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Target CDS Information

Gene Symbol (Gene ID) Sox10 (ENSMUSG00000033006)
Cross Reference
CCDS CCDS49668.1
EMBL AF017182, AF047043, BC018551, ...show all
GO GO:0000978, GO:0000980, GO:0000981, ...show all
goslim_goa GO:0000988, GO:0001071, GO:0003674, ...show all
MGI_trans_name Sox10-201
protein_id AAB49282.1, AAB99738.1, AAC24564.1, ...show all
RefSeq_mRNA NM_011437.1
RefSeq_mRNA_predicted XM_006520672.1
RefSeq_peptide NP_035567
RefSeq_peptide_predicted XP_006520735.1
UCSC uc007wsu.2
UniParc UPI00000019C3
Uniprot/SWISSPROT Q04888
Definition protein_id:ENSMUSP00000039466
translation:
MAEEQDLSEVELSPVGSEEPRCLSPGSAPSLGPDGGGGGSGLRASPGPGELGKVKKEQQD
GEADDDKFPVCIREAVSQVLSGYDWTLVPMPVRVNGASKSKPHVKRPMNAFMVWAQAARR
KLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIEEAERLRMQHKKDHPDYKYQPRRRKN
GKAAQGEAECPGGEAEQGGAAAIQAHYKSAHLDHRHPEEGSPMSDGNPEHPSGQSHGPPT
PPTTPKTELQSGKADPKRDGRSLGEGGKPHIDFGNVDIGEISHEVMSNMETFDVTELDQY
LPPNGHPGHVGSYSAAGYGLGSALAVASGHSAWISKPPGVALPTVSPPGVDAKAQVKTET
TGPQGPPHYTDQPSTSQIAYTSLSLPHYGSAFPSISRPQFDYSDHQPSGPYYGHAGQASG
LYSAFSYMGPSQRPLYTAISDPSPSGPQSHSPTHWEQPVYTTLSRP

Chromosome 15
Length
Position(start - end)
7,777
79,155,938 - 79,163,716
Orient to Chromosome minus
Link Location : (15:79155938-79163716)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Sox10 (ENSMUSG00000033006)
Transcript ID ENSMUST00000040019
Reports
substitution
cSNPs4
Insertion11
Deletion12
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num4
non-synonymous num0
synonymous substitutions 79156004 (p.Ser445Ser), 79156196 (p.Thr381Thr), 79156385 (p.Tyr318Tyr), 79159357 (p.Arg159Arg),
non-synonymous substitutions
B6 transcript
(ENSMUST00000040019)
MAEEQDLSEVELSPVGSEEPRCLSPGSAPSLGPDGGGGGSGLRASPGPGELGKVKKEQQD
GEADDDKFPVCIREAVSQVLSGYDWTLVPMPVRVNGASKSKPHVKRPMNAFMVWAQAARR
KLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIEEAERLRMQHKKDHPDYKYQPRRRKN
GKAAQGEAECPGGEAEQGGAAAIQAHYKSAHLDHRHPEEGSPMSDGNPEHPSGQSHGPPT
PPTTPKTELQSGKADPKRDGRSLGEGGKPHIDFGNVDIGEISHEVMSNMETFDVTELDQY
LPPNGHPGHVGSYSAAGYGLGSALAVASGHSAWISKPPGVALPTVSPPGVDAKAQVKTET
TGPQGPPHYTDQPSTSQIAYTSLSLPHYGSAFPSISRPQFDYSDHQPSGPYYGHAGQASG
LYSAFSYMGPSQRPLYTAISDPSPSGPQSHSPTHWEQPVYTTLSRP*
MSMv4 transcript
MAEEQDLSEVELSPVGSEEPRCLSPGSAPSLGPDGGGGGSGLRASPGPGELGKVKKEQQD
GEADDDKFPVCIREAVSQVLSGYDWTLVPMPVRVNGASKSKPHVKRPMNAFMVWAQAARR
KLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIEEAERLRMQHKKDHPDYKYQPRRRKN
GKAAQGEAECPGGEAEQGGAAAIQAHYKSAHLDHRHPEEGSPMSDGNPEHPSGQSHGPPT
PPTTPKTELQSGKADPKRDGRSLGEGGKPHIDFGNVDIGEISHEVMSNMETFDVTELDQY
LPPNGHPGHVGSYSAAGYGLGSALAVASGHSAWISKPPGVALPTVSPPGVDAKAQVKTET
TGPQGPPHYTDQPSTSQIAYTSLSLPHYGSAFPSISRPQFDYSDHQPSGPYYGHAGQASG
LYSAFSYMGPSQRPLYTAISDPSPSGPQSHSPTHWEQPVYTTLSRP*
homology100.00 (467 / 467)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Sox10 (ENSMUSG00000033006)
Transcript ID ENSMUST00000040019
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........CTCTGTTTGTCCCTCCGTGGGCACCCCAGTTCCGCCTAGCCACTCAACCA
GGAAAGGGTGCCTTCACTGAGAAGAGAAAAGGACACTAACTAGGCTGTAGAGGTGAGACC
AAGGATAGGAGCCCTGGGGCAACGGGAGGAAGAACAAAGAATCGGCTTGAGGGGCAGAAA
GGGGGCGGGGGCTGTGAGAGCCAGGGCAGTTCCTGTCTTTTCTCAGTGTGGGAGAGTAAG
GGACTTCACATCCAGACATCCAGGACTGGGTCTCCTTTCCAGGGAGAGGAAGAGCCCTGC
ATGGAAGTGAGAGACACCCCCTCCCCAAAGCCCCCCTCACCCTTCTTGAAGAGTAGGGCA
CTCTCACCCTGCCTCAGCCTCCTGTGTCTCTCTCTATCCTGGGCCAGTCCAGCCTTCTGG
ATGCTAGGATCTTAGAGAGAAGGGATCACGGATTGAATCTGGGGGTTGTATGTGTACAGG
GCAAAGGTTATCCAGCTGCGGTCCTGGGGGGCTTGGCTTGGGTCAGCTGTGTTGGAGAGG
ACAGGAGAAGGCGAGGGTCTGATACCTACTGCAGGCTGCGGTGCCTAGCACACAGTGGGA
CTCAGTGGGATTTCTCAAATGAAGCAACACAGGCCACGACCCTTTCAAGTTATCCACTCT
CCTCACACCTCTCTCCAGTCCTTTGTCAACTGTCCATGCCACCACCTGTGGCAATGGTTT
AGGGTCCCAGGCAACAGGTTCTGACTGTGCCACCTGTATCTCTCCCTTCCCAGACCTAAA
ATACCCCCATGCTCACACCAGACGCCAAACCCAAGCTGAGTCCAGGGAGACGGGCCTAGG
CAGCAGTGCGGGCCACAGGGCTGGGGTTGGGGGGGGGGGGGCTGGGCAGAGTGGAGGCGT
CCTGGGTGTTGGGGATGAAGGCAGCGCTGGAGGCTCCACCTTCTGCCCTTCCCTCCCTCC
TTTCCCCCTCCCCTCCCCCTCCTTCCTTCCCCAGCCGTCTGCAGCGGCTC
1 EXON 1 79,164,282 79,164,490 - - 209
AGTCAGTCTCGGCTGTCCAGCCAGGGTGTTTGGTGGTGAGGATTCAGGCTCCGTCCAGAC
AAGGCAGTGGCCTGAGGCTCAGGGCCCCCCAGCCCCTCCCTCCCAGTCCATCAGCGTCAC
TCCCCAGCCCCGAGCTGGACCGCACACCTTGGGACACGGTTTTCCACTTCCTCAGGACGA
GCCCCAGACTGGAGGAGAGGTCGGAGGAG
INTRON 1 - 2 79,163,795 79,164,281 487
GTGAGTGCGCACTGCGCCCCTGGGC..........CCATCGCGCCCTCCTTCCCGTCCAG
2 EXON 2 79,163,289 79,163,794 - 2 506
GTGGGCGTTGGGCTCTTCACGAGGACCCCGGCGGCGGGCCCGGGGGAGGCGGCCGAAGCG
GCGGCGGCCGGGAGCGACATGGCCGAGGAACAAGACCTATCAGAGGTGGAGCTGAGCCCT
GTGGGCTCGGAGGAACCCCGCTGCCTGTCCCCAGGCAGCGCGCCGTCGCTGGGACCCGAC
GGCGGCGGCGGTGGCTCGGGCTTGCGAGCCAGCCCGGGGCCCGGTGAACTGGGCAAGGTC
AAGAAGGAACAGCAGGACGGCGAGGCGGACGATGACAAGTTCCCCGTGTGCATCCGCGAG
GCGGTCAGCCAGGTGCTCAGCGGCTACGACTGGACGCTGGTGCCCATGCCCGTGCGCGTC
AACGGTGCCAGCAAGAGCAAGCCGCACGTCAAGAGGCCCATGAACGCCTTCATGGTGTGG
GCACAGGCGGCACGCAGAAAGCTAGCCGACCAGTACCCTCACCTCCACAATGCTGAGCTC
AGCAAGACACTAGGCAAGCTCTGGAG
INTRON 2 - 3 79,159,404 79,163,288 3,885
GTGAGCGCTGCCCCGCCCCAACACC..........TGGCTCTGGTGTCCTCCACTCCCAG
3 EXON 3 79,159,135 79,159,403 2 1 269
GTTGCTGAACGAAAGTGACAAGCGCCCCTTCATTGAGGAGGCTGAGCGGCTCCGGATGCA
GCACAAAAAGGACCATCCGGACTACAAGTACCAACCTCGGCGGCGGAAGAACGGGAAGGC
AGCCCAGGGGGAGGCAGAATGCCCAGGCGGGGAAGCCGAGCAAGGAGGGGCTGCTGCTAT
TCAGGCTCACTACAAGAGTGCCCACCTGGACCACCGGCACCCAGAAGAAGGCTCCCCCAT
GTCAGATGGGAACCCAGAGCACCCCTCAG
INTRON 3 - 4 79,156,642 79,159,134 2,493
GTGAGTGCTGGGTTCTGGGTTCTGC..........TCTTGCCCCCCTCTCTCCTACCCAG
4 EXON 4 79,154,913 79,156,641 1 - 1,729
GCCAGAGCCATGGCCCCCCAACCCCTCCAACCACCCCAAAGACAGAGCTGCAGTCCGGCA
AGGCAGACCCCAAAAGGGATGGGCGCTCCTTGGGGGAGGGCGGGAAGCCCCACATCGACT
TCGGCAACGTGGACATCGGGGAGATCAGCCACGAGGTAATGTCCAACATGGAAACCTTTG
ATGTGACTGAGCTGGACCAATACCTGCCACCCAACGGGCACCCAGGCCATGTGGGTAGCT
ACTCGGCAGCTGGCTATGGGCTGGGCAGTGCCCTGGCTGTGGCCAGTGGACACTCTGCCT
GGATCTCCAAGCCACCAGGTGTGGCTCTGCCCACGGTCTCGCCCCCTGGTGTGGATGCCA
AAGCCCAGGTGAAGACAGAGACCACAGGCCCCCAGGGACCCCCACACTACACCGACCAGC
CGTCCACTTCCCAGATCGCCTACACCTCCCTCAGTCTGCCCCACTACGGCTCCGCCTTCC
CCTCCATCTCACGACCCCAGTTTGACTATTCTGACCATCAGCCCTCAGGACCCTATTATG
GCCATGCAGGCCAGGCCTCTGGCCTCTATTCAGCCTTTTCTTACATGGGGCCCTCCCAGC
GGCCCCTCTACACTGCCATCTCTGACCCCAGCCCCTCGGGGCCCCAATCCCACAGTCCCA
CACACTGGGAGCAGCCAGTATATACGACTCTATCCCGACCTTAGAGGGGCCCTGTCACCA
CCAGTGCCCACAGGGCCCCGGGGCCCCTTCCCCCAGCCTGTGTGCCCTGCTCCTCATCAG
CCTCAGGCTTGGCAGTGGAGGAGGCTGCAGAGGCTGACAGCAGCAGGAAGGCTTCTGCCA
GCTCCTGCCCTGATGACCTCCACCCACCCCAGCTCTGGAGGCCAAGCCCTGACTGAGCTG
GCAAAGGAAGTTTGGTGGCTCTCCCAGACTGAGGGTGAGGGGCCACCCTTCCCCAGAAAT
GACCCTCTATCCCAGGACCTGAGAGTCCTGCTCAGTCCTTCAGGGAGGCAGGAAGGGTTA
GGGTAGGAGGCCTCACTGCTCCTGTTATCTCCTTGGAGACCAAGGGGCCCGTGTGCTACT
GTGTCATTGCCTAAGAGCTAGGCTGCCCAGAGACCTGCCTCAAAGCCTGGAGCTGGTTCT
GTCCTGTCACTAAGGACGCACTGAGGACAGCTTTGAACAGCTTTGTAAAGAGCAGGGTGG
GACACTCTGATCCTTTCTCTGCCCCCTCTTCACCTGAATGTGGGAACTGGTCAAGGTCCC
CAGATCCAGTTCCGTGTCAATAACCTCATCCCTTGCCTAACTGAGGAGAGTCCCCATGTT
CTTCCCATCCCACCCCAGGTGAGGAGCCAGGGGCTCCAGGAAAGAGTCAGAGGCAATCCA
CCCAGCCTTCTTCTCGACTTCTGTCAGCCTCAAGCCCCCAGGCTCAGAGTTAGCATGGCA
CGGCCCTAGCCCCTGGGTTGCTGGCAGCAGGCTGGACACTAAACCCCTGCCATGTACAGT
CTACCTTTGCCTTGCACCCTTTGCTCCAGCGATACCTTAATAAAGTACGTAGCTCTGTCT
CCCCATCTCCTGTCTGCAGCCCAGTCCACATGTAACACATCGCTGCCCCTTTATTTATCT
CCATAGTCGCCATGTTCCTATCCCTCTAGCTACTCCAGCCCCGATTAACTTGCATTAAGC
ACTCCAAGTAATAAAATCAATGCTTCTGGTTGCCTGCTTGGTGGCCTGA
3' upstream sequence
CCTGGCCTGTCTCTTGGTCTCTTACCCCTTACCTGTGCTTCCTCGAAGGTTCCCCACAAG
CAGCCAGCACAGTGCAAAAGTGAGATTCCTTAGGCGCTTTCCCCCTAAGGACCTGTGGAC
AGTGGAGTGAGTCAGGCAGCCTCCTGATGGGTGGGTGGACCTATGTCCAGGATCTAAGCC
TCAGAAGAAAGCCACCCATGAGGGGCTACCCACCTCTCTCAGGTCCAGCTCTAGCGCCAA
CCTTCTGCTCGGCTCACTGTAGCCACTCTGTCGTGTGACAGAGGGGAGTCTGTGAGACAC
TCAGGGGACAGCTTTTCAAAAAGGAGCAGTGGACTAGTCCCCCTTGTCTCCCAGGTGAGA
AGTCAGGCCTGGGTCCATAGAACTTATGGGTGTGAATAGACCTTCTGTGGCTACACACCT
CCATCCATCACCTTCCCCAACACAGACAAACGTGTCACACACACACACACACAGAGGGAG
AGAGATCGAGAGAGAGATCGTCTATGCCAGCATCTAGCTGAGCCAGCAGACTGTTTCAGT
CTAAGCCATCAAACCCCATCCATTGAGCTCCCTCAGTTTGTCCTCAGTAGGGACCATGAC
CTATGCCACTGCCAAGCTCATGTCACCAAGATCAGGGGAAATCTCTACCAAGTTGTTCTG
ACAGGAAGTGCCAACAGCTGGGCATTCCCATAGTGGCAAAGCTCCTAGTGTGTTCCTGCT
TGTTCCCTTAGCCAGGGGTATCCATCCTTTTGGGATCTGACGGAATAGCCCTGGGAAGCT
GGTGCTGACAGCTCGTCCCCTGAGCTGCTCCAGGTGCCACGCCATCCCTCCATCCCCATC
AGCCCAAGGGAGGATGGGTACCAGGAGCCAAGCCCAGCTTTACAATGGGAACTGCAACTG
GTAAGCCCTTCTGACCACCTGCCCCAGCTGCCGGCTGCCTTGAAGGTTGGTATCTGAAGC
CCTTGCTCTTCTCAACGGTATCTGAAAGAGCATCGGACCA..........

Sequence Detail Report

Gene Symbol (Gene ID) Sox10 (ENSMUSG00000033006)
Transcript ID ENSMUST00000040019
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 467 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information