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Target CDS Information

Gene Symbol (Gene ID) Rorb (ENSMUSG00000036192)
Cross Reference
CCDS CCDS37933.1
EMBL AB258405, BC024842, BC058269, ...show all
GO GO:0003700, GO:0003700, GO:0003707, ...show all
goslim_goa GO:0001071, GO:0003674, GO:0003677, ...show all
MGI_trans_name Rorb-001
OTTP OTTMUSP00000027181
OTTT OTTMUST00000056531
protein_id AAH24842.2, AAH58269.1, ABG77269.1, ...show all
Reactome R-MMU-212436, R-MMU-383280, R-MMU-74160
RefSeq_mRNA NM_146095.4
RefSeq_peptide NP_666207
UCSC uc008gyc.2
UniParc UPI00001ECD12
Uniprot/SWISSPROT Q8R1B8
Vega_transcript OTTMUST00000056531, Rorb-001
Vega_translation 222450, OTTMUSP00000027181
Definition protein_id:ENSMUSP00000047597
translation:
MCENQPKTKADGTAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQ
RNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQKHQQRLQEQRQ
QQSGEAEALARVYSSSISNGLSNLNTETGGTYANGHVIDLPKSEGYYSIDSGQPSPDQSG
LDMTGIKQIKQEPIYDLTSVPNLFTYSSFNNGQLAPGITMSEIDRIAQNIIKSHLETCQY
TMEELHQLAWQTHTYEEIKAYQSKSREALWQQCAIQITHAIQYVVEFAKRITGFMELCQN
DQILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYGGMQMFKALGSDDLVNEAFDFAKNL
CSLQLTEEEIALFSSAVLISPDRAWLIEPRKVQKLQEKIYFALQHVIQKNHLDDETLAKL
IAKIPTITAVCNLHGEKLQVFKQSHPDIVNTLFPPLYKELFNPDCAAVCK

Chromosome 19
Length
Position(start - end)
63,165
18,937,880 - 19,001,046
Orient to Chromosome minus
Link Location : (19:18937880-19001046)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Rorb (ENSMUSG00000036192)
Transcript ID ENSMUST00000040153
Reports
substitution
cSNPs6
Insertion55
Deletion59
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num6
non-synonymous num0
synonymous substitutions 18938009 (p.Thr428Thr), 18952206 (p.Leu403Leu), 18955136 (p.Val350Val), 18962085 (p.Glu244Glu), 18977732 (p.Gln173Gln), 18977762 (p.Ser163Ser),
non-synonymous substitutions
B6 transcript
(ENSMUST00000040153)
MCENQPKTKADGTAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQ
RNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQKHQQRLQEQRQ
QQSGEAEALARVYSSSISNGLSNLNTETGGTYANGHVIDLPKSEGYYSIDSGQPSPDQSG
LDMTGIKQIKQEPIYDLTSVPNLFTYSSFNNGQLAPGITMSEIDRIAQNIIKSHLETCQY
TMEELHQLAWQTHTYEEIKAYQSKSREALWQQCAIQITHAIQYVVEFAKRITGFMELCQN
DQILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYGGMQMFKALGSDDLVNEAFDFAKNL
CSLQLTEEEIALFSSAVLISPDRAWLIEPRKVQKLQEKIYFALQHVIQKNHLDDETLAKL
IAKIPTITAVCNLHGEKLQVFKQSHPDIVNTLFPPLYKELFNPDCAAVCK*
MSMv4 transcript
MCENQPKTKADGTAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQ
RNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQKHQQRLQEQRQ
QQSGEAEALARVYSSSISNGLSNLNTETGGTYANGHVIDLPKSEGYYSIDSGQPSPDQSG
LDMTGIKQIKQEPIYDLTSVPNLFTYSSFNNGQLAPGITMSEIDRIAQNIIKSHLETCQY
TMEELHQLAWQTHTYEEIKAYQSKSREALWQQCAIQITHAIQYVVEFAKRITGFMELCQN
DQILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYGGMQMFKALGSDDLVNEAFDFAKNL
CSLQLTEEEIALFSSAVLISPDRAWLIEPRKVQKLQEKIYFALQHVIQKNHLDDETLAKL
IAKIPTITAVCNLHGEKLQVFKQSHPDIVNTLFPPLYKELFNPDCAAVCK*
homology100.00 (471 / 471)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Rorb (ENSMUSG00000036192)
Transcript ID ENSMUST00000040153
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TTAGCTTAGTAACTAGTGAGTTTTCCGGAACCCTTTCTTGTATATCTTTA
ACTTACATTAGCACATCCTCTACCTTCTCCTGTGCCTGCTCCCAACCCCAATCTTTCCCA
ACCTCCCATTCCCCAGCAAGACCCAAGGAGCATCTTAGGAGAGGAGACAAAGGCACGTTA
AGAGCTAGAGGATAAGGATGCATGTTGAGAAATGCCAAGTTGTAGACATGGCAAGGTTAC
AGCGCCCATGACCCCACAGCAGCCATGGTTGCCTAGGCAAGATCTACTCCATCTCAAGCA
GGTCAAAATTCCCACAAAAATAGGATAGGTAACCTGCAGGCCTTACCACTTACCCAGCAA
CAAGGGCAAAGAAAGGAAACTTTCTGGGTATTTTCATCGCTCTCATTTTACAAGAGGAGA
CACTGAGGTGCTCCAATAGAATAGAGTCCTTTAGACTTCGGGGTTAGTGTGAAGTCCCTG
TCCTGGTACCAGGCTGTATTGCAGGTAGGCTGTAAGATATACTCATTTTCTTCAACTATA
AAGTGTCTCTGTGTCCCATTAATTATCCCTCAGACAGTTATAATCCAATGCTAGGTAATC
CTTATACACGAGGCCTCAGTAAAAGGGGCAAAATAATTACAAACCACTGCTGAATGAAGT
CTGCACTAGACTGTCAGGGTCACAGCTTGTCTTGAGATATTTGTCAGGTGCGCACTGGGT
CCCGCTCCAGAAGGATGAAAACAAAGGGGACTTGAAGTACAGAAAGAATACACAGCAACG
TGATTCATGGGGAGGGTGGAGGATGTTTAAACTGCTATTTTACAATTTAGCAAATGTACT
CGAGTAAATATCAAAAAGAAGAAAGGAATTTTTTCTTCTGTGCCTTCCTGGGGTGAGGAA
GCCTCTCTTTCACCCTTACTTAATGAAACGAAGCCAGTTGATGCCTCTAACTCTTCTTTC
GTCTAATCTCATTAATGCAGTCTGTTGGGATTCTGGTTGTGGGATAACAT
1 EXON 1 19,001,007 19,001,117 - 1 111
AGGGGCAGTCCTCAGACCTCAAGTGAAACGGGGAGATATTTTTCAGTCAGGCTTTTCACT
GCTCCGTCAGAATGTGTGAGAACCAGCCCAAAACTAAAGCTGACGGCACTG
INTRON 1 - 2 18,988,117 19,001,006 12,890
GTGAGTTGCGCTTTTTCTTCTGTCT..........CATTCTTTTGTTTCTCCTCTTTCAG
2 EXON 2 18,988,031 18,988,116 1 0 86
CACAAATTGAAGTGATACCATGCAAAATTTGTGGCGATAAATCCTCCGGGATCCACTACG
GAGTCATCACGTGTGAAGGCTGCAAG
INTRON 2 - 3 18,983,484 18,988,030 4,547
GTAAGGACTTCCGCATTGTGATGGT..........CCTTGCTTTCTCTTTTCCTCTTTAG
3 EXON 3 18,983,342 18,983,483 0 1 142
GGATTCTTCAGGAGGAGCCAGCAGAACAATGCCTCTTACTCCTGCCCAAGGCAGAGAAAC
TGTTTAATTGACAGAACCAACAGGAACCGTTGCCAACACTGCCGCCTGCAGAAGTGTCTT
GCCCTAGGAATGTCAAGAGATG
INTRON 3 - 4 18,977,983 18,983,341 5,359
GTAAGCCTCTCCCTTTCTGTTCCTT..........TCTTTTGCTCTTCTTTCCGTCCCAG
4 EXON 4 18,977,581 18,977,982 1 1 402
CTGTAAAGTTCGGGAGGATGTCCAAGAAGCAGCGGGACAGCCTGTATGCTGAGGTGCAGA
AGCATCAGCAAAGGCTGCAGGAGCAGCGGCAGCAGCAGAGTGGGGAGGCGGAGGCCCTCG
CCAGGGTGTACAGCAGCAGCATTAGCAATGGCCTCAGCAACCTGAACACCGAGACCGGCG
GCACATACGCCAACGGGCACGTCATTGACCTGCCCAAGTCTGAAGGTTATTACAGCATAG
ATTCCGGTCAACCGTCTCCCGATCAGTCAGGACTGGACATGACTGGGATCAAACAGATAA
AGCAAGAACCTATCTATGACCTCACATCTGTACCCAACTTGTTTACCTATAGCTCTTTCA
ACAACGGGCAGTTAGCTCCCGGGATAACAATGTCTGAGATCG
INTRON 4 - 5 18,962,147 18,977,580 15,434
GTAAGTCCGAGTCTTCCCCAAGTTT..........AAATTGCTTACCCTTTTTCTCATAG
5 EXON 5 18,962,025 18,962,146 1 0 122
ATCGAATTGCACAGAACATCATTAAGTCCCATTTGGAGACATGTCAGTACACCATGGAAG
AGCTCCATCAGCTGGCATGGCAGACCCACACCTACGAGGAAATCAAGGCGTATCAAAGCA
AG
INTRON 5 - 6 18,960,542 18,962,024 1,483
GTACTCCAAGAACCATGGGGAACAG..........AAGGGCTGTGTCCTCTCTGCTTCAG
6 EXON 6 18,960,409 18,960,541 0 1 133
TCCAGGGAGGCTCTGTGGCAGCAGTGTGCCATCCAGATCACCCATGCTATCCAGTACGTG
GTGGAGTTCGCCAAGCGGATAACAGGCTTCATGGAGCTGTGTCAGAACGATCAGATCTTA
CTTCTGAAGTCAG
INTRON 6 - 7 18,957,335 18,960,408 3,074
GTGAGCCTTCTGACTTGTGAGGGTC..........CATTTTTAATTATTTTATCTCATAG
7 EXON 7 18,957,227 18,957,334 1 1 108
GTTGCTTGGAAGTGGTTTTAGTGAGAATGTGTCGTGCCTTCAACCCATTAAACAACACTG
TTCTGTTTGAAGGAAAATATGGAGGAATGCAAATGTTCAAAGCCTTAG
INTRON 7 - 8 18,955,153 18,957,226 2,074
GTAAGTTTCCCTTGGATGACAACAA..........GTTTAAGATTTCTCCTTCCTTTTAG
8 EXON 8 18,955,042 18,955,152 1 1 111
GTTCGGATGACCTAGTAAATGAAGCATTTGACTTTGCGAAGAATCTGTGTTCCTTGCAGC
TGACTGAGGAAGAGATTGCTCTGTTCTCCTCTGCTGTTCTGATATCCCCAG
INTRON 8 - 9 18,952,271 18,955,041 2,771
GTAGGAAGGTGCCGGTCCCTTACCT..........ATTCTTCGGCTTTTCCCCTTGTCAG
9 EXON 9 18,952,158 18,952,270 1 0 113
ACCGAGCCTGGCTGATCGAACCAAGAAAAGTCCAGAAGCTTCAGGAAAAGATTTATTTTG
CACTTCAACATGTGATTCAGAAGAACCACCTGGATGATGAGACCCTGGCAAAG
INTRON 9 - 10 18,938,036 18,952,157 14,122
GTAAGTCTTCAAGTCACAGACCTGC..........CTCCCTCTGTCTCTGTGTTCTGCAG
10 EXON 10 18,930,605 18,938,035 0 - 7,431
TTAATAGCCAAGATACCAACTATCACAGCAGTCTGCAACTTGCATGGGGAGAAGCTGCAG
GTATTTAAGCAGTCTCATCCAGACATAGTGAATACACTGTTTCCTCCATTGTACAAGGAG
CTCTTTAATCCTGACTGTGCTGCGGTCTGCAAATGAAGGGGACGAGAACTCTCAGAGTCA
TGGAATGCATCGCCGTTAAGACAAAAGCAATGTGTTCATGGGGACTTAAGGAAAATTTCA
CTACTGCAACATTAGGAATGTCCTGCACTTAATAGAAATATTTTTCACCGCTACAGTTTG
AAGAATGTAAATATGCACCTGAGTGGGGCTCTTTTGTTTGTTCGTTTGTTGTTTGTTTGT
TTTTGAAATGATCATAAATATACAAATATAGGACACTGGGTGTTATCTTTTTTAATTTTA
TTCGGGTATGTTTTGGAGACAACTGTTTATAGAATTTTATTGTAGATATATACACAAACA
GAGCCGTACTTTCCATGATTACTCTTCCCGTTGATTGATTGTTCGACTCTAATTTAAGAC
GATTCCACTTACTAGGCTTTACCTATTTCTATGTTTTTAGGTAGTTGATGCATGTGCAAA
TTCGTAACTAACTGTCTTGGAAAGTACTGTGCATGTATGTAATGAGTATATAATATGTAA
GAGTATTATATATGACTATTACGTATTCATGCACTGTGGCTTAAAATACCATGCCCACTA
GCAATGGAGGTTCAGTCAGGCTTTCATGTGATTTGCTGTTGTTATATGTTACTTTTATGT
TAGACAATCAGGGTTTTCATTTCCAGCCAGAGTTTTTATCCATCCATAACAACATGATAG
GACCCATGCAAAAGGAAATCTACAAAAGAATCGGGGTAACACATAATTGTTCTTTTAAAA
GCTCCATTTCTATCAATTACTTCAAAGCCCCATCAAGATGGCACATACCGGGAAGAGGGG
AAGCCAAAAGGATTTGAAGCCACTTTCCTGTTTTATAGACCAGATAATGATATTGTCTAT
TTATTACCATATTACAAAATATTGAGGTTCCTCCACATTGGATTTGGAATCCAATTCTGA
ATGAAACTTCACTTTGGTGGTTATAATTTCTTCAAGACAACAAAAAGTTCAGTCTATAGA
TTATCACCACCATCAACGTTTTTAGAAATATTTGACTAGAAGTATAAAACAAGTTCCTTG
TACCCATTTTGTGTAGATATTTTCTAACCATTTTCCCAACGAACAAAGAGAAATAGAGCA
TACAAAGTTAAGAAGTAAATTCACTAAATTATACTCATGGTAATTTGTTAGAAATGAGAA
AATAGGCGGGAGCCTGTTTTTTCAACTTCAAAATGCTATATTATAAAATATAGAAAAAAT
TCAGATTAGAAAACAGTAAATCTTTTGTCTATGGGACTAATATATCCCAATGCCAAAATT
CTATCCTACACAGTTATAAATGACATCCTCTATTCAAACTGGTTATTTTTTAGCCACTAA
AATGTATAGAATGGAACGGCAACCTATACAGGTTCTTCACCTACTTTCCTACAAAATTAA
GCACCAGAAAGGCATGAGTTAGAAGCTATTTGTTCTCCCTGTTCCTGGAAGGCCTAGGTC
TTTAGTATGAACTAGTCTAAGCCACACACACGCACGAACATGCACACAGATGACACAGCC
ACCCACAGACACACACACATACACACACACACACACACACACACACACACACACACCGCT
TTGTAGAAACTTGGGTCTTTTGGTTTGGGTTTCTGGGTTTGTTTGTTTGTTTTTTCTTTT
CTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTGAGTCATTTTTAGTCCCTTATGCTCTCTCAAAGTTCTGGATT
GAGAGTCATCTTCAGGATGCCTCAGAACTCCAGTGGATGATCAGAGCACAGTAGTGTTAG
TCTTGCCTTTCAGAAAACGGGGGCCTTTCTCACCTCATGATTGATGAATTCCAAGCCATT
GGGGGAAAACAAAAAGACTTTAAAATAATGAATCTCTTTTTCAACCACTGTTATATTCAA
TTAATTTAACTACATTGAACCAAATTACCTTTGGTTCTGAGAAGACAGCTGTAGACTGCT
TATTATGCTGCTACAGGGACTCAGTTCTTTTTGGTGTAAATGTCACTCCTGCTAGCTCTT
TGTATAAAGAATTAATTCCAAGAGTCATATTTCCTTCTAATGGAAAGATTACTTTACTGA
TTGCTAGGAAAACAGGGTAATGGAAGGCACTCAATTAAACCAAGCCGTTTCCAAATGCGA
TATATGTTTTATGATTGGCTTGTGATAGGCAATGCTTACTGTGTCTACTTGATGTTCCCC
TTTGAGCTTTGAACTCATGTCAAACTTTGTTTTCATTGTTCTGTTGGCCCAGTGTTTCCC
ATTGTCAGCCTGAAGATCCCACTGGGCTGCAAAGGGGAATCATTTGTTGCCTTCAGTTTA
CCTTGGAGGATTTACATCGGCTCAATTGATGAAGTAGCTAAGAATTTTTTTCCTCCCTTG
CCCCATGGGTGGTGTAGGAAAGAGATTGTTCCCCACATTTGCCTCAGGAGATACTGGTTT
TGAAATTGTGTCATTTCCACTAGCCCTAGCCTTTCATTGGGATGGCATGAACCTTTTGAA
GCAGAGGGACAGGAAACAGAGCTAGGAACTGAACCAGAACCAAACAGTGGTAACTAGGAC
CGGCTCAGCCCACTTTCCACCCAGAGGAGAGAGCTCCAGTTTTGGCTTCAGTTGCCGAGT
TTTCCCTTTAAAGAGAAGTCATGTTTTTAACGGTAAGGAAGCCTTTAAACACTGCCCTTT
GAACATCTCAGTTGACTACATGAAATTTCAGTAAAAAACAAAAACAAAACCAAACAACAA
CAAAAACTCTCTTTACCACACACAGTCTCAGCAAGCTGTTCCTTTTCCTGAGAATGGGCC
AATGTTCAGAATGTGCTAGGATGAGGTGAACATTGGAAGAAGGAACTGGGCTCTGAAGTC
TCCTTTAAACCTCAAGGATGACAATCACTGCTTGATGCAGATGTTGCACTGAATCTGCTC
AGGGATGCTTCATTTAAAAAAAAAAAAAGTGCGTCGAGAAGGGGGAGGGGCAAAACAGGA
AACTGAAAACAAAATGTAAATGCCATAAATTGAACAGGTCAGCGAGAGACCCTCCCTGAC
AGGCTTCAGAGAGGCCACAGTGGCTTAAGGCAGAAAATTGAATGAACTTCTTTTTCTTCT
TTGAACCTGCCTAGAAGTTCTACCCAAGTAGAGACATTGGTTCCCGTCTCTAGAATGAGC
AAGGAACAAGATAACAAGACTGCCCCCCCCCCCCCACATATCTCCCAATTAATCCAGGCT
TCCTGTGTAAATCCTTAGCAAAGGAAATACAGGGTCTGATCTAAGGGTCAGAGGTCAGAG
CTGATAGGCAATTGAGCAAAACAAACGCTGTGCCTCTGTACTCTGTAGAAAGAAAGACAA
ATCTTGAATAAAAATGAATAATTTCAAATCTTGGTTGGCAGTTACAAATGGCCACATTGT
CTGTGAATTGGTCTATCTTTGTGGAACATTTTTCTGGGGCTCTTTTTTTTTCCTGATAGT
ACATTGAGGGTCAGAATAGACTTTCCAAACACACTCTGCATTTTCTTTGTTTTATTTCTT
TCTTCAAGGCTCTGGGCTAAAAGACCTTCAAGTAAAAAAGCAGAGAATACTGTGGTCTTA
GGCGATTAGATTCCCCTGGCAGCAGCTGGAAGACTCTGCATTGTACCCAACTGAGTATTA
ATGGTAGGCATCAGGGGCCATCAGTGCATTTATATCATGGCTGCCTTATCAATCAAGCAG
GTTACATCCCAGCAGACAAGCTGAGCTATTTGTAGAAAGCCTTGCAGATGGATGGCCAAC
TCTTACTGCCTCTTCATAGTACTATGTGTAAGGGGGCTCAAATTCTAAAATCCAATACAT
GGGTCCTAAGGACAACCAAAAATTTTACTTGCCTCTCCCCCATAAACACCAGAAATGAGT
AATGATGGTGTAAGCCCACATCCTGTTTATTCCACAAACAGGAAATTTTTGAGTGCTGGC
AAATCATTTTTCCTGGCTTTTGTTTGGTTGGTTTTTTTTTTTTTATTTTAGGGGGTTTTT
CTTGCCCATATTCACTTTTGTTTCTAATAAAATTACCACAAAGGGCAGTAGGTTCAGGCA
AGAATGTCTCTACTCTGACAAACACCATTCTGTAGTTAGCAGTAGTTCCTAAGCACACAT
CTGAAGGGAAACTTCTGCCGAGTCTCCTTCTAAAGAGGCAGGAAGGAAACACTACCATGT
AGATGAAGTGCTATTTGATGTTCTATATTTGCAACTGCTGGTGCATGTGTAGCCAGAAGA
AAAACCTGGTGTGGAAAGTCATGGAGTCTTTTCACAAAAAGCTGGTTACCTATTTTTCTT
TTTAAGGGGAGTATGTTTTAGAACCAGAGGTGCCTGCCTATTTGAATCAACACAAAACCC
CTAAAAATGTCAAGGCATGGATGCAAATAGTGCTGTGGAGCTCGGTTAAGTTAGCCAGGA
AATGCCCCACCTACAATAGGGCAACCAACATTCGGCCAAGGCCTCATGCCCACAGTGCTT
CTGAATTATGGGGGCAGACTCGTTTGTAAACGATGAAAGTTGTCTATGAGTATAGTACAC
ACCAAACACATCCCCGGGCAGAAGAGGGCCATAGGCAGCCATCTTGCCTCCTCTTGTTGG
TATTAAAAACCACATCTAGAAGTCTATTGGGTTAGAGCCAGTCAGGCCAGGTTTGATAGA
GGGCGACACTGGGATGCTGGCGCACAGTGGGTGAGAGAAGAGATACTGCTGTTCTCCCTC
TCGATCTAGTTTCCATATTTTCCTATCACTACTCAAAGATATAATGACAGGTGGCTTGAA
CAAAGTAGCAATCGAAAGATAAAGGCGAATCCACTGAATGATGGCTTACAAAAGACACTT
GCATGTGTCCCACTGAGCTCCACTGTGGAAGCGCCAAAGGGAACTAGATGTCTTGTCCAT
TTTTTTTTTCCTCTGAAAGTCAGATATATAACTTTCATGTTTTTGAGCCTGTATATGTGT
CCTTAAATGTATGGCTTCAAATCTGTGACACTTTCTCCCTTTCTCTTAATTGTACCTTTC
TGAGCAATTTATTCTGTCACCAAGATCGCCTCGCCCCACCCCCCTCTTGTTCTGAAGTGC
AGGTCACAGGTCACTGGTTCCTACACAGCAGGTGGGACTGTCTGTCTGTGCACTTTTTTC
CTAAGCTGCTGAAATTCCTCCGAGATCAACTAGTCACAGCAACCGATGCTTCCTGCCTGA
CCAAAGCACAACTACAGTGGATCAGAGAAACCAGGCCAGTGGTTGTTCTCATAGCCAAAA
CTAAAGCACAAAGATTACTGGAATTAAACAAGTCCATCTACCCAACTATGGGAAATGCAG
GTGTCTGCGCCCCTATTGACAGCATGAGGCTCGTAGTATCGCTTATACTCTCGCTGTGGC
TAGTGGTGGGCGCTCCCATGTCACCAGCACAGCCGTACATAGACACTCATGAAGAATGTC
TGAAATCCACAAGCCCCACAGCACCATTCGCTTCTTCCCATTAACACACACCCAAGAATG
AAAATCACACACACAGAAAACTGAGTATGTATTGTAGAAATGTAGAGGAAAAATAAAAAA
AAATATTTTTTCAAATGTAATTACTTTTAATATATGCTTGTGGAAGGTCTAATACAATGT
ATGCTGTCTCCATACTTTTTGCTGTAAATAACTGGAGACAGTGGATACACTGGTTTTTCT
ATGTCTCTGTTTAAGCATAAGACTTTGTAACAATTTTTTAGAGGGGTTAAACAACAAAGG
TAAATATGTACTCGCTCCCTTTCTGAGTGTTAATGTACCTCTCGGTTTTTAAGCGGGAAA
TGGTTGTAATGGTTTAAGCATCTGGATGGGTTGTCAATGTTACTTGTACACTTACTTCTC
TTTGTAGTACAACTAAGAAAGGGACAGGGCTATCAATCAACCACTCCAAAGAATTTGTAT
TGAAGATTGGCCTAAGACCTGCAAACACCATCTAAACTAGACAGTGTGAAAATAGGAACA
TGTAGAAAGAAAACTGTTGTCTAAGGGAAGTCGTCTTTCCTCATAGCGAATGGCTCTGTC
CAAGCCCATTCTACACGGAAGAGCTTAAGGAAAACAAACCCTGCTTTCTGATGAACAAAA
TATTTTTGTACATGTTTATTTCTTATGAATAACTTGAGGTCAGACCACTCATTTGCTGAA
GCCATAACTGACCTCCACCAAATAAATGCAGTAAAGAAGCTGGGGAGGGGTGGGGAGAAA
CTGAGAGGTAGAAAAGTCTGAGGGTGAAGATAGCAACCGAGGGAAGAGCAGGGCTGGTCT
GGTGAAACTGGCGCTTTTTTCCCTGCATCCCAAATATGACTTTAAAAGGCTAGTATTTTA
TGATGACCGATTTATAAAATAATAATAAAAAAGATATTTAGTTAAATGAGACTTTCCAAT
ATTTTTTAAATCCCTGACAATGCTTCCTTGCTTTTAGGATTGAGATAAAAATAATTTTCC
CTATACTTCCAATGTTCTGAGGTTTAATGCTTCTGCCGTAGCTCCAGCCTACAGTGCAAG
GTGCAGAGCCGCTGAGTCCAGAGGTTGAAGCCATGGACTGGCTGGGGCGTGGCTGTTCCT
ACTCCCCAGCTGAACCGGGAGGAGCATCATGGAAAGTACAGCTTGCTCCTCCTTAGCATG
CACACCACTGTGGCGGCAGGCCGATGTTGCATTGCCACAAGTATGTAAAATAAAAGCATT
CATTCAGAAAAGCTAAGTATACTTTTTCAAAAGAGCAAGGCCTCCTGGAGTCAACCTCTG
ATTTTTCGGGAGCTGAATTAGTCTATTACCATATACTCTTACCAGCCTGTAGAGGCAAAA
GTCAAACTACAAATAAACCCAGTGATATTATGTAGTTTTTACATCTTCAATTTTCTGGTC
TCTCTCTCTCTCTCTCTCCCTCTCTCTCCTTGTTTAATATATAAGCCCTAATTTCTGTGT
ATGTGAGTAAAACTGCAGCCTGAGTCATTTAGGAAGTAAGCATTGAATTTTTTTAATTAT
AAATATAATAGATTAAAGCAGCACTCCCTAACAACTAAAAAGAGTTTTCTATTACTTTAG
AATGTAACGGGGTTTGTCCTTATTTTATGTCCTGTAAATTATTAGTTGAATACTGTTAGC
ATTCCCAGATAATGCACACATGATTTCTGAATGTTTCCTGTAAATGACAATCAATGTTTA
TGACTTTCCCTCCCTCAATGCTGAACAAATTAAAAGAAGAAAAAGAAAAAA
3' upstream sequence
GTCTTCCCGGGTGCTTTTCTTCACACACAGGGAACAAGGAAGGACTGGGTGGAGAGAGAA
GAGAACCTGGGCTTTAAGAATGAAGTCCTATAGATTCTGGCTTATAGAGTTGTCTTTTTT
TCCAGTGAAGGATGGGTAATTGTTTCACTAGAAACTTTTGTGTTTCCCAGATCTGCCCTA
AGTGAAAAGTAATTTTGGAGAATAGACCCAGAGTACATTTTGACCAAATAACATACCAGG
ATACAATCGGCTTGAGCTTGTTAAAGTGAACCGATTGGATAGACATTTTTCTACGAGTTG
TACTTCTTCACAGCTATGGCATATCGTTAAAAGAGGAGCAATGTCTCTGAAAAGTAACAA
CACTCTTTTTTCCCAGCATTTGCATAAAAAGGTCACCCACCTCAGAGCAGAGCCACAGCA
GTCCTGTCCTTTGGATTTGCTGTAGAAAGCTGCAACAAGCTTAAAATAAATGAGACACCC
CAAATATCTGACCACCACTTTGGGGTGATAATTACTGATCAAATCTCTGGATCTGGGTTG
CTTGTTGTTTTGTTTTTTTAGTAAAGTCCCACTGAAATCAATGTTTTTCAGTACACCTGA
ATGCTTTGAATCTTATTTACGTCATCCTGTAGAGTAGGTAACAATTAATAATCACAGCCA
CGTGGCAACACTGAAAAAAATGTAGTTCTAAAAGAGCCAATAGCTTTCTCAAAATTGGAG
TGATGCAGGCTGGGCTCACAAGAGTAGCAATGCTCTGAGAAAAGTGTCATGAATCGAGGT
TTCAAAGGAAGTGCTCACCTTTGGAACCAGTGTTAACCCTTGGAGATTGTGCCAAAGAAC
ACCTCCACTTCCACCTCTGCCTCCACCTCCACGATGGACATGCAGATCCCACATGGTGCT
ATGCAAAGACCACAGAAGCAGAGCTACACTGTGACAGGAAGATACTGTGTGCCCCCTTGG
TCTCTGACCGGATCTTCCAGAACCTGGTGAGACATAGTAA..........

Sequence Detail Report

Gene Symbol (Gene ID) Rorb (ENSMUSG00000036192)
Transcript ID ENSMUST00000040153
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 471 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
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