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Target CDS Information

Gene Symbol (Gene ID) Aff3 (ENSMUSG00000037138)
Cross Reference
EMBL AC117789, AC122026, AC132381, ...show all
GO GO:0003690, GO:0003700, GO:0005634, ...show all
goslim_goa GO:0001071, GO:0003674, GO:0003677, ...show all
MGI_trans_name Aff3-201
RefSeq_mRNA_predicted XM_006495737.2, XM_011238444.1
RefSeq_peptide_predicted XP_006495800.1, XP_011236746.1
UCSC uc007ast.2
UniParc UPI0001661E2F
Uniprot/SPTREMBL F8WJA7
Definition protein_id:ENSMUSP00000044128
translation:
MDSFDLALLQEWDLESLCVYEPDRNALRRKERERRSQETQQDSGSFNSGYSLFSEPYKTN
KGDELSNRIQNTLGNYDEMKDFLTDRSNQSHLVGVPKPGVPQTPVNKIDEHFGAESRAQP
QPSTVCSTASSTPAAVPVQQGKRGAMGWQKAGHPPSDGQQRAAQQGSLRTLLGDGVGRQQ
TRAKQVCNMETGLQTQERPPAMAAKHGGSGHCVQNFPPSLASKPSLVQQKPTAYVRPMDG
QDQAPDESPKLKSSTETAVHCTAYRGVPANKPESARAKAKLAKFSIPKQAEESRSGENNS
CVEEIIREMTWLPPLSAIQAPAKVEPSKFPFPNKDSQLVSSGHSNPKKADAEPGSPDNGA
SNTSTLEDDLKLSSDDEEGEQAAQRTALRALADSSVVQQTNCRGSAPSSKGGGSSSSSGG
SSSSSDSESTSGSDSETESSSSSSESEGSKPPHCSSPEAEPASSNKWQLDKWLNKVNPHK
PPILIQNESHGPERNQYYTPPVKDEGQDCGKLPEICQASLRDKELKTTCKEEQRPRTANK
APGSKSVKQKSPPAAVAVTAAALPPAVPSAPTESAPAPTRRSAGKKPTRRTERTSAGDGA
NCHRPEEPVAPDTLGASVVGPLEPPKTRPCGNNRTGHRKELRSSVTCEKRRTRGLSRIVP
KSKEFIETESSSSSSSSDSDLESEQEEYVLSKAPTTTGSEQRLKEAASSNNNSNSNSSTS
RASVGSINARTTSDIAKELEEQFYTLVPFGRNELLSPLKDSDEVRSLWVKIDLTLLSRIP
EHLSQEPGVLSAPSAKDTDSAPASHALDAPAEKTLPKSKRKRKCDNEDDYREIKKVQGRK
ESASRLAASTNNTLSGNHCNVNVNSLAIPINKNEKMLRSPTSPLSDTCKHKYASEDLTSS
SRPHGNGLLTSASSNKEPKAESQLQTIAGDLTKASHNSSENGTLHSKSRPQTEPWSPGSN
GHRDCKRQKLIFDDMPRSADYFMREAKRMKHKADAMVEKFGKALNYAEAALSFIECGNAM
EQGPMESKSPYTMYSETVELIRYAMRLKTHSGPNATPEDKQLAALCYRCLALLYWRMFRL
KRDHAVKYSKALIDYFKNSSKAAQAPSPWGSSGKSTGSPSPMSPNPSPASSVGSQGSLSS
SSGLSPSTIVSIPQRIHQMAANHVSITNSILHSYDYWEMADNLAKENREFFNDLDLLMGP
VTLHSSMEHLVQYSQQGLHWLRSSVHLS

Chromosome 1
Length
Position(start - end)
447,691
38,179,449 - 38,627,141
Orient to Chromosome minus
Link Location : (1:38179449-38627141)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Aff3 (ENSMUSG00000037138)
Transcript ID ENSMUST00000039827
Reports
substitution
cSNPs28
Insertion320
Deletion360
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num18
non-synonymous num10
synonymous substitutions 38181345 (p.Ala1160Ala), 38181393 (p.Leu1144Leu), 38186941 (p.Ala1064Ala), 38191206 (p.Pro1030Pro), 38193572 (p.Asp994Asp), 38203873 (p.Pro954Pro), 38207920 (p.Asn860Asn), 38207974 (p.Ser842Ser), 38209655 (p.Val789Val), 38209871 (p.Ser717Ser), 38209928 (p.Gly698Gly), 38209937 (p.Thr695Thr), 38210252 (p.Arg590Arg), 38210279 (p.Arg581Arg), 38218281 (p.Pro452Pro), 38218308 (p.Ser443Ser), 38535442 (p.Gly152Gly), 38535568 (p.Glu110Glu),
non-synonymous substitutions 38209875 (p.Asn716Ser), 38209884 (p.Ser713Asn), 38209887 (p.Asn712Ser), 38209890 (p.Asn711Ser), 38209893 (p.Asn710Ser), 38218309 (p.Ser443Tyr), 38218310 (p.Ser443Ala), 38535157 (p.Gly208Ser), 38535208 (p.Thr191Ala), 38535528 (p.Thr124Ser),
B6 transcript
(ENSMUST00000039827)
MDSFDLALLQEWDLESLCVYEPDRNALRRKERERRSQETQQDSGSFNSGYSLFSEPYKTN
KGDELSNRIQNTLGNYDEMKDFLTDRSNQSHLVGVPKPGVPQTPVNKIDEHFGAESRAQP
QPSTVCSTASSTPAAVPVQQGKRGAMGWQKAGHPPSDGQQRAAQQGSLRTLLGDGVGRQQ
TRAKQVCNMETGLQTQERPPAMAAKHGGSGHCVQNFPPSLASKPSLVQQKPTAYVRPMDG
QDQAPDESPKLKSSTETAVHCTAYRGVPANKPESARAKAKLAKFSIPKQAEESRSGENNS
CVEEIIREMTWLPPLSAIQAPAKVEPSKFPFPNKDSQLVSSGHSNPKKADAEPGSPDNGA
SNTSTLEDDLKLSSDDEEGEQAAQRTALRALADSSVVQQTNCRGSAPSSKGGGSSSSSGG
SSSSSDSESTSGSDSETESSSSSSESEGSKPPHCSSPEAEPASSNKWQLDKWLNKVNPHK
PPILIQNESHGPERNQYYTPPVKDEGQDCGKLPEICQASLRDKELKTTCKEEQRPRTANK
APGSKSVKQKSPPAAVAVTAAALPPAVPSAPTESAPAPTRRSAGKKPTRRTERTSAGDGA
NCHRPEEPVAPDTLGASVVGPLEPPKTRPCGNNRTGHRKELRSSVTCEKRRTRGLSRIVP
KSKEFIETESSSSSSSSDSDLESEQEEYVLSKAPTTTGSEQRLKEAASSNNNSNSNSSTS
RASVGSINARTTSDIAKELEEQFYTLVPFGRNELLSPLKDSDEVRSLWVKIDLTLLSRIP
EHLSQEPGVLSAPSAKDTDSAPASHALDAPAEKTLPKSKRKRKCDNEDDYREIKKVQGRK
ESASRLAASTNNTLSGNHCNVNVNSLAIPINKNEKMLRSPTSPLSDTCKHKYASEDLTSS
SRPHGNGLLTSASSNKEPKAESQLQTIAGDLTKASHNSSENGTLHSKSRPQTEPWSPGSN
GHRDCKRQKLIFDDMPRSADYFMREAKRMKHKADAMVEKFGKALNYAEAALSFIECGNAM
EQGPMESKSPYTMYSETVELIRYAMRLKTHSGPNATPEDKQLAALCYRCLALLYWRMFRL
KRDHAVKYSKALIDYFKNSSKAAQAPSPWGSSGKSTGSPSPMSPNPSPASSVGSQGSLSS
SSGLSPSTIVSIPQRIHQMAANHVSITNSILHSYDYWEMADNLAKENREFFNDLDLLMGP
VTLHSSMEHLVQYSQQGLHWLRSSVHLS*
MSMv4 transcript
MDSFDLALLQEWDLESLCVYEPDRNALRRKERERRSQETQQDSGSFNSGYSLFSEPYKTN
KGDELSNRIQNTLGNYDEMKDFLTDRSNQSHLVGVPKPGVPQTPVNKIDEHFGAESRAQP
QPSSVCSTASSTPAAVPVQQGKRGAMGWQKAGHPPSDGQQRAAQQGSLRTLLGDGVGRQQ
TRAKQVCNMEAGLQTQERPPAMAAKHGSSGHCVQNFPPSLASKPSLVQQKPTAYVRPMDG
QDQAPDESPKLKSSTETAVHCTAYRGVPANKPESARAKAKLAKFSIPKQAEESRSGENNS
CVEEIIREMTWLPPLSAIQAPAKVEPSKFPFPNKDSQLVSSGHSNPKKADAEPGSPDNGA
SNTSTLEDDLKLSSDDEEGEQAAQRTALRALADSSVVQQTNCRGSAPSSKGGGSSSSSGG
SSSSSDSESTSGSDSETESSSSESESEGSKPPHCSSPEAEPASSNKWQLDKWLNKVNPHK
PPILIQNESHGPERNQYYTPPVKDEGQDCGKLPEICQASLRDKELKTTCKEEQRPRTANK
APGSKSVKQKSPPAAVAVTAAALPPAVPSAPTESAPAPTRRSAGKKPTRRTERTSAGDGA
NCHRPEEPVAPDTLGASVVGPLEPPKTRPCGNNRTGHRKELRSSVTCEKRRTRGLSRIVP
KSKEFIETESSSSSSSSDSDLESEQEEYVLSKAPTTTGSEQRLKEAASSSSSNNSSSSTS
RASVGSINARTTSDIAKELEEQFYTLVPFGRNELLSPLKDSDEVRSLWVKIDLTLLSRIP
EHLSQEPGVLSAPSAKDTDSAPASHALDAPAEKTLPKSKRKRKCDNEDDYREIKKVQGRK
ESASRLAASTNNTLSGNHCNVNVNSLAIPINKNEKMLRSPTSPLSDTCKHKYASEDLTSS
SRPHGNGLLTSASSNKEPKAESQLQTIAGDLTKASHNSSENGTLHSKSRPQTEPWSPGSN
GHRDCKRQKLIFDDMPRSADYFMREAKRMKHKADAMVEKFGKALNYAEAALSFIECGNAM
EQGPMESKSPYTMYSETVELIRYAMRLKTHSGPNATPEDKQLAALCYRCLALLYWRMFRL
KRDHAVKYSKALIDYFKNSSKAAQAPSPWGSSGKSTGSPSPMSPNPSPASSVGSQGSLSS
SSGLSPSTIVSIPQRIHQMAANHVSITNSILHSYDYWEMADNLAKENREFFNDLDLLMGP
VTLHSSMEHLVQYSQQGLHWLRSSVHLS*
homology99.27 (1229 / 1229)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Aff3 (ENSMUSG00000037138)
Transcript ID ENSMUST00000039827
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TAATCCAAGCAAGAGGGAGGTGAAGATGGAAAACTTTGGAGCAACCTGGC
TAGCTAGACTAACCTAAGCCCCAGCTCAACCAGAGACCTTGCTTCAGTGTGGAAAGTAGA
GAGAACACTTGAGGAAGACAGCTGACATTAGCCTCTGACGTCAGCCTCTGATCTCCACAT
GTGTGATGGTTTGACTATGCTTGGCCTAGCAAGAGGCACTATTAGGTGGTGTGGCCTTGC
TGTAGTAGGTGTGGGTGTGGCCTTGTGGGAATGGGTCTGGCTTTGATGGAGTGAGTGTGG
CCTTGTTGGAGGAAGTGCCACTGTGGGGGGTGGGCTTTGAGACCCTCCTCTCCTAGCTGC
CAGAAAGACAGTTTGCTCTTGGCTTTCTTTGGATGAAGATATAGAACTCTCAGCAGTTCC
TGCACCCTGCCTGCCTGGATGCTGCCAACCTTCCTGCCATGATGATAATGGACTGAACCT
CTGAATTGTAAGCCAGCCCCAATTAAATGTTGTCCTTATAAGAGTTACCTTGGTCATTGT
GTCTGTTGACAGAAATGTATGTGCCTGACCTCCACGTAAATGCACAGGCACCTATATATA
CACATGCATGTACACACACAAACACACACACACACACACACACACACACATACAGAGGAG
GAAAAAAAGGATGCTAAATAGCCTACTAAGATCAGTACCTGGTAAGAGTATAAGGGATTC
TAGAATGTTCCAGGATATTTTTTCAACATTCCTTTTAGGGTTAGGTGGGAGTGAAAAAGA
CCTTTGCCCCTGGCCACCATGACTGTGTATCTCAATCTATGTTCTTGTCAGGAGATCTCT
CAAGCTGTGTGTCCAGGCTCTGTTACCAGTCTGCCCTGGGGCGGGTAGGAGCAGGGGGCT
GGGTGTCTGCCGTAGTCCGTCGCCTCCACACTTTCACATCCTCTATCAACACCTGCACAC
TTGGGTGGTGACCACACAAGCTCTTCCTGTTTGTGCAGAAAGTGCCATTC
1 EXON 1 38,664,858 38,664,955 - - 98
AGAACGCTTGCCAGCGAGGAGGAATCCGTACACAGAAGAGAGAAGCCGAACAATTTATTT
GGAACAGGAAAAAAATAAAACCAAGAGTGTGTTGAGAG
INTRON 1 - 2 38,627,245 38,664,857 37,613
GTAAGTGGGTCTGTGTCTCGGTACT..........CCTTAGCGGGCGCCTCTCGTTGCAG
2 EXON 2 38,627,089 38,627,244 - 2 156
CGCGCGGGCGGCCCGAGGCTCGGCAGCGGCGGCGGCGGACACGGCGGCGGCGGACACAGC
GGCGGCGGCGGACACGGCGGCGGCGGCGCTGACACCTCCCACCATGGACAGCTTCGACTT
AGCCCTGCTCCAGGAATGGGACCTCGAGTCGCTGTG
INTRON 2 - 3 38,536,947 38,627,088 90,142
GTGAGTCCCGGTGCTGGCCGCTGGG..........TTCTCTTTCCTTTCTCCTGGTGCAG
3 EXON 3 38,536,826 38,536,946 2 0 121
TGTCTATGAACCGGACAGGAATGCGTTACGGAGGAAAGAGCGAGAAAGAAGAAGTCAAGA
AACACAGCAGGACAGTGGCAGCTTTAACTCCGGTTACTCGCTCTTCAGCGAACCCTACAA
G
INTRON 3 - 4 38,535,724 38,536,825 1,102
GTAGATGGTTTTCAGCTGTTCACCT..........TCCTTGGATATTTTTCTTTCTCCAG
4 EXON 4 38,535,411 38,535,723 0 1 313
ACGAACAAGGGGGATGAACTCTCCAACCGGATCCAGAATACATTAGGAAATTATGATGAG
ATGAAAGACTTTTTAACTGATAGATCCAACCAGAGTCATCTTGTTGGCGTCCCCAAGCCA
GGTGTCCCTCAGACTCCCGTGAACAAGATAGATGAACATTTTGGGGCAGAGTCGAGAGCC
CAGCCCCAGCCCTCATCCGTCTGCAGCACTGCGTCCTCTACACCTGCAGCTGTCCCTGTG
CAGCAGGGCAAGAGAGGTGCCATGGGCTGGCAGAAGGCTGGTCACCCACCGTCCGATGGC
CAACAGAGAGCAG
INTRON 4 - 5 38,535,292 38,535,410 119
GTAAGGAGGGGCATGAGGCAGTTGC..........TCACTGCCTTCTTCTTCCAACTCAG
5 EXON 5 38,534,906 38,535,291 1 0 386
CGCAACAGGGCTCTCTCAGGACCTTGCTTGGAGATGGTGTTGGCAGACAGCAGACAAGGG
CCAAGCAAGTGTGCAATATGGAGGCGGGGCTTCAGACCCAGGAGAGGCCACCTGCAATGG
CAGCCAAGCACGGCAGCAGTGGACACTGTGTTCAGAACTTTCCCCCATCCCTGGCTTCAA
AACCCAGCCTGGTGCAGCAGAAACCAACTGCCTACGTGCGGCCAATGGATGGCCAGGACC
AAGCTCCTGACGAATCTCCTAAGCTGAAGTCATCCACAGAAACTGCTGTGCACTGCACAG
CCTACAGAGGGGTCCCGGCCAACAAACCAGAGTCAGCCCGAGCCAAGGCCAAGCTTGCCA
AGTTCAGCATCCCCAAGCAGGCAGAG
INTRON 5 - 6 38,406,544 38,534,905 128,362
GTGAGTTCATTGTCATTGCCTGACT..........TGATTTATCTCTCCTTTGCTTTCAG
6 EXON 6 38,406,496 38,406,543 0 0 48
GAGAGTAGATCTGGAGAAAACAACAGCTGTGTGGAAGAAATAATTCGG
INTRON 6 - 7 38,341,802 38,406,495 64,694
GTAAGGACGCTCTTTAAAATCTTCT..........ACACTGTTTTTAATCTCACCTCTAG
7 EXON 7 38,341,721 38,341,801 0 0 81
GAGATGACCTGGCTTCCTCCACTTTCTGCTATTCAAGCTCCTGCCAAAGTGGAACCAAGC
AAGTTCCCATTCCCAAATAAG
INTRON 7 - 8 38,329,909 38,341,720 11,812
GTGAGCGTGTGCAGCACTAGAGAGG..........TCATTGATATTTCTTGTCTTTTCAG
8 EXON 8 38,329,872 38,329,908 0 1 37
GACTCGCAACTTGTATCCTCTGGACACAGTAATCCAA
INTRON 8 - 9 38,320,164 38,329,871 9,708
GTAAGAATGCCTCTGTCCTTTTCTG..........TTTGTTTTTTTTTTGTTTTTTTAAG
9 EXON 9 38,320,112 38,320,163 1 2 52
AGAAAGCTGATGCGGAGCCAGGGAGTCCAGACAATGGCGCATCGAACACTTC
INTRON 9 - 10 38,269,762 38,320,111 50,350
GTAAGTGTCTTTCCAGTTCCTCTCT..........GTCCGAATCTCTTTGTCCCTTTCAG
10 EXON 10 38,269,710 38,269,761 2 0 52
AACTCTGGAAGACGACCTTAAGCTAAGCAGTGATGACGAAGAGGGTGAGCAG
INTRON 10 - 11 38,252,679 38,269,709 17,031
GTAAGACTTTCTCATGTGTAGATGA..........ACATCTCTCCCTTTTCTTCCAGCAG
11 EXON 11 38,252,641 38,252,678 0 2 38
GCAGCCCAGAGAACAGCTCTCCGCGCTCTAGCTGACAG
INTRON 11 - 12 38,218,456 38,252,640 34,185
GTACATTTTGTCATTTTTATGAACT..........CTTGGGGGGCCTGGTGGACTGGCAG
12 EXON 12 38,218,263 38,218,455 2 0 193
CTCCGTGGTTCAGCAGACCAACTGTAGAGGTTCGGCGCCATCCAGCAAGGGCGGCGGCAG
CAGCAGCAGCAGCGGCGGCAGCAGCTCCTCCAGCGACTCAGAGAGCACTTCCGGCTCCGA
CTCCGAGACGGAGAGCAGCTCCAGCGAGAGCGAGAGCGAGGGCAGCAAGCCTCCACACTG
CTCCAGCCCCGAG
INTRON 12 - 13 38,210,648 38,218,262 7,615
GTAGGCAGCGGCTGCAGACTCGAGG..........TTTGTCCCGGGTTTTCTGTTTTCAG
13 EXON 13 38,209,553 38,210,647 0 0 1,095
GCCGAACCTGCGTCCTCTAACAAGTGGCAGCTGGATAAATGGCTAAACAAAGTTAATCCT
CACAAGCCGCCAATTCTGATCCAAAATGAAAGCCACGGCCCGGAAAGGAATCAATACTAC
ACGCCGCCGGTGAAAGATGAAGGGCAAGACTGCGGGAAACTTCCTGAGATCTGCCAAGCC
AGCCTGAGGGACAAGGAGCTCAAGACCACCTGCAAGGAGGAGCAGAGGCCGAGGACCGCA
AACAAGGCCCCTGGCAGCAAAAGTGTAAAGCAGAAGTCCCCACCCGCTGCTGTGGCTGTG
ACCGCAGCTGCCCTCCCGCCCGCGGTGCCCAGCGCACCCACGGAGAGCGCGCCTGCGCCC
ACCCGCAGATCAGCAGGCAAGAAGCCCACCCGGCGAACCGAGAGGACCTCAGCCGGGGAC
GGTGCCAACTGCCACCGGCCTGAGGAGCCAGTGGCCCCAGACACGCTGGGGGCGAGCGTG
GTGGGACCCCTAGAGCCCCCCAAAACCAGACCCTGCGGTAACAACAGGACAGGCCACCGC
AAGGAGCTGCGCTCCTCCGTGACCTGTGAGAAGCGGCGCACGAGGGGGCTGAGCAGAATC
GTCCCCAAATCCAAGGAGTTTATTGAAACAGAATCTTCGTCTTCCTCTTCCTCCTCGGAC
TCAGACCTGGAGTCAGAGCAAGAGGAGTACGTCCTGTCCAAGGCTCCGACAACCACTGGA
AGCGAGCAGCGGCTGAAGGAGGCCGCCAGCAGCAGCAGCAGCAACAACAGCAGCAGTAGC
ACCTCCCGGGCTTCTGTGGGCTCCATCAACGCCAGGACCACCAGTGACATTGCCAAGGAG
CTAGAGGAACAGTTCTACACGCTGGTCCCCTTTGGCAGGAATGAACTACTATCTCCGCTA
AAGGACAGCGATGAGGTCAGGTCTCTCTGGGTCAAAATTGACCTGACCCTCCTGTCCAGG
ATCCCAGAACACCTGTCCCAGGAGCCTGGGGTCTTGAGTGCTCCTTCGGCCAAGGACACT
GATAGTGCCCCAGCCAGTCATGCATTAGACGCTCCTGCTGAAAAGACTTTGCCAAAATCC
AAGAGGAAACGCAAG
INTRON 13 - 14 38,208,031 38,209,552 1,522
GTAGGCCTAGAGTTGGGAGGAGCAG..........ATGGCTTCTGCTTATTATCATCCAG
14 EXON 14 38,207,906 38,208,030 0 2 125
TGCGACAACGAAGATGACTACAGGGAGATAAAGAAGGTCCAGGGAAGGAAGGAGAGCGCC
TCACGCCTCGCCGCCTCCACTAATAACACCTTGTCCGGCAATCACTGCAACGTGAACGTC
AACAG
INTRON 14 - 15 38,205,092 38,207,905 2,814
GTAAGCCTGTTCCCAGGAGGGTAGG..........GCTCCGTTGCTGTTTCTCTTTTCAG
15 EXON 15 38,204,890 38,205,091 2 0 202
CTTGGCAATACCAATAAACAAAAATGAAAAGATGCTCCGGTCGCCCACTTCGCCACTCTC
AGACACATGTAAACACAAATACGCCAGCGAGGACCTGACTTCTTCCAGCCGACCTCACGG
CAACGGGTTGTTGACTTCAGCGTCTTCCAACAAAGAGCCAAAGGCTGAGAGTCAGCTGCA
GACGATTGCTGGGGACCTCACG
INTRON 15 - 16 38,203,939 38,204,889 951
GTTTGTCAAGGCCCTTTCTTTCTAA..........GGCTTCTGTCTCATTTTTTATTTAG
16 EXON 16 38,203,811 38,203,938 0 2 128
AAGGCATCTCACAACAGTTCTGAAAATGGCACCCTCCATAGCAAGTCACGGCCCCAGACG
GAGCCGTGGTCTCCAGGTTCCAATGGCCACAGGGACTGCAAGAGACAGAAACTGATCTTC
GATGACAT
INTRON 16 - 17 38,193,630 38,203,810 10,181
GTAAGTTTTAATATGGTGAGGGGGA..........GGCATCTGATGTTCTCCTCTTACAG
17 EXON 17 38,193,566 38,193,629 2 0 64
GCCTCGAAGTGCAGATTATTTTATGCGAGAAGCCAAGCGGATGAAACATAAAGCAGATGC
CATG
INTRON 17 - 18 38,191,308 38,193,565 2,258
GTAAGACCCTTTCTTTCTAGACTTG..........ACACATCACCAATTCTGTTTGTCAG
18 EXON 18 38,191,171 38,191,307 0 2 137
GTGGAGAAGTTCGGGAAGGCCCTGAACTATGCCGAAGCTGCCTTGTCCTTCATCGAGTGC
GGAAACGCAATGGAACAAGGGCCAATGGAATCCAAGTCTCCGTACACCATGTACTCGGAG
ACAGTGGAGCTCATCAG
INTRON 18 - 19 38,187,008 38,191,170 4,163
GTAGGCAAGCCCCGCTTCCAGCAAG..........CTTTTTTATCTTTTTTTTTTTTAAG
19 EXON 19 38,186,936 38,187,007 2 2 72
GTATGCTATGAGACTAAAAACCCACTCAGGCCCCAATGCCACACCAGAGGACAAACAGTT
AGCTGCACTTTG
INTRON 19 - 20 38,185,419 38,186,935 1,517
GTAAGTATAACCCCAGCTCTGCAAA..........ACACGTTTCTCTTCTTCCCCTGCAG
20 EXON 20 38,185,325 38,185,418 2 0 94
TTACCGATGCCTGGCTCTCCTATACTGGCGGATGTTTCGACTCAAAAGAGACCATGCTGT
AAAATATTCAAAAGCACTTATCGACTATTTCAAG
INTRON 20 - 21 38,181,665 38,185,324 3,660
GTACTGCCTAGCAAATAAGCACCAT..........TGTACAAATTTTCATTTCCCTGCAG
21 EXON 21 38,181,615 38,181,664 0 2 50
AATTCATCGAAAGCTGCCCAAGCCCCATCCCCATGGGGGTCCAGTGGCAA
INTRON 21 - 22 38,181,484 38,181,614 131
GTAAGTTCACGTTCCCCAAATGCAG..........GGATTTTCTACCTCTCTTCTTCCAG
22 EXON 22 38,181,260 38,181,483 2 1 224
GAGCACTGGAAGCCCATCCCCCATGTCTCCCAACCCTTCTCCCGCCAGCTCCGTGGGGTC
TCAGGGCAGCCTCTCCAGCTCCAGCGGCCTATCCCCATCGACCATCGTCAGCATCCCCCA
GCGCATTCACCAGATGGCAGCCAATCACGTCAGCATCACCAACAGCATCCTCCACAGCTA
TGACTACTGGGAGATGGCTGATAACCTGGCCAAGGAAAACAGAG
INTRON 22 - 23 38,179,571 38,181,259 1,689
GTGTGTGCACAAGCCCTGGAGAATG..........CCTCAAACATCTCTCTGTCTCCTAG
23 EXON 23 38,177,327 38,179,570 1 - 2,244
AGTTCTTCAATGACCTGGATTTGCTCATGGGACCTGTCACCCTGCACAGCAGCATGGAAC
ACCTGGTCCAGTACTCCCAGCAAGGCCTGCATTGGCTTCGGAGCAGCGTACACCTGTCCT
AGGGACCACGCCTTTGAGCCAGACTGTGTTTTCTTCTCTTCAGTGGCTCAATGTTTCCGG
ACACTGTGCTACTGACATTCCCAGCCCAAACCACAGTGAACATCTCAGAGTCTAACAACG
ATGTTTCTCTGGGGTGTGTGTGTTTAGATGTGGGTTCGTACAAAGCTGCCTGTGTATGTG
TGTAAGATCAACAGCTCATCAAAATGTATTCCCTTTGTCTAGTTTCTATGATCCCAGGCT
AGACAGTGATTAGAGGTTCCTCATTGGAGAAAACCCATGCAGTACACACGTGCTCACACA
CTCAGACACATCCTCCCCGCCAGTGCTAAGCCATTGCCTTCTTGGAAAGTCCCACCGAGA
TCACATGCATTGCTGCACCTGGTGCACTCCTGCACCTGGAGAGCGTAACTGCCGGACGAG
TTGAACCTTTCTCTTATTATTGGTTCCTTTCAGTATTATATACAATTCCCCGATTACTTT
TGGTTGTTGTATATTAATGAGCAATTGATGAAACAAGCCAGTTACTTTTTGTGCCAGAAG
TTCACTAGAGTGCATGTTTCCAAACGCCTTTCCCCTCCCCTACTACCCTCCCCGACCCCT
CATTATCTACCAAACACATAAGCCAGTGGGATCCCACAAGCGTCCCTTGCCTTGTCCCCA
CATATGGCACCAGGATTCGGTAAAAGCTCAGCAACCCCACTAGCAACGGTGGCTGTTCCA
GTTCGGAATGAAAGTCTTCACCGGGTGGCAATGAGTCCTGCAGGCATAGACAGTCCCTCT
TTCTGCCACTGTGACTCTGTGGCTGTGGCCAGCCAACCCATTTCAAGTCTCTTCTTTCTA
CAGTAGCTTTCTTGCAACCGTCCTCAGCCAAACGACGACAGTGTCCAGAGTGTGCCGTCC
CTAGATCTGGCAGTTGCTTTGCAGACTCAGACACACTCACTGTTGTCACCGGCCTGATTC
TTGCTCGTCACACACCATGTGCGACTCCAGGCCTTGAGTGACATTTTGACTTGGGGGACA
TTTCTTTTTCAAGCTTTCATTAACAAGCTGCTTACAATGCAGGGAAAGTTATCCCTGCGA
TGATCAAAACTCGGTTTGGAGTAGCAACAACCAGAGTATCTTGCTTTTAATCTTCGCATT
TGGTGTGTTTTTGTCTTGACCATGGGTCTTGTCTGGTTTGTTTTGGTTTTGGTTTTGGTT
TATTTGTTTTTTTTTAATTGAGTTTGTTTTAGTTTTTCAGCATCTCATTTACGGTTTTTG
TCAGAAGTTTGTTTTCTCATGTTTTTTTCATCCCCAAACTTAGTCTTCTTATTAAATATG
TGTAGATCTGAAATATTAGTATAAAGTCCTGTAAACAAGGTACATCTTACAACACTTTAA
GAACAAACCATTGTCCTTGAGTTACTTGACAGAACTAGAGCAGATCAGCCAGAGGGAGAT
CAGCAAGGCCATCTGCAGACCCCTCCATTGTTCAAGGTGGCTGAGGTGTCACAAAGTGTG
TCTCCTTTGTCTCCCTGTGAGCCTGACTACATACACATACACATCACCGTCTGTCAGCTT
TGTCAGTAGGTGGCAAATAAGAATGCTCTCATTCCCCAGCTCCAGGAGTGGATGCAAAAC
TAGGCAAACAGTTGAGCACGGTTTGGTGATTTGCACCAAAGTGGATTGTAGAATTTGCAT
CTATCTGGCTTTCACCCTCAAACACTTGAAATTTTTAGCAGTCCATTGACTTCAATTGTT
TGGGACCAGAACTGTTTTTATAAGACGTTAGAATATTTGTGAATACATAATGAGGTATCT
TGGGGGAGAGGATTCAAGTCTAAACATAAATCTCATTTATGTTTTATAGAGACCCTGTAC
ACAGGAAAATAATGTCTGCAATATTGATTGTAAGCCATCCCGAGAGGTCAGGCATGGGAT
TTACCACTGGTATCATAGCACTGTACAAGAGGTTTTAGATTCTGGAGCAGATTAGCTTTG
AGATTCTTGAAGTGAGAAGGTTTTACCTCTGTTTCCATCTTTGTATTTATCTATACACCA
TGCTCCTTGCATCCCTTTCTCTGACTGTCGGCAGGTCTGTGATCCCATCCTGTGTTTAAA
GTCTGAATATACGAAATTGAATCA
3' upstream sequence
CCTTGTGTGCAGCACTGCGACTTTGTTCTAGTTACCCTTGGTGAATTCTGGCAAAGAGTT
CCAACTCTTGTATAGAGCCGTATCCTCAAGGGTCTCTGTGCAACCTTGGGGAGTGTCTCT
GATCCTGCCTCACTTTAAAGTTACAAGCTCGGTTGTGACACTCACGCAATCCACATGCCT
GGGAAACCGATTAAATTGCAAAGGTGACTTCTGGCTGATTGTACCAGCACAGGTTTGACC
AACACACTGATGACCAAACAAAACTTGTAGAGACTGGTCTGGGGTGGGGCTGGGGGGCTA
GGGGGTGTGGCACATAGGAGGGTGGCGTCACATAGTCAGAGCATGCAGGTCCTAGTCAAG
TTTCTTGCCCCATCCATGGAGCAGTGACAGGCCCAGTGTAGATAATTTTATTAAGAAACC
GTCTCGCATCTGATGGGGCTCAATGTTGGTCAGTCTGGTAAGGGGCCATCTTCCACTTGA
TGCCGTGCAAGTCCATCCACAACATGTTCCTTGTCTGAAGTTGGATTGCAAATAGAAACG
TCTTTCTTATGTGTTTTCTAAAGATCTATTTATTTATTTTATGTATGAGCACACTGTAGC
TGTACAGATGGTTGTGAGCCTTCATGTGCTTGTTGGGAATTGAATTTAGGACCTCTGCTT
GCTCTGGTCTGCCTCACTCCCTCCAGAAGATCATTACAAGTAGTTGTGAACCACCATGTG
GTTGCTGGGATGTGAACTCAGGATCTTCGTAAGAGCAGTCAGTGCTCTTACCTGCTGAGC
CATCTTGCCAGCCCCTTTCTTATGTTTTCTGACTATAAAAATCCTACATGTTCATTATAG
GGATTCAAATAATGCTGAAATGTAGAAGATGCAAGCCTGTGGTTGCCTCACTCCCGAGAT
GACCGTGGCTCAGTGATGCTGTGTCTTTCCAGAGAGTTTTACATGCAAGCATAACATCTG
TCACCACGTGTTTCCATTGGAAGACATACTCTGACCTCAG..........

Sequence Detail Report

Gene Symbol (Gene ID) Aff3 (ENSMUSG00000037138)
Transcript ID ENSMUST00000039827
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 1229 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information