uniprot/SWISSPROT:P98083 RefSeq_peptide:NP_035498 RefSeq_mRNA:NM_011368.5 UCSC:uc008pzm.2 Fantom:C330027D01 Fantom:F630204K04 EMBL:AF455140 EMBL:AK049357 EMBL:AK155158 EMBL:BC036172 EMBL:U15784 EMBL:U46956 GO:GO:0000165 GO:GO:0000187 GO:GO:0001525 GO:GO:0005158 GO:GO:0005159 GO:GO:0005168 GO:GO:0005515 GO:GO:0005759 GO:GO:0005829 GO:GO:0005886 GO:GO:0007173 GO:GO:0007507 GO:GO:0008286 GO:GO:0016337 GO:GO:0019901 GO:GO:0030971 GO:GO:0031532 GO:GO:0040008 GO:GO:0042127 GO:GO:0046875 MGI_trans_name:Shc1-201 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005739 goslim_goa:GO:0005829 goslim_goa:GO:0005886 goslim_goa:GO:0006464 goslim_goa:GO:0007010 goslim_goa:GO:0007155 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0019899 goslim_goa:GO:0043226 goslim_goa:GO:0048646 goslim_goa:GO:0048856 protein_id:AAA91777.2 protein_id:AAC52146.1 protein_id:AAH36172.1 protein_id:AAM61857.1 protein_id:AAM61858.1 protein_id:BAC33706.1 protein_id:BAE33083.1 UniParc:UPI0000024969
definition	note : transcript_id=ENSMUST00000191485 protein_id : ENSMUSP00000140336 translation : MNKLSGGGGRRTRVEGGQLGGEEWTRHGSFVNKPTRGWLHPNDKVMGPGVSYLVRYMGCVEVLQSMRALDFNTRTQVTREAISLVCEAVPGAKGATRRRKPCSRPLSSILGRSNLKFAGMPITLTVSTSSLNLMAADCKQIIANHHMQSISFASGGDPDTAEYVAYVAKDPVNQRACHILECPEGLAQDVISTIGQAFELRFKQYLRNPPKLVTPHDRMAGFDGSAWDEEEEEPPDHQYYNDFPGKEPPLGGVVDMRLREGAARPTLPSAQMSSHLGATLPIGQHAAGDHEVRKQMLPPPPCPGRELFDDPSYVNIQNLDKARQAGGGAGPPNPSLNGSAPRDLFDMKPFEDALRVPPPPQSMSMAEQLQGEPWFHGKLSRREAEALLQLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTKDHRFESVSHLISYHMDNHLPIISAGSELCLQQPVDRKV

name	Shc1 (ENSMUSG00000042626) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000052408 Vega_transcript:Shc1-006 Uniprot/SPTREMBL:D3YXZ9 EMBL:AC171273 GO:GO:0000165 GO:GO:0000187 GO:GO:0001525 GO:GO:0005158 GO:GO:0005159 GO:GO:0005168 GO:GO:0005515 GO:GO:0005622 GO:GO:0005886 GO:GO:0007173 GO:GO:0007507 GO:GO:0008286 GO:GO:0016337 GO:GO:0019901 GO:GO:0030971 GO:GO:0031532 GO:GO:0042127 GO:GO:0046875 MGI_trans_name:Shc1-006 Vega_translation:187722 Vega_translation:OTTMUSP00000024851 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005886 goslim_goa:GO:0006464 goslim_goa:GO:0007010 goslim_goa:GO:0007155 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0019899 goslim_goa:GO:0048646 goslim_goa:GO:0048856 OTTP:OTTMUSP00000024851 OTTT:OTTMUST00000052408 UniParc:UPI0000F22271
definition	note : transcript_id=ENSMUST00000154791 protein_id : ENSMUSP00000123635 translation : MNKLSGGGGRRTRVEGGQLGGEEWTRHGSFVNKPTRGWLHPNDKVMGPGVSYLVRYMGCVEVLQSMRALDFNTRTQVTREAISLVCEAVPGAKGATRRRKIIANHHMQSISFASGGDP

name	Shc1 (ENSMUSG00000042626) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000052409 Vega_transcript:Shc1-007 Uniprot/SPTREMBL:D3Z2I8 UCSC:uc008pzm.2 EMBL:AC171273 GO:GO:0000165 GO:GO:0000187 GO:GO:0001525 GO:GO:0005158 GO:GO:0005159 GO:GO:0005168 GO:GO:0005515 GO:GO:0005622 GO:GO:0005886 GO:GO:0007173 GO:GO:0007507 GO:GO:0008286 GO:GO:0016337 GO:GO:0019901 GO:GO:0030971 GO:GO:0031532 GO:GO:0042127 GO:GO:0046875 MGI_trans_name:Shc1-007 Vega_translation:187723 Vega_translation:OTTMUSP00000024852 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005886 goslim_goa:GO:0006464 goslim_goa:GO:0007010 goslim_goa:GO:0007155 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0019899 goslim_goa:GO:0048646 goslim_goa:GO:0048856 OTTP:OTTMUSP00000024852 OTTT:OTTMUST00000052409 UniParc:UPI0000F22272
definition	note : transcript_id=ENSMUST00000128238 protein_id : ENSMUSP00000119293 translation : MNKLSGGGGRRTRVEGGQLGGEEWTRHGSFVNKPTRGWLHPNDKVMGPGVSYLVRYMGCVEVLQSMRALDFNTRTQVTREAISLVCEAVPGAKGATRRRKPCSRPLSSILGRSNLKFAGMPITLTVSTSSLNLMAADCKQDTAEYVAYVAKDPVNQRACHILECPEGLAQDVISTIGQAFELRFKQYLRNPPKLVTPHDRMAGFDGSAWDEEEEEPPDHQYYNDFPGKEPPLGGVVDMRLREGAARPTLPSAQMSSHLGATL

name	Shc1 (ENSMUSG00000042626) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SWISSPROT:P98083 RefSeq_peptide_predicted:XP_006501275.1 RefSeq_peptide_predicted:XP_006501276.1 Vega_transcript:OTTMUST00000052405 Vega_transcript:Shc1-003 UCSC:uc008pzm.2 Fantom:C330027D01 Fantom:F630204K04 EMBL:AF455140 EMBL:AK049357 EMBL:AK155158 EMBL:BC036172 EMBL:U15784 EMBL:U46956 GO:GO:0000165 GO:GO:0000187 GO:GO:0001525 GO:GO:0005158 GO:GO:0005159 GO:GO:0005168 GO:GO:0005515 GO:GO:0005759 GO:GO:0005829 GO:GO:0005886 GO:GO:0007173 GO:GO:0007507 GO:GO:0008286 GO:GO:0016337 GO:GO:0019901 GO:GO:0030971 GO:GO:0031532 GO:GO:0040008 GO:GO:0042127 GO:GO:0046875 MGI_trans_name:Shc1-003 Vega_translation:187724 Vega_translation:OTTMUSP00000024849 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005739 goslim_goa:GO:0005829 goslim_goa:GO:0005886 goslim_goa:GO:0006464 goslim_goa:GO:0007010 goslim_goa:GO:0007155 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0019899 goslim_goa:GO:0043226 goslim_goa:GO:0048646 goslim_goa:GO:0048856 protein_id:AAA91777.2 protein_id:AAC52146.1 protein_id:AAH36172.1 protein_id:AAM61857.1 protein_id:AAM61858.1 protein_id:BAC33706.1 protein_id:BAE33083.1 OTTP:OTTMUSP00000024849 OTTT:OTTMUST00000052405 UniParc:UPI0000D7A50B
definition	note : transcript_id=ENSMUST00000107417 protein_id : ENSMUSP00000103040 translation : MGPGVSYLVRYMGCVEVLQSMRALDFNTRTQVTREAISLVCEAVPGAKGATRRRKPCSRPLSSILGRSNLKFAGMPITLTVSTSSLNLMAADCKQIIANHHMQSISFASGGDPDTAEYVAYVAKDPVNQRACHILECPEGLAQDVISTIGQAFELRFKQYLRNPPKLVTPHDRMAGFDGSAWDEEEEEPPDHQYYNDFPGKEPPLGGVVDMRLREGAARPTLPSAQMSSHLGATLPIGQHAAGDHEVRKQMLPPPPCPGRELFDDPSYVNIQNLDKARQAGGGAGPPNPSLNGSAPRDLFDMKPFEDALRVPPPPQSMSMAEQLQGEPWFHGKLSRREAEALLQLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTKDHRFESVSHLISYHMDNHLPIISAGSELCLQQPVDRKV

name	Shc1 (ENSMUSG00000042626) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS50962.1 Uniprot/SWISSPROT:P98083 RefSeq_peptide:NP_001106802 RefSeq_mRNA:NM_001113331.2 Vega_transcript:OTTMUST00000052404 Vega_transcript:Shc1-002 UCSC:uc008pzn.2 Fantom:C330027D01 Fantom:F630204K04 EMBL:AF455140 EMBL:AK049357 EMBL:AK155158 EMBL:BC036172 EMBL:U15784 EMBL:U46956 GO:GO:0000165 GO:GO:0000165 GO:GO:0000187 GO:GO:0000187 GO:GO:0000187 GO:GO:0001525 GO:GO:0001666 GO:GO:0001784 GO:GO:0005158 GO:GO:0005158 GO:GO:0005159 GO:GO:0005159 GO:GO:0005168 GO:GO:0005168 GO:GO:0005515 GO:GO:0005515 GO:GO:0005634 GO:GO:0005737 GO:GO:0005759 GO:GO:0005829 GO:GO:0005886 GO:GO:0005886 GO:GO:0005886 GO:GO:0007173 GO:GO:0007507 GO:GO:0007568 GO:GO:0008286 GO:GO:0009636 GO:GO:0010008 GO:GO:0014070 GO:GO:0016337 GO:GO:0019901 GO:GO:0030036 GO:GO:0030182 GO:GO:0030971 GO:GO:0031100 GO:GO:0031175 GO:GO:0031532 GO:GO:0032403 GO:GO:0032868 GO:GO:0032869 GO:GO:0035094 GO:GO:0040008 GO:GO:0042127 GO:GO:0042542 GO:GO:0045907 GO:GO:0046875 GO:GO:0046875 GO:GO:0048661 GO:GO:0051219 GO:GO:0051384 GO:GO:0051721 MGI_trans_name:Shc1-002 Vega_translation:187725 Vega_translation:OTTMUSP00000024848 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005739 goslim_goa:GO:0005829 goslim_goa:GO:0005886 goslim_goa:GO:0006464 goslim_goa:GO:0007010 goslim_goa:GO:0007155 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0019899 goslim_goa:GO:0043226 goslim_goa:GO:0048646 goslim_goa:GO:0048856 protein_id:AAA91777.2 protein_id:AAC52146.1 protein_id:AAH36172.1 protein_id:AAM61857.1 protein_id:AAM61858.1 protein_id:BAC33706.1 protein_id:BAE33083.1 OTTP:OTTMUSP00000024848 OTTT:OTTMUST00000052404 UniParc:UPI0000028F4C
definition	note : transcript_id=ENSMUST00000094378 protein_id : ENSMUSP00000091940 translation : MDLLPPKPKYNPLRNESLSSLEEGASGSTPPEELPSPSASSLGPILPPLPGDDSPTTLCSFFPRMSNLKLANPAGGRLGPKGEPGKAAEDGEGSAGAALRDSGLLPLLQDMNKLSGGGGRRTRVEGGQLGGEEWTRHGSFVNKPTRGWLHPNDKVMGPGVSYLVRYMGCVEVLQSMRALDFNTRTQVTREAISLVCEAVPGAKGATRRRKPCSRPLSSILGRSNLKFAGMPITLTVSTSSLNLMAADCKQIIANHHMQSISFASGGDPDTAEYVAYVAKDPVNQRACHILECPEGLAQDVISTIGQAFELRFKQYLRNPPKLVTPHDRMAGFDGSAWDEEEEEPPDHQYYNDFPGKEPPLGGVVDMRLREGAARPTLPSAQMSSHLGATLPIGQHAAGDHEVRKQMLPPPPCPGRELFDDPSYVNIQNLDKARQAGGGAGPPNPSLNGSAPRDLFDMKPFEDALRVPPPPQSMSMAEQLQGEPWFHGKLSRREAEALLQLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTKDHRFESVSHLISYHMDNHLPIISAGSELCLQQPVDRKV

name	Shc1 (ENSMUSG00000042626) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000052410 Vega_transcript:Shc1-008 Uniprot/SPTREMBL:D3Z5U6 UCSC:uc008pzn.2 EMBL:AC171273 GO:GO:0000165 GO:GO:0000187 GO:GO:0001525 GO:GO:0005158 GO:GO:0005159 GO:GO:0005168 GO:GO:0005515 GO:GO:0005622 GO:GO:0005886 GO:GO:0007173 GO:GO:0007507 GO:GO:0008286 GO:GO:0016337 GO:GO:0019901 GO:GO:0030971 GO:GO:0031532 GO:GO:0042127 GO:GO:0046875 MGI_trans_name:Shc1-008 Vega_translation:187726 Vega_translation:OTTMUSP00000024853 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005886 goslim_goa:GO:0006464 goslim_goa:GO:0007010 goslim_goa:GO:0007155 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0019899 goslim_goa:GO:0048646 goslim_goa:GO:0048856 OTTP:OTTMUSP00000024853 OTTT:OTTMUST00000052410 UniParc:UPI0000F22230
definition	note : transcript_id=ENSMUST00000137793 protein_id : ENSMUSP00000117190 translation : MNKLSGGGGRRTRVEGGQLGGEEWTRHGSFVNKPTRGWLHPNDKVMGPGVSYLVRYMGCVEVLQSMRALDFNTRTQVTREAISLVCEAVPGAKGATRRRKPCSRPLSSILGRSNLKFAGMPITLTVSTSSLNLMAADCKQIIANHHMQSISFASGGDPDTAEYVAYVAKDPVNQRACHILECPEGLAQDVISTIGQAFELRFKQYLRNPPKLVTPHDRMAGFDGSAWDEEEEEPPDHQYYNDFPGKEPPLGGVVDMRLREGAARPTLPSAQMSSHLGATL

name	Pygo2 (ENSMUSG00000047824) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	RefSeq_peptide:NP_001280697 RefSeq_mRNA:NM_001293768.1 Vega_transcript:OTTMUST00000052396 Vega_transcript:Pygo2-001 Uniprot/SPTREMBL:Q80V76 UCSC:uc008pzo.2 EMBL:AC171273 EMBL:AY486147 EMBL:BC025640 GO:GO:0001701 GO:GO:0001822 GO:GO:0002088 GO:GO:0003682 GO:GO:0005515 GO:GO:0005634 GO:GO:0007286 GO:GO:0007289 GO:GO:0007420 GO:GO:0008270 GO:GO:0009791 GO:GO:0016055 GO:GO:0030879 GO:GO:0033599 GO:GO:0035034 GO:GO:0035065 GO:GO:0035563 GO:GO:0042393 GO:GO:0048589 GO:GO:0051569 GO:GO:0060021 GO:GO:0060070 MGI_trans_name:Pygo2-001 Vega_translation:187727 Vega_translation:OTTMUSP00000024844 goslim_goa:GO:0000003 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0009790 goslim_goa:GO:0030154 goslim_goa:GO:0030234 goslim_goa:GO:0040007 goslim_goa:GO:0042393 goslim_goa:GO:0043167 goslim_goa:GO:0043226 goslim_goa:GO:0048856 protein_id:AAH25640.1 protein_id:AAS55435.1 OTTP:OTTMUSP00000024844 OTTT:OTTMUST00000052396 Reactome:R-MMU-162582 Reactome:R-MMU-195721 Reactome:R-MMU-201681 Reactome:R-MMU-201722 Reactome:R-MMU-3769402 UniParc:UPI0000006BF4
definition	note : transcript_id=ENSMUST00000060061 protein_id : ENSMUSP00000053672 translation : MAASAPPPPDKLEGGSGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPPTPMVDHLVASNPFEDDFGAPKVGGAGPPFLGSPVPFGGFRVQGGMAGQVPPGYGTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQSLGQNFSPPGGQVMPGPVGGFGPMISPTMGQPPRGELGPPPLPQRFTQPGAPFGPSLQRPGQGLPSLPPNTSPFPGPDPGFPGPGGEDGGKPLNPPAPTAFPQEPHSGSPAAAVNGNQPSFPPSSSGRGGGTPDANSLAPPGKAGGGSGPQPPPGLVYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEIQSVYIREGMGQLVAANDG

name	Pygo2 (ENSMUSG00000047824) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS38494.1 RefSeq_peptide:NP_001280692 RefSeq_peptide:NP_001280695 RefSeq_peptide:NP_001280696 RefSeq_peptide:NP_081145 RefSeq_mRNA:NM_001293763.1 RefSeq_mRNA:NM_001293766.1 RefSeq_mRNA:NM_001293767.1 RefSeq_mRNA:NM_026869.3 RefSeq_mRNA_predicted:XM_006502004 RefSeq_mRNA_predicted:XM_006502005 RefSeq_mRNA_predicted:XM_006502006 RefSeq_peptide_predicted:XP_006502067.1 Vega_transcript:OTTMUST00000052397 Vega_transcript:Pygo2-002 Uniprot/SPTREMBL:Q3V113 UCSC:uc008pzp.2 Fantom:4922505G08 EMBL:AC171273 EMBL:AK132759 GO:GO:0001701 GO:GO:0001822 GO:GO:0002088 GO:GO:0003682 GO:GO:0005515 GO:GO:0005634 GO:GO:0007286 GO:GO:0007289 GO:GO:0007420 GO:GO:0008270 GO:GO:0009791 GO:GO:0016055 GO:GO:0030879 GO:GO:0033599 GO:GO:0035034 GO:GO:0035065 GO:GO:0035563 GO:GO:0042393 GO:GO:0048589 GO:GO:0051569 GO:GO:0060021 GO:GO:0060070 MGI_trans_name:Pygo2-002 Vega_translation:187728 Vega_translation:OTTMUSP00000024845 goslim_goa:GO:0000003 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0009790 goslim_goa:GO:0030154 goslim_goa:GO:0030234 goslim_goa:GO:0040007 goslim_goa:GO:0042393 goslim_goa:GO:0043167 goslim_goa:GO:0043226 goslim_goa:GO:0048856 protein_id:BAE21340.1 OTTP:OTTMUSP00000024845 OTTT:OTTMUST00000052397 Reactome:R-MMU-162582 Reactome:R-MMU-195721 Reactome:R-MMU-201681 Reactome:R-MMU-201722 Reactome:R-MMU-3769402 UniParc:UPI00001C2BFA
definition	note : transcript_id=ENSMUST00000107413 protein_id : ENSMUSP00000103036 translation : MKSPEKKRRKSNTQGPAYSHLTEFAPPPTPMVDHLVASNPFEDDFGAPKVGGAGPPFLGSPVPFGGFRVQGGMAGQVPPGYGTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQSLGQNFSPPGGQVMPGPVGGFGPMISPTMGQPPRGELGPPPLPQRFTQPGAPFGPSLQRPGQGLPSLPPNTSPFPGPDPGFPGPGGEDGGKPLNPPAPTAFPQEPHSGSPAAAVNGNQPSFPPSSSGRGGGTPDANSLAPPGKAGGGSGPQPPPGLVYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEIQSVYIREGMGQLVAANDG

name
type	STS
link
xref	UniSTS_NUM:273016 UniSTS:PMC316585P1
definition	note : map_weight=1 standard_name : PMC316585P1

name
type	misc_feature
link
xref
definition	note : contig AC171273.1 1..225304(-1)

name	Shc1 (ENSMUSG00000042626)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000052406 Vega_transcript:OTTMUST00000052406 MGI_trans_name:Shc1-004 OTTT:OTTMUST00000052406
definition	note : retained_intron note : transcript_id=ENSMUST00000153334

name	Shc1 (ENSMUSG00000042626)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000052411 Vega_transcript:OTTMUST00000052411 MGI_trans_name:Shc1-009 OTTT:OTTMUST00000052411
definition	note : processed_transcript note : transcript_id=ENSMUST00000146306

name	Pygo2 (ENSMUSG00000047824)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000052399 Vega_transcript:OTTMUST00000052399 MGI_trans_name:Pygo2-004 OTTT:OTTMUST00000052399
definition	note : processed_transcript note : transcript_id=ENSMUST00000136573

name	Pygo2 (ENSMUSG00000047824)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000052400 Vega_transcript:OTTMUST00000052400 MGI_trans_name:Pygo2-005 OTTT:OTTMUST00000052400
definition	note : processed_transcript note : transcript_id=ENSMUST00000146037

name	Pygo2 (ENSMUSG00000047824)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000052401 Vega_transcript:OTTMUST00000052401 MGI_trans_name:Pygo2-006 OTTT:OTTMUST00000052401
definition	note : processed_transcript note : transcript_id=ENSMUST00000133680

name	Pygo2 (ENSMUSG00000047824)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000052398 Vega_transcript:OTTMUST00000052398 MGI_trans_name:Pygo2-003 OTTT:OTTMUST00000052398
definition	note : processed_transcript note : transcript_id=ENSMUST00000125830

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Shc1 (ENSMUSG00000042626)
Transcript ID	ENSMUST00000039110

Reports
substitution
cSNPs	4
Insertion	9
Deletion	12
SNPs	-1kb 89413463(c.-8718C>T), 89413493(c.-8688A>C), 89413508(c.-8673G>T), 89413840(c.-8341A>G), 89413993(c.-8188A>G), 89414372(c.-7809G>A), 89414442(c.-7739C>T), 89414594(c.-7587C>A), 89414700(c.-7481T>C), 89414701(c.-7480C>T), 89415690(c.-6491G>A), 89415695(c.-6486C>T), 89415698(c.-6483G>A), 89415836(c.-6345G>A), 89415841(c.-6340G>A), 89415842(c.-6339C>A), 89416908(c.-5273G>A), 89417351(c.-4830A>G), 89417435(c.-4746A>G), 89417623(c.-4558C>A), 89418190(c.-3991A>G), 5'UTR CDS 89423556(c.285G>A), 89424866(c.627A>G), 89426656(c.795C>T), 89427300(c.1135C>T), 3'UTR 89418613(c.-100G>A), 89418617(c.-96G>A), 89428481(c.36T>C), 89428635(c.190G>C), 89428712(c.267C>T), 89428846(c.401A>G), 89429088(c.643T>A), 89429422(c.977T>C), 89429510(c.1065C>A), 89429650(c.1205T>C), 89429703(c.1258T>A), 89429904(c.1459G>A), INTRON 89419175(c.-4+466T>C), 89419435(c.-4+726A>G), 89419481(c.-4+772C>T), 89419529(c.-4+820T>G), 89419574(c.-4+865T>C), 89419813(c.-4+1104T>C), 89419865(c.-4+1156C>T), 89420346(c.-4+1637T>C), 89420362(c.-4+1653T>A), 89420363(c.-4+1654T>C), 89420837(c.-3-1341T>A), 89420871(c.-3-1307G>A), 89420895(c.-3-1283C>T), 89421661(c.-3-517C>G), 89422438(c.165+93C>T), 89423635(c.301-62T>C), 89423693(c.301-4T>C), 89423894(c.420+78T>C), 89425765(c.654-750G>A), 89426009(c.654-506C>T), 89427121(c.1042+51T>C), 89427988(c.1282-329A>T), 89428012(c.1282-305C>T), 89428084(c.1282-233C>A), 89428287(c.1282-30T>C), +1kb 89430031(c.1586T>A), 89430181(c.1736T>C), 89430193(c.1748G>C), 89430248(c.1803C>G), 89430533(c.2088G>C), 89430762(c.2317G>A), 89431388(c.2943G>A), 89431644(c.3199C>T), 89431812(c.3367G>C), 89431916(c.3471A>G), 89432281(c.3836G>T), 89432352(c.3907G>T), 89432563(c.4118C>T), 89432857(c.4412A>G), 89433094(c.4649T>C), 89433151(c.4706G>A), 89433361(c.4916C>T), 89434090(c.5645G>C), 89434192(c.5747C>T), 89434236(c.5791T>G), 89434583(c.6138A>T), 89434662(c.6217C>T), 89434765(c.6320C>T), 89435012(c.6567C>T),
Insertions	-1kb 89413509 (c.-8672_-8671insT), 89418067 (c.-4115_-4114dupCC), 5'UTR CDS 3'UTR 89429156 (c.713dupC), INTRON 89424159 (c.421-27dupC), 89425675 (c.653+806_653+811dupGTGTGT), 89426204 (c.654-308_654-299dupTTTTGTTTTT), +1kb 89432100 (c.3655dupT), 89434304 (c.5859_5860insCCCCCTCCCCCCC), 89434888 (c.6443_6444insC),
Deletions	-1kb 89417274 (c.-4906_-4904delAAA), 89418118 (c.-4062_-4061delCT), 89418122 (c.-4058_-4057delCT), 5'UTR CDS 3'UTR 89428588 (c.148delA), 89428715 (c.271delC), INTRON 89424737 (c.527-27_527-26delTC), 89426919 (c.911-19delG), 89427806 (c.1281+381_1281+385delGTTTT), +1kb 89431279 (c.2835delA), 89432132 (c.3688_3696delTTGTTGTTG), 89432250 (c.3806_3808delTTG), 89434279 (c.5835delC),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	4
non-synonymous num	0
synonymous substitutions	89423556 (p.Ala95Ala), 89424866 (p.Pro209Pro), 89426656 (p.Pro265Pro), 89427300 (p.Leu379Leu),
non-synonymous substitutions
B6 transcript (ENSMUST00000039110)	MNKLSGGGGRRTRVEGGQLGGEEWTRHGSFVNKPTRGWLHPNDKVMGPGVSYLVRYMGCV EVLQSMRALDFNTRTQVTREAISLVCEAVPGAKGATRRRKPCSRPLSSILGRSNLKFAGM PITLTVSTSSLNLMAADCKQIIANHHMQSISFASGGDPDTAEYVAYVAKDPVNQRACHIL ECPEGLAQDVISTIGQAFELRFKQYLRNPPKLVTPHDRMAGFDGSAWDEEEEEPPDHQYY NDFPGKEPPLGGVVDMRLREGAARPTLPSAQMSSHLGATLPIGQHAAGDHEVRKQMLPPP PCPGRELFDDPSYVNIQNLDKARQAGGGAGPPNPSLNGSAPRDLFDMKPFEDALRVPPPP QSMSMAEQLQGEPWFHGKLSRREAEALLQLNGDFLVRESTTTPGQYVLTGLQSGQPKHLL LVDPEGVVRTKDHRFESVSHLISYHMDNHLPIISAGSELCLQQPVDRKV*
MSMv4 transcript	MNKLSGGGGRRTRVEGGQLGGEEWTRHGSFVNKPTRGWLHPNDKVMGPGVSYLVRYMGCV EVLQSMRALDFNTRTQVTREAISLVCEAVPGAKGATRRRKPCSRPLSSILGRSNLKFAGM PITLTVSTSSLNLMAADCKQIIANHHMQSISFASGGDPDTAEYVAYVAKDPVNQRACHIL ECPEGLAQDVISTIGQAFELRFKQYLRNPPKLVTPHDRMAGFDGSAWDEEEEEPPDHQYY NDFPGKEPPLGGVVDMRLREGAARPTLPSAQMSSHLGATLPIGQHAAGDHEVRKQMLPPP PCPGRELFDDPSYVNIQNLDKARQAGGGAGPPNPSLNGSAPRDLFDMKPFEDALRVPPPP QSMSMAEQLQGEPWFHGKLSRREAEALLQLNGDFLVRESTTTPGQYVLTGLQSGQPKHLL LVDPEGVVRTKDHRFESVSHLISYHMDNHLPIISAGSELCLQQPVDRKV*
homology	100.00 (470 / 470)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Shc1 (ENSMUSG00000042626)
Transcript ID	ENSMUST00000039110


..........GACAAGGTTCCATCTGTAGTGTGATCTGGGCTGGACCCTATGACAATCCT
GCAGCCTCAGCTTCCAGAATGCTGAGATTAAAGATGTGAGCTACCGTACCAGCTTATCTT
GCACCTTAACAGAAAACACTTGAAACCTCTATGCGCGCCATGAATGATCAAGTATTTGAA
AGGTATCTACACACGGCCACAGTCTTCATGCCACTCCAAGTCCTGTAAAAGCCTATCTAA
AACAAGGCTGACAACTACTCATCTTTTTTATAAACTAAAAACCACCAACACTGAGGCTCT
CTTAGAACCGTCCTTTCATCAAGAGCATGAAACTTTCAGTTCTGCACGGGCTACCTTCTT
TCTCCCAGCAGACTTTGAGATTTCAGTAACGCGAGCAGTTCCTATTAGGGAAATCGCCAC
AACAAAGTTGCTTTAGTGATGTGAATTCCCAGAGGTAAAACTGATCAGAGCTACAAGACG
CTTCAATTTAACAGCCGGCCAACTCTAAGTTCCCTTTCATTGTTTTACATCCTCCGTCCA
CCTTTTGCGCATGTGCTTTGCTGCTGTACCCAATCCCACCCCCACCCCACTCCCCGGTAA
TTCCTTGCGCACGCGCCCGTTCTACACTGTCCCCCGCCCCCATCCCCCGCCTCCCACTCC
GGCCTAGGTAACTAACTCCTCGCGTGCTCTCTTTTGTCTGTAGTCCCCGCGCCGGCACTA
ACCGGTATTCGAACTCCTCGTCGTCGTATTTGTCCGAGTAGTAGATTTGTTTGTGGGACA
TGATTGCTCTGTCCGAGGGCGCTCAGCCCCGCGCCGCAGGCCTCCAGACAACTCCCAGCA
GCACGCGCTCCCACCCTCTTTGGCCTCGCTTTCAAACACACCGCCCGCACTTCCTATTGG
TCTCTGCGGCCGAAGGCGGGACAGCTCCATTTTGAAGTCCTCGATTGGCTTGCTTTGGCG
TCTCTTCAAGTCGTAAATGGAGTGCTGTGCTCAGGTTTCTGAAGAATGAG
CTGGGTCAAACTAGGATTCTCATTGGCTCTCACTGCGCCCCTTGAGCCTGCTGGCGCAGCCATTGGCCAACTTTGGAAAGCAGACGGGTAAAGGAGGGACAGCGAGGTAGGGGGTCAGGGGTTAGTGAGGCCGGAAGTGAGTGTAATAAAGTTTGTCTGGGGAGGCCCAGACTGAGGTGAAAGTTGGGGCGGTGACTTAAGCAGACAGTTGCGTGATCCGGAACCAGATCGGCCCGCGGTGCGGTGCGGAGACTCCATGAGACCCTG
GTAAGTCTAGACTTTCTTTCTGTGG..........CTCAGGCCTCTTGCCCCTCCTCCAG
GACATGAACAAGCTGAGTGGAGGCGGCGGGCGCAGGACTCGGGTAGAAGGGGGCCAGCTGGGGGGCGAGGAGTGGACCAGACACGGGAGCTTTGTCAATAAGCCCACACGAGGCTGGCTGCATCCCAACGACAAAGTCATGGGACCTGGGGTTTCCTACTTGGTTCGG
GTGAGTGCATACCCCCCTCCCACTC..........CCATTCTTCCCTCCTTCCCCTACAG
TACATGGGCTGTGTGGAGGTCTTACAGTCAATGCGAGCCCTTGACTTCAATACCCGGACTCAGGTCACCAG
GTTAGTGGGAAGGCGGGTATATTGC..........GGTCTGAGTACTCCTGTTTCTCCAG
GGAGGCCATCAGTTTGGTGTGTGAAGCTGTGCCTGGTGCCAAAGGGGCAACAAGGAGGAGAAAG
GTATATGTGGTGGTTGGGGCTGGGT..........TCTGAGACTCTGGGCCCTTTCCTAG
CCTTGTAGCCGCCCACTCAGCTCCATCCTGGGGAGGAGTAACCTGAAGTTTGCTGGAATGCCAATCACTCTCACTGTGTCTACCAGCAGCCTTAACCTCATGGCAGCCGACTGCAAACAG
GTAGGTAGGGCTGCTGAAAGGGACC..........CCTTCTCCATCCCCACCCTCATCAG
ATCATTGCCAACCATCACATGCAATCTATCTCTTTCGCGTCCGGTGGGGATCCG
GTGAGTTGGGGACCAGAGGAAAGAC..........GGTCTCCTGAATCTACCCTCTCCAG
GACACAGCTGAGTATGTTGCCTATGTTGCCAAAGACCCTGTGAATCAGAGAG
GTGAGGCTTGCGGGCAGCACTGGGT..........ACTGGTGGTCTCCACTGTGTCCCAG
CCTGCCATATCCTGGAGTGTCCTGAAGGGCTTGCTCAGGATGTCATCAGCACCATCGGGCAGGCCTTTGAGTTGCGCTTCAAACAGTATCTCAGGAATCCGCCGAAGCTGGTCACCCCCCATGACAG
GTGAGCTGGTGGGAGAGGGCGAGGC..........TCTTCTCTCATCCTTCTCTTTTCAG
GATGGCTGGCTTTGATGGCTCAGCTTGGGATGAGGAGGAAGAAGAGCCCCCTGACCATCAGTACTACAATGACTTTCCAGGGAAGGAACCCCCTCTTGGTGGGGTGGTAGATATGAGGCTTCGGGAAGGGGCTGCTCGACCTACTCTGCCTAGTGCCCAGATGTCCAGCCACTTGGGAGCTACACTG
GTAAGGAGCCAGGATGGAGATGCTT..........CTCACCCAATTTTCTTCTTCTGTAG
CCTATAGGGCAGCATGCTGCAGGAGACCATGAAGTCCGTAAACAGATGTTGCCTCCGCCGCCTTGCCCAG
GTGAGCACAGTTTGCTGATACGGAC..........GATGCTGTCTTTTTTTCCTTAACAG
GCAGAGAACTCTTCGATGACCCCTCCTATGTCAACATCCAGAATCTAGACAAGGCCCGGCAGGCTGGGGGTGGGGCTGGGCCCCCAAATCCTTCTCTTAATGGCAGTGCACCCCGAGACCTTTTTGACATGA
GTGAGTGAGTCTCTTGTAGCCCCAC..........CCCAGCTGTCTCTCTACACCCCTAG
AGCCCTTTGAAGATGCACTTCGGGTGCCACCCCCACCGCAGTCCATGTCCATGGCTGAGCAGCTGCAAGGGGAGCCCTGGTTCCACGGGAAGTTGAGCCGGAGGGAGGCCGAGGCGCTGCTGCAGCTCAATGGTGACTTCTTGGTGCGAGAGAGCACGACCACGCCTGGCCAGTATGTGCTCACTGGCCTGCAGAGTGGGCAGCCCAAGCACTTGCTGCTGGTGGACCCTGAAGGTGTG
GTAAGTGTGACAGAGGTGTGGCAGG..........CCAACCTTCTCTCCCTGCCTCCCAG
GTTCGGACAAAGGATCACCGCTTTGAGAGTGTCAGTCACCTGATCAGCTACCACATGGACAATCACTTGCCCATCATCTCTGCGGGCAGCGAACTGTGCCTACAGCAACCCGTGGATCGGAAAGTGTGATCCTTCTCAGCTTCTCCAACAGGATGCTCTCCATTCCCGTCTCCCGTATTCTCTAACTTGTGGGACCTCTGTTTTGTGGGTCTGGCCTTGGGTGGGAACTGGGAGCAACGAGGACATGGGTTTAGTGCCCACTTGAGAGAGAGAAAAAGAGGGTTTCAGTAAGGAGCCTGGGGTAGCATCCTGCCTCTGCCCAAACTTCACCAAAGTATTAATGTGCAGAGTGGTCCCTTGTCTGGGCCTTGCCTGTGCCAACCTGATGCCCTTCCCCCCCAAAGGGTGGGTTCTTATAATGGAAAATGCCCTGTGATGATAGGCCCAGTGGAGCAACTGCCCTTTGGGGGAAGGGAAATAATTATACCTCTGGTTTACTCCTGGGTCTTCAGGGTACCCCAGATCCCGCGTAACATATCCCACTCCCTCTGCTTCCCCTTAAACTTTGTGCCTTTGACTATCATAGGTCTGCAGATACTTAATGCAGAGTTCTCAGGCCCTTCACGTGTGGACAGGGGTTACTGCCACCTTGGCTTCTGGAGCCCTGTCCTATTCAGCACCCCTTCCTGTGTCTAGGGAGAATAGGGACAGGAGTGGCCGCTATCTGCTCTGCCTTTCGGATGTGCAGCCCTTAAGAGATTGCCCCAAGCCAGAATATGGTGGCGCACGCCTTTAATCACAGCACTCAGGAGGCAGAGACAGGAGGAATTGTGAGGCCATCCGATCTACAACAGAGTGAGTTCCAGGACAGCCAGGGCTATGGAGAGAGAACCTGTCTCCAAAAACCAAAAAGAGCGATTACCCCAGAGCCTTCTTCCTGATGGTAGCGGGGAGGGGCAGGACTGGACCCATCTTGCTCAGTGCCTCCTGACCTCAATGCCTTTCCTCCAAGGGGTCTGTATACATTTCTCAAGCCTGCTCCTCCCATGTTTGCATGTGTGTTATAGTCTACAGCCAAAGTATAGCCCTCACTGTAACCCCATCCCGCCTCCCTCCTTTGGGATAGGTGTGTGCGTCTGACTTGGGCCTCCAGGGTGTGTACAGTCAGTGTGGGTTTTGTGGAGGCAATAAGAATGAAGCAGTAGACAATCCCCAATACCATTTGCAGGTCTGGAACTGCACTCTCTTTTTTAAAAAACATGTATACATTTTAGGGCTGTAGATTTATTTTCCTGGTTTTGTTTTTCATTGCTGACTTTTGAGCACAGAATTACGATAATCAATTACATTTATACATCACCTCGATGACTTTTCCAAACTTTTATTATTTTTTTTAAACAACTGTTGGGATTTTACTCCCTGGCCTTAACTAGGACAGGATTGTACCCCACTCCTCCCCCCCCCCTTTTTCTTTTTCGCCAAGACAACTGAGCAGAAATTTGGCTGAGCAGTGTTGTGGGACTATGATGTGATAGTTTTAGATCCTACCTTCTGCTTTCGGGCAGCTGCAGCCAGCACAGAAACCTTACAAGCTCACTCTGTGTGTAGGCTTTCTGGACAAGGAATGGTCGCCAAATTTTTGGTTTGGATGTCTTATACCAAAGGGAAATAGTCTTCATTAAAGTTCGTATTTCTTTTA
CCTCGGCCTCTCAACACCTCTGGAAAGTCTGATTGATGGGGGCTGTCTGTGGGAGGTGGT
GACGGACCCCATCTGGGCTAGGTCCAGTGGGCTCCAAGCCAGCGCCAGCCCGCAGGCACC
AGTTTGCAGAGATTTGGGGAGCTGCGAGGCTGTGCGGTAGGGACGCATCTGCAAGGCCAC
TGGCTCGCGGCGGGAAGGGGCGTGTCCGGACCGCCCCCAGGCCCACCCGCAGGTCGCACG
GCCCCTGTCGAGTGGTGCGTTCCACTCTGCTACCGGGCTAGCTGGGCGGCGACAGGCGCA
CTTCGGAGGAGTGGCGTGGCGAGGCCCAGCCTTCCTGGGTGCGGCGTCTGGGCCCTTCCC
TGCTTTCCCTCCCCACCGCGTTCCGTGGTGGTGACCCATTGGAGTTCCGGTTCCGGTTGC
TGTGGCTGCGGGCGGGCGGTGAGTCTGGAGCAGGCGCGCAGTTGGTGCAACGGCTCTGTG
CTTTCCCCCTCGGCGTGGCTAGGGCTTGCTGCTGCTCCGGGGGGCTGCGCTGCCCCTGAC
TCCCCTCCGGGCGATGGTGCGGCCCGAGGACGCCTCCATCCCCCGCCGACGCTGACTCGG
GTCCCCAATCCATGGCCGCCTCGGCGCCGCCCCCACCGGACAAGCTGGAGGGAGGCAGCG
GCCCCGCACCGCCCCCCGCGCCGCCCAGCACCGGGAGGAAGCAGGGCAAGGCCGGTGAGA
GCGCAGAGAAGGGCAGGGGCTGTTGAAGCCCGGGACCCTGGAACCTCGGATGGAACGGTT
GGGGGATGGGGGAGGTTGCCTAGGAGCCTGGAGGTAGCCTCAGGTGAGAAGGGTCAGTGG
TTGGAGACAGGTGTCACAGAACACTTCAGGTTTTGGATGACACTGAATTGAGACAAACCT
GGTAGTTTCAAGAGATTGGGTTATCTTTGATTTGCAGGAAGACGTAGCTGAGAGTATAGT
CATACTAGCCATTTTTCATATCTCACCCCTGTTTCTTAAA..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........GACAAGGTTCCATCTGTAGTGTGATCTGGGCTGGACCCTATGACAATCCT GCAGCCTCAGCTTCCAGAATGCTGAGATTAAAGATGTGAGCTACCGTACCAGCTTATCTT GCACCTTAACAGAAAACACTTGAAACCTCTATGCGCGCCATGAATGATCAAGTATTTGAA AGGTATCTACACACGGCCACAGTCTTCATGCCACTCCAAGTCCTGTAAAAGCCTATCTAA AACAAGGCTGACAACTACTCATCTTTTTTATAAACTAAAAACCACCAACACTGAGGCTCT CTTAGAACCGTCCTTTCATCAAGAGCATGAAACTTTCAGTTCTGCACGGGCTACCTTCTT TCTCCCAGCAGACTTTGAGATTTCAGTAACGCGAGCAGTTCCTATTAGGGAAATCGCCAC AACAAAGTTGCTTTAGTGATGTGAATTCCCAGAGGTAAAACTGATCAGAGCTACAAGACG CTTCAATTTAACAGCCGGCCAACTCTAAGTTCCCTTTCATTGTTTTACATCCTCCGTCCA CCTTTTGCGCATGTGCTTTGCTGCTGTACCCAATCCCACCCCCACCCCACTCCCCGGTAA TTCCTTGCGCACGCGCCCGTTCTACACTGTCCCCCGCCCCCATCCCCCGCCTCCCACTCC GGCCTAGGTAACTAACTCCTCGCGTGCTCTCTTTTGTCTGTAGTCCCCGCGCCGGCACTA ACCGGTATTCGAACTCCTCGTCGTCGTATTTGTCCGAGTAGTAGATTTGTTTGTGGGACA TGATTGCTCTGTCCGAGGGCGCTCAGCCCCGCGCCGCAGGCCTCCAGACAACTCCCAGCA GCACGCGCTCCCACCCTCTTTGGCCTCGCTTTCAAACACACCGCCCGCACTTCCTATTGG TCTCTGCGGCCGAAGGCGGGACAGCTCCATTTTGAAGTCCTCGATTGGCTTGCTTTGGCG TCTCTTCAAGTCGTAAATGGAGTGCTGTGCTCAGGTTTCTGAAGAATGAG
1	EXON 1	89,418,443	89,418,709	-	-	267	CTGGGTCAAACTAGGATTCTCATTGGCTCTCACTGCGCCCCTTGAGCCTGCTGGCGCAGC CATTGGCCAACTTTGGAAAGCAGACGGGTAAAGGAGGGACAGCGAGGTAGGGGGTCAGGG GTTAGTGAGGCCGGAAGTGAGTGTAATAAAGTTTGTCTGGGGAGGCCCAGACTGAGGTGA AAGTTGGGGCGGTGACTTAAGCAGACAGTTGCGTGATCCGGAACCAGATCGGCCCGCGGT GCGGTGCGGAGACTCCATGAGACCCTG
	INTRON 1 - 2	89,418,710	89,422,177			3,468	GTAAGTCTAGACTTTCTTTCTGTGG..........CTCAGGCCTCTTGCCCCTCCTCCAG
2	EXON 2	89,422,178	89,422,345	-	0	168	GACATGAACAAGCTGAGTGGAGGCGGCGGGCGCAGGACTCGGGTAGAAGGGGGCCAGCTG GGGGGCGAGGAGTGGACCAGACACGGGAGCTTTGTCAATAAGCCCACACGAGGCTGGCTG CATCCCAACGACAAAGTCATGGGACCTGGGGTTTCCTACTTGGTTCGG
	INTRON 2 - 3	89,422,346	89,422,925			580	GTGAGTGCATACCCCCCTCCCACTC..........CCATTCTTCCCTCCTTCCCCTACAG
3	EXON 3	89,422,926	89,422,996	0	2	71	TACATGGGCTGTGTGGAGGTCTTACAGTCAATGCGAGCCCTTGACTTCAATACCCGGACT CAGGTCACCAG
	INTRON 3 - 4	89,422,997	89,423,507			511	GTTAGTGGGAAGGCGGGTATATTGC..........GGTCTGAGTACTCCTGTTTCTCCAG
4	EXON 4	89,423,508	89,423,571	2	0	64	GGAGGCCATCAGTTTGGTGTGTGAAGCTGTGCCTGGTGCCAAAGGGGCAACAAGGAGGAG AAAG
	INTRON 4 - 5	89,423,572	89,423,696			125	GTATATGTGGTGGTTGGGGCTGGGT..........TCTGAGACTCTGGGCCCTTTCCTAG
5	EXON 5	89,423,697	89,423,816	0	0	120	CCTTGTAGCCGCCCACTCAGCTCCATCCTGGGGAGGAGTAACCTGAAGTTTGCTGGAATG CCAATCACTCTCACTGTGTCTACCAGCAGCCTTAACCTCATGGCAGCCGACTGCAAACAG
	INTRON 5 - 6	89,423,817	89,424,189			373	GTAGGTAGGGCTGCTGAAAGGGACC..........CCTTCTCCATCCCCACCCTCATCAG
6	EXON 6	89,424,190	89,424,243	0	0	54	ATCATTGCCAACCATCACATGCAATCTATCTCTTTCGCGTCCGGTGGGGATCCG
	INTRON 6 - 7	89,424,244	89,424,554			311	GTGAGTTGGGGACCAGAGGAAAGAC..........GGTCTCCTGAATCTACCCTCTCCAG
7	EXON 7	89,424,555	89,424,606	0	1	52	GACACAGCTGAGTATGTTGCCTATGTTGCCAAAGACCCTGTGAATCAGAGAG
	INTRON 7 - 8	89,424,607	89,424,765			159	GTGAGGCTTGCGGGCAGCACTGGGT..........ACTGGTGGTCTCCACTGTGTCCCAG
8	EXON 8	89,424,766	89,424,892	1	2	127	CCTGCCATATCCTGGAGTGTCCTGAAGGGCTTGCTCAGGATGTCATCAGCACCATCGGGC AGGCCTTTGAGTTGCGCTTCAAACAGTATCTCAGGAATCCGCCGAAGCTGGTCACCCCCC ATGACAG
	INTRON 8 - 9	89,424,893	89,426,514			1,622	GTGAGCTGGTGGGAGAGGGCGAGGC..........TCTTCTCTCATCCTTCTCTTTTCAG
9	EXON 9	89,426,515	89,426,701	2	0	187	GATGGCTGGCTTTGATGGCTCAGCTTGGGATGAGGAGGAAGAAGAGCCCCCTGACCATCA GTACTACAATGACTTTCCAGGGAAGGAACCCCCTCTTGGTGGGGTGGTAGATATGAGGCT TCGGGAAGGGGCTGCTCGACCTACTCTGCCTAGTGCCCAGATGTCCAGCCACTTGGGAGC TACACTG
	INTRON 9 - 10	89,426,702	89,426,787			86	GTAAGGAGCCAGGATGGAGATGCTT..........CTCACCCAATTTTCTTCTTCTGTAG
10	EXON 10	89,426,788	89,426,857	0	1	70	CCTATAGGGCAGCATGCTGCAGGAGACCATGAAGTCCGTAAACAGATGTTGCCTCCGCCG CCTTGCCCAG
	INTRON 10 - 11	89,426,858	89,426,938			81	GTGAGCACAGTTTGCTGATACGGAC..........GATGCTGTCTTTTTTTCCTTAACAG
11	EXON 11	89,426,939	89,427,070	1	1	132	GCAGAGAACTCTTCGATGACCCCTCCTATGTCAACATCCAGAATCTAGACAAGGCCCGGC AGGCTGGGGGTGGGGCTGGGCCCCCAAATCCTTCTCTTAATGGCAGTGCACCCCGAGACC TTTTTGACATGA
	INTRON 11 - 12	89,427,071	89,427,207			137	GTGAGTGAGTCTCTTGTAGCCCCAC..........CCCAGCTGTCTCTCTACACCCCTAG
12	EXON 12	89,427,208	89,427,446	1	0	239	AGCCCTTTGAAGATGCACTTCGGGTGCCACCCCCACCGCAGTCCATGTCCATGGCTGAGC AGCTGCAAGGGGAGCCCTGGTTCCACGGGAAGTTGAGCCGGAGGGAGGCCGAGGCGCTGC TGCAGCTCAATGGTGACTTCTTGGTGCGAGAGAGCACGACCACGCCTGGCCAGTATGTGC TCACTGGCCTGCAGAGTGGGCAGCCCAAGCACTTGCTGCTGGTGGACCCTGAAGGTGTG
	INTRON 12 - 13	89,427,447	89,428,316			870	GTAAGTGTGACAGAGGTGTGGCAGG..........CCAACCTTCTCTCCCTGCCTCCCAG
13	EXON 13	89,428,317	89,430,015	0	-	1,699	GTTCGGACAAAGGATCACCGCTTTGAGAGTGTCAGTCACCTGATCAGCTACCACATGGAC AATCACTTGCCCATCATCTCTGCGGGCAGCGAACTGTGCCTACAGCAACCCGTGGATCGG AAAGTGTGATCCTTCTCAGCTTCTCCAACAGGATGCTCTCCATTCCCGTCTCCCGTATTC TCTAACTTGTGGGACCTCTGTTTTGTGGGTCTGGCCTTGGGTGGGAACTGGGAGCAACGA GGACATGGGTTTAGTGCCCACTTGAGAGAGAGAAAAAGAGGGTTTCAGTAAGGAGCCTGG GGTAGCATCCTGCCTCTGCCCAAACTTCACCAAAGTATTAATGTGCAGAGTGGTCCCTTG TCTGGGCCTTGCCTGTGCCAACCTGATGCCCTTCCCCCCCAAAGGGTGGGTTCTTATAAT GGAAAATGCCCTGTGATGATAGGCCCAGTGGAGCAACTGCCCTTTGGGGGAAGGGAAATA ATTATACCTCTGGTTTACTCCTGGGTCTTCAGGGTACCCCAGATCCCGCGTAACATATCC CACTCCCTCTGCTTCCCCTTAAACTTTGTGCCTTTGACTATCATAGGTCTGCAGATACTT AATGCAGAGTTCTCAGGCCCTTCACGTGTGGACAGGGGTTACTGCCACCTTGGCTTCTGG AGCCCTGTCCTATTCAGCACCCCTTCCTGTGTCTAGGGAGAATAGGGACAGGAGTGGCCG CTATCTGCTCTGCCTTTCGGATGTGCAGCCCTTAAGAGATTGCCCCAAGCCAGAATATGG TGGCGCACGCCTTTAATCACAGCACTCAGGAGGCAGAGACAGGAGGAATTGTGAGGCCAT CCGATCTACAACAGAGTGAGTTCCAGGACAGCCAGGGCTATGGAGAGAGAACCTGTCTCC AAAAACCAAAAAGAGCGATTACCCCAGAGCCTTCTTCCTGATGGTAGCGGGGAGGGGCAG GACTGGACCCATCTTGCTCAGTGCCTCCTGACCTCAATGCCTTTCCTCCAAGGGGTCTGT ATACATTTCTCAAGCCTGCTCCTCCCATGTTTGCATGTGTGTTATAGTCTACAGCCAAAG TATAGCCCTCACTGTAACCCCATCCCGCCTCCCTCCTTTGGGATAGGTGTGTGCGTCTGA CTTGGGCCTCCAGGGTGTGTACAGTCAGTGTGGGTTTTGTGGAGGCAATAAGAATGAAGC AGTAGACAATCCCCAATACCATTTGCAGGTCTGGAACTGCACTCTCTTTTTTAAAAAACA TGTATACATTTTAGGGCTGTAGATTTATTTTCCTGGTTTTGTTTTTCATTGCTGACTTTT GAGCACAGAATTACGATAATCAATTACATTTATACATCACCTCGATGACTTTTCCAAACT TTTATTATTTTTTTTAAACAACTGTTGGGATTTTACTCCCTGGCCTTAACTAGGACAGGA TTGTACCCCACTCCTCCCCCCCCCCTTTTTCTTTTTCGCCAAGACAACTGAGCAGAAATT TGGCTGAGCAGTGTTGTGGGACTATGATGTGATAGTTTTAGATCCTACCTTCTGCTTTCG GGCAGCTGCAGCCAGCACAGAAACCTTACAAGCTCACTCTGTGTGTAGGCTTTCTGGACA AGGAATGGTCGCCAAATTTTTGGTTTGGATGTCTTATACCAAAGGGAAATAGTCTTCATT AAAGTTCGTATTTCTTTTA
	3' upstream sequence						CCTCGGCCTCTCAACACCTCTGGAAAGTCTGATTGATGGGGGCTGTCTGTGGGAGGTGGT GACGGACCCCATCTGGGCTAGGTCCAGTGGGCTCCAAGCCAGCGCCAGCCCGCAGGCACC AGTTTGCAGAGATTTGGGGAGCTGCGAGGCTGTGCGGTAGGGACGCATCTGCAAGGCCAC TGGCTCGCGGCGGGAAGGGGCGTGTCCGGACCGCCCCCAGGCCCACCCGCAGGTCGCACG GCCCCTGTCGAGTGGTGCGTTCCACTCTGCTACCGGGCTAGCTGGGCGGCGACAGGCGCA CTTCGGAGGAGTGGCGTGGCGAGGCCCAGCCTTCCTGGGTGCGGCGTCTGGGCCCTTCCC TGCTTTCCCTCCCCACCGCGTTCCGTGGTGGTGACCCATTGGAGTTCCGGTTCCGGTTGC TGTGGCTGCGGGCGGGCGGTGAGTCTGGAGCAGGCGCGCAGTTGGTGCAACGGCTCTGTG CTTTCCCCCTCGGCGTGGCTAGGGCTTGCTGCTGCTCCGGGGGGCTGCGCTGCCCCTGAC TCCCCTCCGGGCGATGGTGCGGCCCGAGGACGCCTCCATCCCCCGCCGACGCTGACTCGG GTCCCCAATCCATGGCCGCCTCGGCGCCGCCCCCACCGGACAAGCTGGAGGGAGGCAGCG GCCCCGCACCGCCCCCCGCGCCGCCCAGCACCGGGAGGAAGCAGGGCAAGGCCGGTGAGA GCGCAGAGAAGGGCAGGGGCTGTTGAAGCCCGGGACCCTGGAACCTCGGATGGAACGGTT GGGGGATGGGGGAGGTTGCCTAGGAGCCTGGAGGTAGCCTCAGGTGAGAAGGGTCAGTGG TTGGAGACAGGTGTCACAGAACACTTCAGGTTTTGGATGACACTGAATTGAGACAAACCT GGTAGTTTCAAGAGATTGGGTTATCTTTGATTTGCAGGAAGACGTAGCTGAGAGTATAGT CATACTAGCCATTTTTCATATCTCACCCCTGTTTCTTAAA..........

Sequence Detail Report

Gene Symbol (Gene ID)	Shc1 (ENSMUSG00000042626)
Transcript ID	ENSMUST00000039110

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 470 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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