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Target CDS Information

Gene Symbol (Gene ID) Trpm6 (ENSMUSG00000024727)
Cross Reference
CCDS CCDS29691.1
EMBL AY135644
GO GO:0004674, GO:0005261, GO:0005262, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005623, ...show all
MGI_trans_name Trpm6-201
protein_id AAN15217.1
Reactome R-MMU-2672351, R-MMU-3295583, R-MMU-382551, ...show all
RefSeq_mRNA NM_153417.1
RefSeq_mRNA_predicted XM_006526951.2, XM_011247226.1, XM_011247227.1
RefSeq_peptide NP_700466
RefSeq_peptide_predicted XP_006527014.1, XP_011245528.1, XP_011245529.1
UCSC uc008gya.1
UniParc UPI0000027E68
Uniprot/SWISSPROT Q8CIR4
Definition protein_id:ENSMUSP00000037443
translation:
MQVKKSWIEGVFYKRECNKFIPSSKDPHRCTPGCQICHNLVRCYCGRLIEEHHGLDRAWN
LSVTEGHGDEQWSVEKHTVKSPTDTFGTINFQDGEHIHHSKYIRTSWDTKSDHLLHLMLK
EWNMELPKLVISVHGGLQNFKISSKLKETFSQGLVKAAETTGAWIITEGINSGVSKHVGD
ALKAHSSKSLRKIWTVGIPPWGVIENQRELVGKDVVCMYQTLGNPLSKLTTLNCMHSHFI
LCDDGTVGMYGNEEKLRRNLEKHLSMQKIHTCSRQGVPVVGLVMEGGPNVILWVWETVKN
KEPVVVCEGTGRAADLLAFTYKHLEDGGILRPQVKEELFCLIQNMFNFSLRQSKHLFQIL
MECMVHKDSITIFDADSEEHQDLDLAILTALLKGTSLSISEQLNLAMAWDRMDIAKKHIL
TYGQHWKPGALEQAMLDALVMDRVDFVKLLIENGVNLHRFLTIPRLEELYNTKQGPTNKF
LRHLVQDVKQHTLLSSYRITLIDIGLVIEYLIGGAYRSSYTRKSFRILYNNLYRKHKSVS
SFAQGLSQHSLHQRHSLRNRKESSESTLHSQFFRTAQPYKSKEKPEDSQKSKKKSKERQS
LSEEPEAAGFIYPYNDLLVWAVLMKRQNMAMFFWQHGEEATVKAVIASILYRAMAREAKE
SNMVDDTSEELKNYSEQFGQLALDVLEKAFKQNEPMAMKLLTYELKNWSNSTCLKLAVSG
GLRPFVSHSCTQMLLTDMWMGRLKMRKNSWLKIIISILLPPMILTLEFKSKAEMSHVPQS
QDFQFTWNYSDQGLSNTKESACVKDYDLERGPDEKPDEPLHLDLRNVPQSLPWTRRVYEF
YSAPFVKFWFYTMAYLAFLMLFTYTVLVEMQPQPSVHEWLVIIYIFTNAIEKVREICISE
PSKFKQKVKMWLSEYWNLMETVAIGLFAVGFGLRWGHPPLQTAGRLIYCIDIIFWFSRLM
DFFAVNQHAGPYVTMIAKMAANMFYIVIIMAIVLLSFGVARKAILSPKEPPSWRLARDIV
FEPYWMMYGEVYASDIDVCSNETSCPPGSFLTPFLQAVYLFVQYIIMVNLLIACFNNIYL
DIKSISNKLWKYNRYRYIMTYHQKPWLPPPFILLNHLCLLLRGLCCRPAPQDQEEGDGGL
KLYLTKDDLKKLHDFEEQCVEKYFHEKTEGLNCSFEEQIRMTSERVSEMFFQLKEMNEKV
SFIKDSLLSLDSQVGHLQDLSAITVDTLKVLSAVDTLQEDEILLANRKHSTCRKRPHSWT
NVICAKVLSDMESCGKKKLQYYSMPPSLLRSLARSQLPPSVQRGALVEVTHSKREASHVR
EEQEEREMEQRTTASGISHVRQAHSKYGQFLLVPSSGKQVPLSLETPPHLFRSSEEAGID
GLVLEHIHQSDLTTHLPQQTPAASHQALVAEHKDQHEAVTQMSDKPAKAEQDLLAFSGTP
APMTVTSLPSRAISMQDEGGYVNWAFSENDETGVFSFKKKWKTCLASTCNSDSNPGGDYF
LHTGGRSGLDNSRRLAQSCECPAGPWTQARRSFWINPLCRDKALIKSHSFRFHKEEKLRK
TWKNNSHSKSLETRSTWLKAKLLTKTRSLSKKKRKTQGLQVPVITVNACYQSDQLNAEPG
ETNTTEEFSKKWLSVSNFSQIGLEPYIYQKMKMKEIKRHTTQASDHLRQPQENRDKTPTW
NSGSTSLSRSFLTRSPNEVHKISTSLKSPQEPHHHYSAIERNNLMRLSQTIPFTPIQLFT
GEEVTIYKLEESSPLTLDKSMSSWSQHGRAAMIQVLSQEEMDGGLRKAMRVISTWSEDDV
LKPGQVFIVKSFLPEVVQTWYKIFQESTVLHLCLREIQQQRAAQKLIYTFNQVKPQTIPY
TPRFLEVSLVYCHSANQWLTIEKYMTGEFRKYNNNNGDEIAPTNTLEELMLAFSHWTYEY
TRGELLVLDLQGVGENLTDPSVIKPEDKQSRGMVFGPANLGEDAIRSFIAKHRCNSCCGK
LRLPDLKRNDYSLSRTHCNLGFGQTIEPTEELPERDKNRSSLEDHTRL

Chromosome 19
Length
Position(start - end)
142,105
18,750,031 - 18,892,137
Orient to Chromosome plus
Link Location : (19:18750031-18892137)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Trpm6 (ENSMUSG00000024727)
Transcript ID ENSMUST00000040489
Reports
substitution
cSNPs41
Insertion93
Deletion137
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num28
non-synonymous num13
synonymous substitutions 18772347 (p.Tyr13Tyr), 18778652 (p.Phe86Phe), 18783225 (p.Ala163Ala), 18809669 (p.His536His), 18815364 (p.Ala717Ala), 18815367 (p.Val718Val), 18815418 (p.Leu735Leu), 18823455 (p.Pro844Pro), 18827493 (p.Gly936Gly), 18827598 (p.Pro971Pro), 18832595 (p.Cys1118Cys), 18832598 (p.Leu1119Leu), 18837980 (p.Tyr1143Tyr), 18853615 (p.Tyr1281Tyr), 18853771 (p.Thr1333Thr), 18853831 (p.Val1353Val), 18854002 (p.Ala1410Ala), 18854134 (p.Ser1454Ser), 18854242 (p.Asn1490Asn), 18862191 (p.Cys1609Cys), 18866277 (p.Arg1668Arg), 18867983 (p.Ser1682Ser), 18875882 (p.Leu1755Leu), 18876005 (p.Ser1796Ser), 18877609 (p.Gln1877Gln), 18877654 (p.Tyr1892Tyr), 18877690 (p.Asn1904Asn), 18892035 (p.Arg1995Arg),
non-synonymous substitutions 18778594 (p.His67Arg), 18813399 (p.Gln599His), 18819189 (p.Val803Ala), 18823370 (p.Pro816Leu), 18832650 (p.Asp1137Tyr), 18838092 (p.Met1181Val), 18853439 (p.Ile1223Leu), 18853694 (p.Glu1308Lys), 18853920 (p.Val1383Ala), 18853953 (p.Thr1394Ile), 18854357 (p.Ala1529Thr), 18892034 (p.Arg1995Lys), 18892075 (p.Thr2009Ala),
B6 transcript
(ENSMUST00000040489)
MQVKKSWIEGVFYKRECNKFIPSSKDPHRCTPGCQICHNLVRCYCGRLIEEHHGLDRAWN
LSVTEGHGDEQWSVEKHTVKSPTDTFGTINFQDGEHIHHSKYIRTSWDTKSDHLLHLMLK
EWNMELPKLVISVHGGLQNFKISSKLKETFSQGLVKAAETTGAWIITEGINSGVSKHVGD
ALKAHSSKSLRKIWTVGIPPWGVIENQRELVGKDVVCMYQTLGNPLSKLTTLNCMHSHFI
LCDDGTVGMYGNEEKLRRNLEKHLSMQKIHTCSRQGVPVVGLVMEGGPNVILWVWETVKN
KEPVVVCEGTGRAADLLAFTYKHLEDGGILRPQVKEELFCLIQNMFNFSLRQSKHLFQIL
MECMVHKDSITIFDADSEEHQDLDLAILTALLKGTSLSISEQLNLAMAWDRMDIAKKHIL
TYGQHWKPGALEQAMLDALVMDRVDFVKLLIENGVNLHRFLTIPRLEELYNTKQGPTNKF
LRHLVQDVKQHTLLSSYRITLIDIGLVIEYLIGGAYRSSYTRKSFRILYNNLYRKHKSVS
SFAQGLSQHSLHQRHSLRNRKESSESTLHSQFFRTAQPYKSKEKPEDSQKSKKKSKERQS
LSEEPEAAGFIYPYNDLLVWAVLMKRQNMAMFFWQHGEEATVKAVIASILYRAMAREAKE
SNMVDDTSEELKNYSEQFGQLALDVLEKAFKQNEPMAMKLLTYELKNWSNSTCLKLAVSG
GLRPFVSHSCTQMLLTDMWMGRLKMRKNSWLKIIISILLPPMILTLEFKSKAEMSHVPQS
QDFQFTWNYSDQGLSNTKESACVKDYDLERGPDEKPDEPLHLDLRNVPQSLPWTRRVYEF
YSAPFVKFWFYTMAYLAFLMLFTYTVLVEMQPQPSVHEWLVIIYIFTNAIEKVREICISE
PSKFKQKVKMWLSEYWNLMETVAIGLFAVGFGLRWGHPPLQTAGRLIYCIDIIFWFSRLM
DFFAVNQHAGPYVTMIAKMAANMFYIVIIMAIVLLSFGVARKAILSPKEPPSWRLARDIV
FEPYWMMYGEVYASDIDVCSNETSCPPGSFLTPFLQAVYLFVQYIIMVNLLIACFNNIYL
DIKSISNKLWKYNRYRYIMTYHQKPWLPPPFILLNHLCLLLRGLCCRPAPQDQEEGDGGL
KLYLTKDDLKKLHDFEEQCVEKYFHEKTEGLNCSFEEQIRMTSERVSEMFFQLKEMNEKV
SFIKDSLLSLDSQVGHLQDLSAITVDTLKVLSAVDTLQEDEILLANRKHSTCRKRPHSWT
NVICAKVLSDMESCGKKKLQYYSMPPSLLRSLARSQLPPSVQRGALVEVTHSKREASHVR
EEQEEREMEQRTTASGISHVRQAHSKYGQFLLVPSSGKQVPLSLETPPHLFRSSEEAGID
GLVLEHIHQSDLTTHLPQQTPAASHQALVAEHKDQHEAVTQMSDKPAKAEQDLLAFSGTP
APMTVTSLPSRAISMQDEGGYVNWAFSENDETGVFSFKKKWKTCLASTCNSDSNPGGDYF
LHTGGRSGLDNSRRLAQSCECPAGPWTQARRSFWINPLCRDKALIKSHSFRFHKEEKLRK
TWKNNSHSKSLETRSTWLKAKLLTKTRSLSKKKRKTQGLQVPVITVNACYQSDQLNAEPG
ETNTTEEFSKKWLSVSNFSQIGLEPYIYQKMKMKEIKRHTTQASDHLRQPQENRDKTPTW
NSGSTSLSRSFLTRSPNEVHKISTSLKSPQEPHHHYSAIERNNLMRLSQTIPFTPIQLFT
GEEVTIYKLEESSPLTLDKSMSSWSQHGRAAMIQVLSQEEMDGGLRKAMRVISTWSEDDV
LKPGQVFIVKSFLPEVVQTWYKIFQESTVLHLCLREIQQQRAAQKLIYTFNQVKPQTIPY
TPRFLEVSLVYCHSANQWLTIEKYMTGEFRKYNNNNGDEIAPTNTLEELMLAFSHWTYEY
TRGELLVLDLQGVGENLTDPSVIKPEDKQSRGMVFGPANLGEDAIRSFIAKHRCNSCCGK
LRLPDLKRNDYSLSRTHCNLGFGQTIEPTEELPERDKNRSSLEDHTRL*
MSMv4 transcript
MQVKKSWIEGVFYKRECNKFIPSSKDPHRCTPGCQICHNLVRCYCGRLIEEHHGLDRAWN
LSVTEGRGDEQWSVEKHTVKSPTDTFGTINFQDGEHIHHSKYIRTSWDTKSDHLLHLMLK
EWNMELPKLVISVHGGLQNFKISSKLKETFSQGLVKAAETTGAWIITEGINSGVSKHVGD
ALKAHSSKSLRKIWTVGIPPWGVIENQRELVGKDVVCMYQTLGNPLSKLTTLNCMHSHFI
LCDDGTVGMYGNEEKLRRNLEKHLSMQKIHTCSRQGVPVVGLVMEGGPNVILWVWETVKN
KEPVVVCEGTGRAADLLAFTYKHLEDGGILRPQVKEELFCLIQNMFNFSLRQSKHLFQIL
MECMVHKDSITIFDADSEEHQDLDLAILTALLKGTSLSISEQLNLAMAWDRMDIAKKHIL
TYGQHWKPGALEQAMLDALVMDRVDFVKLLIENGVNLHRFLTIPRLEELYNTKQGPTNKF
LRHLVQDVKQHTLLSSYRITLIDIGLVIEYLIGGAYRSSYTRKSFRILYNNLYRKHKSVS
SFAQGLSQHSLHQRHSLRNRKESSESTLHSQFFRTAQPYKSKEKPEDSQKSKKKSKERHS
LSEEPEAAGFIYPYNDLLVWAVLMKRQNMAMFFWQHGEEATVKAVIASILYRAMAREAKE
SNMVDDTSEELKNYSEQFGQLALDVLEKAFKQNEPMAMKLLTYELKNWSNSTCLKLAVSG
GLRPFVSHSCTQMLLTDMWMGRLKMRKNSWLKIIISILLPPMILTLEFKSKAEMSHVPQS
QDFQFTWNYSDQGLSNTKESACAKDYDLERGPDEKLDEPLHLDLRNVPQSLPWTRRVYEF
YSAPFVKFWFYTMAYLAFLMLFTYTVLVEMQPQPSVHEWLVIIYIFTNAIEKVREICISE
PSKFKQKVKMWLSEYWNLMETVAIGLFAVGFGLRWGHPPLQTAGRLIYCIDIIFWFSRLM
DFFAVNQHAGPYVTMIAKMAANMFYIVIIMAIVLLSFGVARKAILSPKEPPSWRLARDIV
FEPYWMMYGEVYASDIDVCSNETSCPPGSFLTPFLQAVYLFVQYIIMVNLLIACFNNIYL
DIKSISNKLWKYNRYRYIMTYHQKPWLPPPFILLNHLCLLLRGLCCRPAPQDQEEGYGGL
KLYLTKDDLKKLHDFEEQCVEKYFHEKTEGLNCSFEEQIRVTSERVSEMFFQLKEMNEKV
SFIKDSLLSLDSQVGHLQDLSALTVDTLKVLSAVDTLQEDEILLANRKHSTCRKRPHSWT
NVICAKVLSDMESCGKKKLQYYSMPPSLLRSLARSQLPPSVQRGALVKVTHSKREASHVR
EEQEEREMEQRTTASGISHVRQAHSKYGQFLLVPSSGKQVPLSLETPPHLFRSSEEAGID
GLALEHIHQSDLTIHLPQQTPAASHQALVAEHKDQHEAVTQMSDKPAKAEQDLLAFSGTP
APMTVTSLPSRAISMQDEGGYVNWAFSENDETGVFSFKKKWKTCLASTCNSDSNPGGDYF
LHTGGRSGLDNSRRLAQSCECPAGPWTQTRRSFWINPLCRDKALIKSHSFRFHKEEKLRK
TWKNNSHSKSLETRSTWLKAKLLTKTRSLSKKKRKTQGLQVPVITVNACYQSDQLNAEPG
ETNTTEEFSKKWLSVSNFSQIGLEPYIYQKMKMKEIKRHTTQASDHLRQPQENRDKTPTW
NSGSTSLSRSFLTRSPNEVHKISTSLKSPQEPHHHYSAIERNNLMRLSQTIPFTPIQLFT
GEEVTIYKLEESSPLTLDKSMSSWSQHGRAAMIQVLSQEEMDGGLRKAMRVISTWSEDDV
LKPGQVFIVKSFLPEVVQTWYKIFQESTVLHLCLREIQQQRAAQKLIYTFNQVKPQTIPY
TPRFLEVSLVYCHSANQWLTIEKYMTGEFRKYNNNNGDEIAPTNTLEELMLAFSHWTYEY
TRGELLVLDLQGVGENLTDPSVIKPEDKQSRGMVFGPANLGEDAIRSFIAKHRCNSCCGK
LRLPDLKRNDYSLSKTHCNLGFGQTIEPAEELPERDKNRSSLEDHTRL*
homology99.36 (2029 / 2029)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Trpm6 (ENSMUSG00000024727)
Transcript ID ENSMUST00000040489
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TATGATACTTCTTTTTTTTTTTTTAAAGACTTATTTATTTATTATATGTA
AGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAGTCAGATCTCATTATGGATGG
TTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCGGACCTTCAGAGGAGGAGCAGTC
GGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCGTATGATACTTCATAAATAAAGCA
AGGTCACTGTCTTTGTTCAGTGTAGTCTCTGTGAGGAAGGTGGGTTTTCTTTATTATTCT
CTCTGTATAGGTAAGTAAACTGAGGCCCCCAAGAGTCTCTCGTCATGCTCAGCAACTCAT
GGGCGTTTCAGAAACACAGAGAACGTAAACCGACCGTCTCCTCACCTAAAGCTCTGACCC
AAGAATCTAAAATTTGTCTGATGACAGTGACCATACCTGATCAGCAGCCAAACTTCTTTG
GAGTCATGTCTTTCCTACAGAGGCGTTAACAGAGCCCAACAGGCATTGTGAAAACTCCTC
AGGGCTGTAAAAGACAGCGTCCATGTGCAGGTGGAGCCCAGATTGACTCCACAGTCAAAA
GCTCAGACCTTGTTTTGGTTGCTGGCCTGGAAAAATCTAGGATGAAAGCCGGACCTGCAG
CTGAGTGCTCTCCTATGCACAGGGGTCAGGCCCAGGGCCCCAGGTGGCAGTGGGTGGAGT
CAGGCGCACGCGTATCTAACTGCGATCTCGAATAGGTAGGATTTGCGAAATGCTAGCTTT
CAAGTCCTCTAGTCTCCACCCGAACATGATTATCGTAGCTGAGGTTTTGGCAACCGCGTG
GACCCTTCCGAAGGGCAGGACCCGCAGTCTTTCTTCCGGGAGTTGGGACCGGCCTGGAGC
TGGGTCAGGGCCGAGCGGAAACCGAACCCAGGGTCGAGGCGGCAGGGCGCGCGTGTGAGT
CCCGGACTCCGGAGTCCGAGTCCAGGAGGAATCGAGTCCTGGGAGGTGTC
1 EXON 1 18,749,983 18,750,042 - 0 60
CCGGACGAGGAGGAATTCGCTGTCGCTTCGGCTCCTGTGGTGGTGAGAATGCAGGTCAAG
INTRON 1 - 2 18,750,043 18,772,320 22,278
GTAAAAAGTTGGGCCTGAAGATGTT..........CAGGTTATGTTTTGCTCTGTTTCAG
2 EXON 2 18,772,321 18,772,394 0 2 74
AAATCCTGGATCGAAGGGGTATTCTATAAGAGAGAGTGTAACAAATTCATACCCAGCTCA
AAAGACCCTCACAG
INTRON 2 - 3 18,772,395 18,776,692 4,298
GTACAGTTTTTAATTATATTCTTTT..........CAATAACTTTATTTCTTTGACTCAG
3 EXON 3 18,776,693 18,776,731 2 2 39
ATGCACTCCAGGCTGCCAAATCTGCCACAATTTAGTCAG
INTRON 3 - 4 18,776,732 18,778,519 1,788
GTGAGACTTTCTGAAAAATCTGATT..........GAGTGACTTGTTTTCTGGAGTCTAG
4 EXON 4 18,778,520 18,778,697 2 0 178
GTGTTACTGTGGCCGGCTGATTGAAGAACACCATGGGCTGGATCGTGCCTGGAACCTCTC
AGTCACTGAGGGCCGTGGGGATGAGCAGTGGTCTGTGGAGAAGCACACAGTGAAAAGCCC
TACAGATACCTTTGGCACCATTAATTTCCAAGATGGAGAACATATCCACCACTCCAAG
INTRON 4 - 5 18,778,698 18,783,039 4,342
GTTTGCTGATAACCCAAACCATCTC..........TCGTGGGTCTGTGCTGCCCTTCCAG
5 EXON 5 18,783,040 18,783,253 0 1 214
TACATTAGAACTTCTTGGGATACAAAATCGGATCATCTGTTGCACTTAATGCTGAAAGAG
TGGAATATGGAACTGCCAAAGCTTGTGATCTCCGTCCATGGGGGTCTTCAGAACTTCAAG
ATATCCTCCAAGCTCAAAGAGACCTTCAGCCAGGGTCTGGTCAAAGCTGCAGAGACCACA
GGAGCGTGGATAATTACAGAAGGCATAAACTCAG
INTRON 5 - 6 18,783,254 18,783,773 520
GTAAAGCTCGTGCCTGATTCCCGTC..........ATTAAATTCTACCCTGGTTTCATAG
6 EXON 6 18,783,774 18,783,898 1 0 125
GAGTGTCCAAGCACGTTGGGGATGCCCTAAAAGCCCATTCCTCTAAGTCTTTGAGGAAAA
TCTGGACAGTTGGAATCCCTCCTTGGGGAGTCATTGAGAACCAGAGAGAGCTGGTCGGAA
AAGAT
INTRON 6 - 7 18,783,899 18,786,673 2,775
GTGAGTAGACAATCCTTTCCATCGG..........CCCTCTTGTCCTTGCTGTGTCTCAG
7 EXON 7 18,786,674 18,786,845 0 1 172
GTGGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTCACCACGCTAAACTGT
ATGCACTCTCACTTCATCCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAG
AAGCTCAGGCGGAACCTGGAGAAGCATCTCTCAATGCAGAAGATACACACTT
INTRON 7 - 8 18,786,846 18,791,985 5,140
GTAAGTGGTGTCAGAGCTCAGCCTC..........TGGTACTATTTGCCATCTGAAACAG
8 EXON 8 18,791,986 18,792,154 1 2 169
GCTCAAGACAAGGTGTGCCTGTGGTGGGGCTGGTGATGGAAGGAGGTCCCAATGTCATCC
TCTGGGTATGGGAGACCGTCAAGAACAAGGAGCCCGTGGTGGTGTGCGAGGGGACAGGCA
GAGCTGCTGACCTCTTGGCCTTCACTTACAAACATTTGGAGGATGGAGG
INTRON 8 - 9 18,792,155 18,792,835 681
GTGAGTTGTTGAGCCCTCTATTTTG..........CTATGCCTGTTTATTTCTCTGCCAG
9 EXON 9 18,792,836 18,792,959 2 0 124
GATTCTACGCCCTCAGGTGAAAGAAGAGCTCTTCTGTTTGATTCAGAACATGTTCAACTT
TAGCCTTAGACAGTCTAAGCACCTTTTCCAAATTCTAATGGAGTGCATGGTACACAAGGA
TTCT
INTRON 9 - 10 18,792,960 18,796,252 3,293
GTAAGTATGATGAGTTGATGACTTT..........CCTTTCTGATTTTTCCCCATCACAG
10 EXON 10 18,796,253 18,796,325 0 1 73
ATCACCATATTTGATGCTGATTCTGAAGAGCACCAAGATCTTGATTTGGCCATCCTCACG
GCTCTACTGAAGG
INTRON 10 - 11 18,796,326 18,796,440 115
GTGAGTGACCTAGCAGATCTGCAGT..........AGATTATTCCTTTCTTTCCCCCTAG
11 EXON 11 18,796,441 18,796,541 1 0 101
GTACAAGCTTATCAATATCAGAACAATTAAATCTGGCAATGGCTTGGGATAGAATGGACA
TTGCCAAGAAACATATCCTAACTTATGGACAACATTGGAAG
INTRON 11 - 12 18,796,542 18,800,934 4,393
GTATAATGAAAATGACATTACTTGA..........TCTTCCTTCTTTGTACCTCCCAAAG
12 EXON 12 18,800,935 18,801,069 0 0 135
CCTGGTGCTCTAGAACAAGCAATGCTAGATGCTTTAGTGATGGATCGAGTGGACTTTGTG
AAACTTTTGATAGAGAATGGGGTGAACCTCCACCGCTTCCTCACCATCCCTCGGCTGGAA
GAGCTCTATAACACA
INTRON 12 - 13 18,801,070 18,802,148 1,079
GTGAGTATGGAATACTTCATGTCAA..........CTTTTTCTTCTGTTTTTAATCACAG
13 EXON 13 18,802,149 18,802,202 0 0 54
AAACAAGGACCAACTAATAAATTTTTGCGTCATCTTGTCCAAGACGTAAAGCAG
INTRON 13 - 14 18,802,203 18,809,531 7,329
GTAATCTAACTATGAAAGTTGAAAA..........TGTGACTTCATTTTCTTTTTTACAG
14 EXON 14 18,809,532 18,809,672 0 0 141
CACACCCTTCTCTCGAGCTATAGAATAACACTCATTGACATTGGGCTGGTAATAGAGTAC
CTCATTGGTGGAGCATATCGGAGCAGCTACACTAGGAAAAGTTTCAGAATTCTCTACAAC
AACCTCTACAGAAAACATAAG
INTRON 14 - 15 18,809,673 18,811,678 2,006
GTAAGGCAAATCTTTGGAAAGTACT..........TAAACAAAATGACAATATATACCAG
15 EXON 15 18,811,679 18,811,813 0 0 135
AGTGTGAGCAGCTTTGCTCAGGGCCTCTCCCAGCACTCTCTTCATCAGAGACATTCACTG
AGAAATAGAAAGGAGTCTTCTGAAAGCACACTGCACTCCCAGTTCTTCAGGACGGCCCAG
CCCTACAAATCCAAG
INTRON 15 - 16 18,811,814 18,813,348 1,535
GTACTCTCCTTTGTTGGTAGAGTTG..........AGGACTTTGTTTTCCTTTGCAATAG
16 EXON 16 18,813,349 18,813,629 0 2 281
GAGAAGCCTGAGGACTCTCAAAAATCAAAGAAGAAGTCCAAGGAAAGACACAGCCTGTCA
GAGGAACCCGAGGCTGCTGGCTTTATCTACCCATACAATGACCTTCTGGTGTGGGCGGTG
CTCATGAAGAGGCAGAATATGGCCATGTTCTTCTGGCAGCATGGAGAGGAGGCCACAGTC
AAGGCGGTCATTGCTAGTATCCTCTACAGAGCCATGGCCCGGGAAGCCAAGGAGAGCAAC
ATGGTGGATGACACTTCAGAAGAGTTGAAAAATTACTCAGA
INTRON 16 - 17 18,813,630 18,815,240 1,611
GTAGGTCTTCTCTCTTCACACTAAA..........CTCTTCGCCTCCCCCGTGTCACCAG
17 EXON 17 18,815,241 18,815,469 2 0 229
GCAGTTTGGCCAGCTCGCCCTGGATGTATTAGAGAAAGCCTTCAAGCAGAACGAGCCGAT
GGCCATGAAGCTGCTGACCTATGAGCTCAAGAATTGGAGTAATTCCACCTGCTTGAAACT
GGCAGTGTCTGGAGGTCTGCGCCCTTTTGTGTCGCATTCTTGTACCCAAATGCTGCTGAC
AGACATGTGGATGGGGCGTCTGAAAATGAGAAAAAATTCCTGGCTGAAG
INTRON 17 - 18 18,815,470 18,819,037 3,568
GTACACTCTCTTGCCCTATGTCCTG..........ATCCTTTATCTGGTTCTCTTTGTAG
18 EXON 18 18,819,038 18,819,190 0 0 153
ATAATCATCAGTATCCTCTTACCACCCATGATTTTGACATTGGAATTTAAAAGCAAAGCA
GAGATGTCACATGTCCCACAGTCCCAGGATTTCCAGTTTACATGGAATTACAGTGACCAG
GGCCTGAGTAACACCAAAGAAAGTGCTTGTGCG
INTRON 18 - 19 18,819,191 18,823,332 4,142
GTGAGTACCCTACCATAGGAAACTG..........TACAAGATTGTTGCTTAATTTTCAG
19 EXON 19 18,823,333 18,823,479 0 0 147
AAAGACTATGATTTGGAAAGAGGCCCTGATGAGAAACTGGATGAACCTCTGCATTTAGAC
TTAAGAAATGTGCCCCAGAGCCTCCCCTGGACCCGGAGAGTCTACGAGTTCTACAGCGCT
CCATTTGTCAAGTTTTGGTTCTACACG
INTRON 19 - 20 18,823,480 18,825,750 2,271
GTTGGTCGCAGTACAATAGTGTTGA..........TCCAGGGAATGTGTGTCCCTCACAG
20 EXON 20 18,825,751 18,825,879 0 0 129
ATGGCTTATTTGGCATTCCTCATGCTGTTCACTTACACAGTGTTGGTGGAGATGCAGCCC
CAACCCAGCGTGCACGAATGGCTTGTCATCATCTACATCTTCACCAATGCTATTGAGAAG
GTCAGGGAG
INTRON 20 - 21 18,825,880 18,827,370 1,491
GTGAGTGGTCCTTTGAACTGTGTCT..........TCTCTCTCTCTCTCTCTCCAATTAG
21 EXON 21 18,827,371 18,827,622 0 0 252
ATCTGCATTTCAGAACCAAGCAAGTTTAAGCAGAAGGTGAAGATGTGGCTCAGTGAGTAC
TGGAACCTCATGGAAACTGTGGCTATTGGCCTGTTTGCTGTTGGCTTTGGCCTACGGTGG
GGACATCCACCTTTGCAAACTGCAGGGAGACTCATCTACTGCATAGACATCATATTTTGG
TTTTCTCGGCTCATGGACTTCTTTGCTGTGAATCAACATGCAGGTCCGTATGTGACCATG
ATTGCCAAAATG
INTRON 21 - 22 18,827,623 18,829,830 2,208
GTGAGTGCACCCTCACTTTAAACAC..........GTTGTTGTGCTGTGCTGTTTTGCAG
22 EXON 22 18,829,831 18,830,005 0 1 175
GCAGCAAACATGTTCTACATTGTGATCATCATGGCCATTGTCCTGCTGAGCTTTGGCGTG
GCGCGCAAAGCTATCCTCTCACCGAAGGAGCCTCCTTCATGGCGCCTGGCTCGTGACATC
GTCTTTGAGCCGTATTGGATGATGTATGGAGAAGTCTATGCTTCAGATATAGATG
INTRON 22 - 23 18,830,006 18,830,204 199
GTACATATGAGGCTTTGCCTTCACT..........TCACTTTTAAATTCTTTCTTTGTAG
23 EXON 23 18,830,205 18,830,319 1 2 115
TTTGTTCAAATGAGACTTCTTGCCCTCCGGGTTCTTTCCTGACTCCATTCCTGCAAGCTG
TCTACCTCTTTGTGCAATACATCATCATGGTGAACCTTCTGATTGCCTGTTTCAA
INTRON 23 - 24 18,830,320 18,832,468 2,149
GTAGGTAACTTTGATGAAATACAAT..........CTCTCTCTCTCTCTTCCACCTACAG
24 EXON 24 18,832,469 18,832,662 2 1 194
CAACATTTACTTAGATATAAAATCCATCTCGAACAAGCTCTGGAAATACAACCGCTATCG
CTACATCATGACCTACCACCAGAAGCCCTGGCTGCCTCCTCCCTTTATCCTGCTGAATCA
CCTGTGCCTGCTCCTCCGAGGTCTGTGCTGTCGCCCAGCCCCACAGGACCAGGAAGAGGG
GTACGGAGGGCTAA
INTRON 24 - 25 18,832,663 18,837,972 5,310
GTAAGTTTCTCTGAAGGAACAGAAG..........ATATGTGTCATGCTTATTTCCACAG
25 EXON 25 18,837,973 18,838,105 1 2 133
AGCTCTACCTCACTAAGGATGACTTGAAAAAGCTTCATGATTTTGAAGAGCAGTGTGTGG
AAAAATATTTCCACGAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAG
TGACATCAGAAAG
INTRON 25 - 26 18,838,106 18,853,326 15,221
GTAAAGAATATCTCTTTAATCCCTA..........ATGTTTTTCGTATCTTCACCATTAG
26 EXON 26 18,853,327 18,854,468 2 1 1,142
GGTATCAGAGATGTTTTTCCAACTGAAAGAAATGAATGAAAAAGTATCTTTTATAAAGGA
CTCCCTACTATCCCTGGACAGCCAGGTGGGACACCTTCAGGACCTCTCGGCCCTAACTGT
TGACACCTTAAAGGTCCTTTCTGCTGTTGACACCTTGCAAGAAGATGAGATTCTTTTGGC
CAACAGAAAGCATTCTACTTGCAGAAAACGTCCCCACAGCTGGACCAATGTCATCTGTGC
AAAGGTTCTAAGTGACATGGAAAGCTGTGGGAAGAAGAAACTTCAGTACTATAGCATGCC
CCCTTCTTTGCTGAGGAGCCTCGCTAGAAGTCAGCTTCCCCCAAGTGTGCAGAGGGGTGC
ACTTGTAAAGGTTACGCACAGTAAGAGAGAGGCCTCACATGTAAGAGAAGAGCAGGAGGA
ACGAGAAATGGAACAGAGGACAACCGCTTCTGGGATTTCCCATGTCAGACAAGCACACTC
TAAGTATGGCCAGTTTCTCCTGGTCCCATCTTCTGGAAAGCAAGTTCCTTTGTCTTTGGA
AACCCCGCCACATCTTTTCAGATCATCTGAGGAGGCAGGTATAGATGGTCTGGCATTGGA
GCATATACACCAAAGTGATCTCACCATCCACTTGCCTCAGCAGACCCCTGCTGCCTCCCA
CCAGGCATTGGTAGCTGAACACAAAGACCAACATGAGGCAGTTACACAGATGTCAGACAA
ACCTGCCAAGGCAGAACAAGACTTGCTCGCATTCAGTGGCACACCTGCTCCCATGACAGT
GACTTCTCTTCCTTCGAGAGCCATCAGTATGCAAGATGAAGGTGGATATGTAAACTGGGC
ATTTTCAGAAAATGATGAAACAGGTGTGTTTAGCTTTAAAAAAAAGTGGAAAACTTGCTT
GGCCTCCACTTGCAACAGTGACTCCAATCCTGGTGGAGACTACTTCCTGCACACTGGAGG
TAGATCCGGACTGGATAACTCAAGAAGACTGGCCCAGAGTTGTGAGTGCCCAGCAGGACC
GTGGACCCAGACAAGAAGATCCTTTTGGATCAATCCTCTCTGCAGAGATAAAGCTCTCAT
TAAGAGTCATAGTTTTAGATTCCACAAGGAGGAGAAACTGAGGAAGACCTGGAAGAACAA
CA
INTRON 26 - 27 18,854,469 18,856,154 1,686
GTAAGGAACAAATGTTTTAAATTTA..........CCTCATGCATGCTCTTTCTTTCCAG
27 EXON 27 18,856,155 18,856,264 1 0 110
GTCATTCAAAATCCTTAGAGACCAGGTCCACATGGCTCAAAGCAAAACTGCTAACCAAGA
CCCGGAGCCTGTCAAAGAAGAAGAGGAAGACCCAAGGGCTCCAGGTGCCG
INTRON 27 - 28 18,856,265 18,862,170 5,906
GTAAGGCCTCCTCCTACTGTACATC..........TTTGACCAAGTGACTTTCTTTCCAG
28 EXON 28 18,862,171 18,862,288 0 1 118
GTAATAACAGTCAATGCCTGTTATCAAAGTGACCAGTTGAATGCAGAGCCAGGAGAAACT
AACACCACTGAAGAGTTCAGCAAGAAATGGCTCTCTGTATCCAACTTCAGCCAGATAG
INTRON 28 - 29 18,862,289 18,866,197 3,909
GTATGTGATTATCTAGCCTTAGACC..........TAATTTCTCTTCTTTTAAAAACAAG
29 EXON 29 18,866,198 18,866,289 1 0 92
GTTTAGAGCCTTACATATACCAGAAAATGAAAATGAAGGAAATCAAGCGACATACTACAC
AAGCCAGTGACCACCTAAGACAGCCACAAGAG
INTRON 29 - 30 18,866,290 18,867,953 1,664
GTAAAAATAGTTTGATAGTTTTATA..........GTGATGTCTGTTCCCTTCTGCACAG
30 EXON 30 18,867,954 18,868,012 0 2 59
AACCGAGATAAAACCCCCACATGGAATTCCGGGAGCACCAGCCTCAGCAGGAGTTTTCT
INTRON 30 - 31 18,868,013 18,870,499 2,487
GTGAGTATTTCCATGTGACTTTTGG..........GCACTTTCATTTGTTCCCCAAACAG
31 EXON 31 18,870,500 18,870,525 2 1 26
AACAAGAAGTCCAAATGAAGTTCACA
INTRON 31 - 32 18,870,526 18,872,211 1,686
GTAAGTTTTTATATTTAAACATTTA..........ATGCCAATCATTTCTATGATTGCAG
32 EXON 32 18,872,212 18,872,262 1 1 51
AGATCTCAACCTCCTTAAAAAGCCCTCAAGAGCCTCACCACCATTATTCAG
INTRON 32 - 33 18,872,263 18,873,828 1,566
GTAGGAAGTGTGTGTGCACAGATGG..........GTAGTCAATCTGTTTTTGTTTGCAG
33 EXON 33 18,873,829 18,873,894 1 1 66
CCATTGAAAGGAATAATTTAATGAGACTGTCTCAGACCATACCGTTTACACCAATCCAGC
TGTTCA
INTRON 33 - 34 18,873,895 18,875,835 1,941
GTGAGTAACATCTCCCTCTTCTCGA..........AACTGGCTTTCACTTCTTATTGCAG
34 EXON 34 18,875,836 18,876,122 1 0 287
CAGGAGAGGAAGTGACCATCTACAAGCTTGAAGAAAGTTCTCCTCTCACCCTGGATAAGA
GCATGTCCTCTTGGTCGCAGCATGGCAGAGCTGCCATGATTCAGGTGCTGTCACAAGAGG
AAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTTATCAGCACCTGGTCCGAGGATGATG
TTCTCAAGCCTGGGCAGGTTTTCATTGTGAAGTCTTTTCTCCCCGAGGTTGTGCAGACGT
GGTATAAAATCTTCCAGGAGAGCACTGTGCTTCATCTTTGCCTTAGG
INTRON 34 - 35 18,876,123 18,876,752 630
GTAAGCCGGAACCTTAGATACCGAG..........TCTCTCTCTTTCTCTCTCTCTCAAG
35 EXON 35 18,876,753 18,876,835 0 2 83
GAAATTCAACAGCAAAGAGCTGCCCAAAAACTCATCTATACCTTTAACCAAGTAAAACCA
CAAACCATTCCCTATACACCAAG
INTRON 35 - 36 18,876,836 18,877,566 731
GTGAGTAAACCTGGCACTGTGGCTC..........CATTGGCTTCTTTTGTTCCTCACAG
36 EXON 36 18,877,567 18,877,772 2 1 206
GTTTCTCGAGGTTTCCTTGGTCTACTGCCATTCAGCCAACCAGTGGTTAACCATTGAGAA
GTACATGACAGGGGAGTTCCGGAAATATAATAACAACAATGGTGATGAAATAGCTCCCAC
CAACACCCTGGAAGAACTGATGTTGGCTTTCTCTCACTGGACCTATGAATATACCCGGGG
AGAGCTGCTGGTTTTAGATTTGCAAG
INTRON 36 - 37 18,877,773 18,883,899 6,127
GTAATTAATTGAAAATGTAGAGTTT..........AACGAATTTTGTTTCTTCTTTTGAG
37 EXON 37 18,883,900 18,883,951 1 2 52
GTGTTGGAGAAAATTTGACAGATCCGTCTGTTATAAAACCGGAAGACAAACA
INTRON 37 - 38 18,883,952 18,888,934 4,983
GTGAGTTGATTTATGTGTTATAATT..........ATTGATATTCTGATATTTCCTCTAG
38 EXON 38 18,888,935 18,889,041 2 1 107
ATCAAGAGGGATGGTGTTTGGACCGGCCAATTTAGGGGAAGATGCAATTAGAAGCTTCAT
TGCAAAACATCGCTGCAACTCCTGCTGTGGGAAGCTCAGACTGCCGG
INTRON 38 - 39 18,889,042 18,892,003 2,962
GTAAGCCGCCGCGGTGACTGTTTCT..........TGAAACTATCTTGCTTTCTTTGTAG
39 EXON 39 18,892,004 18,892,510 1 - 507
ATTTAAAAAGGAATGATTACTCCCTTTCAAAGACACACTGCAACTTGGGATTTGGGCAAA
CCATTGAACCAGCTGAGGAGCTTCCAGAAAGAGACAAAAATAGAAGTTCCCTGGAAGATC
ACACACGCCTTTAAAAAGATGATGAAGGAAGATGGTGGTCCTTTAGCTCCTTCTGCCATG
ACTTCTATAGTGATGGACATAGACTGACATGATCCTGACTATGTCAGAATCTCCATCACC
ATGACTTTACAATGTGGACCTCCCTGGAAGTGCCCTCTGAGCCTCATCTCCCACTGCCTA
GAGGGCACAGTGCATAATGGAGGGGTTCTCCTGGGTATTGACTTCTGAGAAGAATGTGTG
GCATGCATTCTCATCTCCCGGTTCTGCATGAAGATGCTAGATGAGTCAGTTGGGAATACT
TTCCTCTATACCTCATTGCTTCAGCTGGCCACTTGGAGTAGAATGCTGTGCACTAACGAA
CTAGGGAATAAATTAATTTATTTTCTC
3' upstream sequence
ACTGCGTTTGAAGACTTTGTCCTCACTGTTATTCATGATTTCATCCAAGGGTTGTACATA
TACCTACCTATACATATGTGTTTTCTTCTTCCCTCTTTAGCAATATAAGTTGTGAAAACA
ACAAAAACAACAGGGAAAATCCTGGGATGAGCATCTGTTGGCCAAGGCTGGAGCATCCAT
AGCCATAAAAAGGCCATGTCCTGGTGCACTCTAGATGTATTGGAGCATTGTTATCAAATC
ACATGATACTTGGAATTTTTCAGTTTCTCTGAATGAAACGAAAGTAGAATCCAAATCATT
TTTTTCTTACATCTTTTTATTTAAATAAGAAAACTGATGCGGGGCGGGGGGGGGGGATGT
AATCCTGGAAACTATTAAGAAAGGCTTCGCTTTATTAAGCTCAGAAACACTATGGCCAGA
GACCCTCACCAGTCTCTGTTCATACTTTTCCTCACAGTAATGTGTCATATCACATCTATG
TTCTCCTTGGCCAGTCCTGTAGGGGAAAGATACTGAACTGCATTGCAGGTATTTTGCTCC
TTCCATTGTAGAATTCTGACAACGAAGTCCTGAGAAATTTGACTTCTAGATGGGTCCTGT
ACCCTCCCTGTTCAAACAGAAGGCTTCGATTGGAATAAGAGAATTAGGGCAGATAAGAAG
ACATGCATATTCTAGCATCTTGGAGGGACAATGACGTACACAATTCTTTTCTAGGTGCAG
AGCCTTGGTCATGGGTGGGATGTGGATGTAAGAGTCTAAGGAGAAGGCGAGGTCAGGAAG
TTCTTGTGCAGGAATCTAGTGTTCAGGGACTTCTTTCCAAAGGCATTTATCTATCTCTAG
ATTCTGAGTGGCATCTATCCTTTGCTGTCTTAGAGCTCTTTGCAGCTCTTAGGCATGAGA
CTAGATATAATTTGGGGGTATTCCTTACTCTGTGGCTTTGCAAATCAAATGCTGGACAAT
CAGGAGTTCCCAACAACCATCCAGTCAGTGCATGGTTTTG..........

Sequence Detail Report

Gene Symbol (Gene ID) Trpm6 (ENSMUSG00000024727)
Transcript ID ENSMUST00000040489
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 2029 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information