MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Muc1 (ENSMUSG00000042784)

Cross Reference

CCDS	CCDS17496.1
GO	GO:0001666, GO:0001701, GO:0005737, ...show all
MGI_trans_name	Muc1-001
OTTP	OTTMUSP00000021969
OTTT	OTTMUST00000048120
RefSeq_mRNA	NM_013605.2
RefSeq_peptide	NP_038633
UCSC	uc008pyh.2
UniParc	UPI000002A11B
Vega_transcript	Muc1-001, OTTMUST00000048120

Vega_translation

187678, OTTMUSP00000021969

Definition

protein_id:ENSMUSP00000041963
translation:

MTPGIRAPFFLLLLLASLKGFLALPSEENSVTSSQDTSSSLASTTTPVHSSNSDPATRPP
GDSTSSPVQSSTSSPATRAPEDSTSTAVLSGTSSPATTAPVNSASSPVAHGDTSSPATSL
SKDSNSSPVVHSGTSSAPATTAPVDSTSSPVVHGGTSSPATSPPGDSTSSPDHSSTSSPA
TRAPEDSTSTAVLSGTSSPATTAPVDSTSSPVAHDDTSSPATSLSEDSASSPVAHGGTSS
PATSPLRDSTSSPVHSSASIQNIKTTSDLASTPDHNGTSVTTTSSALGSATSPDHSGTST
TTNSSESVLATTPVYSSMPFSTTKVTSGSAIIPDHNGSSVLPTSSVLGSATSLVYNTSAI
ATTPVSNGTQPSVPSQYPVSPTMATTSSHSTIASSSYYSTVPFSTFSSNSSPQLSVGVSF
FFLSFYIQNHPFNSSLEDPSSNYYQELKRNISGLFLQIFNGDFLGISSIKFRSGSVVVES
TVVFREGTFSASDVKSQLIQHKKEADDYNLTISEVKVNEMQFPPSAQSRPGVPGWGIALL
VLVCILVALAIVYFLALAVCQCRRKSYGQLDIFPTQDTYHPMSEYPTYHTHGRYVPPGST
KRSPYEEVSAGNGSSSLSYTNPAVVTTSANL

Chromosome

Length
Position(start - end)

3,977
89,229,120 - 89,233,098

Orient to Chromosome

plus

Link

Location : (3:89229120-89233098)
/

Detail Map

name	Mtx1 (ENSMUSG00000064068)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Mtx1 note : metaxin 1 [Source:MGI Symbol;Acc:MGI:103025]

name	Mir92b (ENSMUSG00000076255)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Mir92b note : microRNA 92b [Source:MGI Symbol;Acc:MGI:3718577]

name	Muc1 (ENSMUSG00000042784)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Muc1 note : mucin 1, transmembrane [Source:MGI Symbol;Acc:MGI:97231]

name	Trim46 (ENSMUSG00000042766)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Trim46 note : tripartite motif-containing 46 [Source:MGI Symbol;Acc:MGI:2673000]

name	Muc1 (ENSMUSG00000042784)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000041142

name	Trim46 (ENSMUSG00000042766)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000107464

name	Trim46 (ENSMUSG00000042766)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000090924

name	Trim46 (ENSMUSG00000042766)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000041022

name	Trim46 (ENSMUSG00000042766)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000143637

name	Muc1 (ENSMUSG00000042784) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS17496.1 RefSeq_peptide:NP_038633 RefSeq_mRNA:NM_013605.2 Vega_transcript:Muc1-001 Vega_transcript:OTTMUST00000048120 UCSC:uc008pyh.2 GO:GO:0001666 GO:GO:0001701 GO:GO:0005737 GO:GO:0005886 GO:GO:0007565 GO:GO:0016324 GO:GO:0030855 GO:GO:0071300 MGI_trans_name:Muc1-001 Vega_translation:187678 Vega_translation:OTTMUSP00000021969 OTTP:OTTMUSP00000021969 OTTT:OTTMUST00000048120 UniParc:UPI000002A11B
definition	note : transcript_id=ENSMUST00000041142 protein_id : ENSMUSP00000041963 translation : MTPGIRAPFFLLLLLASLKGFLALPSEENSVTSSQDTSSSLASTTTPVHSSNSDPATRPPGDSTSSPVQSSTSSPATRAPEDSTSTAVLSGTSSPATTAPVNSASSPVAHGDTSSPATSLSKDSNSSPVVHSGTSSAPATTAPVDSTSSPVVHGGTSSPATSPPGDSTSSPDHSSTSSPATRAPEDSTSTAVLSGTSSPATTAPVDSTSSPVAHDDTSSPATSLSEDSASSPVAHGGTSSPATSPLRDSTSSPVHSSASIQNIKTTSDLASTPDHNGTSVTTTSSALGSATSPDHSGTSTTTNSSESVLATTPVYSSMPFSTTKVTSGSAIIPDHNGSSVLPTSSVLGSATSLVYNTSAIATTPVSNGTQPSVPSQYPVSPTMATTSSHSTIASSSYYSTVPFSTFSSNSSPQLSVGVSFFFLSFYIQNHPFNSSLEDPSSNYYQELKRNISGLFLQIFNGDFLGISSIKFRSGSVVVESTVVFREGTFSASDVKSQLIQHKKEADDYNLTISEVKVNEMQFPPSAQSRPGVPGWGIALLVLVCILVALAIVYFLALAVCQCRRKSYGQLDIFPTQDTYHPMSEYPTYHTHGRYVPPGSTKRSPYEEVSAGNGSSSLSYTNPAVVTTSANL

name	Trim46 (ENSMUSG00000042766) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	RefSeq_mRNA_predicted:XM_006501613.1 RefSeq_mRNA_predicted:XM_006501614.2 RefSeq_peptide_predicted:XP_006501676.1 RefSeq_peptide_predicted:XP_006501677.1 Vega_transcript:OTTMUST00000052225 Vega_transcript:Trim46-004 Uniprot/SPTREMBL:D3YXA6 UCSC:uc008pyk.1 EMBL:AC132327 GO:GO:0005575 GO:GO:0005622 GO:GO:0008150 GO:GO:0008270 MGI_trans_name:Trim46-004 Vega_translation:187679 Vega_translation:OTTMUSP00000024717 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0008150 goslim_goa:GO:0043167 OTTP:OTTMUSP00000024717 OTTT:OTTMUST00000052225 UniParc:UPI0000F22269
definition	note : transcript_id=ENSMUST00000107464 protein_id : ENSMUSP00000103088 translation : MKNMEKELLCPVCQEMYKQPLVLPCTHNVCQACAREVLGQQGYIGHGGDPSSEPTSPASTPSTRSPRLSRRTLPKPDRLDRLLKSGFGTYPGRKRGALHPQTILFPCPACQGDVELGERGLSGLFRNLTLERVVERYRQSVSVGGAILCQLCKPPPLEATKGCTECRATFCNECFKLFHPWGTQKAQHEPTLPTLSFRPKGLMCPDHKEEVTHYCKTCQRLVCQLCRVRRTHSGHKITPVLSAYQALKDKLTKSLAYILGNQDTVQTQICELEETIRHTEVSGQQAKEEVSQLVRGLGAVLEEKRASLLQAIEECQQERLSRLSAQIHEHQSLLDGSGLVGYAQEVLKETDQPCFVQAAKQLHNRIARATEALQTFRPAASSSFRHCQLDVGREMKLLTELSFLRVPEAPVIDTQRTFAYDQIFLCWRLPPHSPPAWHYTVEFRRTDVPAQPGPTRWQRREEVRGTSALLENPDTGSVYVLRVRGCNKAGYGEYSEDVHLHTPPAPVLHFFLDGRWGASRERLAISKDQRAVRSIPGLPLLLAAERLLTGCHLSVDVVLGDVAVTQGRSYWACAVDPASYLVKVGVGLESKLQESFQGAPDVISPRYDPDSGHDSGAEDAAVEALPPFAFLTIGMGKILLGSGASSNAGLTGRDGPTASCTVPLPPRLGICLDYERGRVSFLDAVSFRGLLECPLDCSGPVCPAFCFIGGGAVQLQEPVGTKPERKVTIGGFAKLD

name	Trim46 (ENSMUSG00000042766) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS17498.1 RefSeq_peptide:NP_001034555 RefSeq_mRNA:NM_001039466.1 RefSeq_mRNA_predicted:XM_006501616.2 RefSeq_peptide_predicted:XP_006501679.2 Vega_transcript:OTTMUST00000052224 Vega_transcript:Trim46-003 Uniprot/SPTREMBL:Q3TC52 UCSC:uc008pyj.1 Fantom:F630208L19 EMBL:AC132327 EMBL:AK170904 GO:GO:0005575 GO:GO:0005622 GO:GO:0008150 GO:GO:0008270 MGI_trans_name:Trim46-003 Vega_translation:187680 Vega_translation:OTTMUSP00000024716 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0008150 goslim_goa:GO:0043167 protein_id:BAE42105.1 OTTP:OTTMUSP00000024716 OTTT:OTTMUST00000052224 UniParc:UPI00005B2732
definition	note : transcript_id=ENSMUST00000090924 protein_id : ENSMUSP00000088442 translation : MAAKRGTKTSMKNMEKELLCPVCQEMYKQPLVLPCTHNVCQACAREVLGQQGYIGHGGDPSSEPTSPASTPSTRSPRLSRRTLPKPDRLDRLLKSGFGTYPGRKRGALHPQTILFPCPACQGDVELGERGLSGLFRNLTLERVVERYRQSVSVGGAILCQLCKPPPLEATKGCTECRATFCNECFKLFHPWGTQKAQHEPTLPTLSFRPKGLMCPDHKEEVTHYCKTCQRLVCQLCRVRRTHSGHKITPVLSAYQALKDKLTKSLAYILGNQDTVQTQICELEETIRHTEVSGQQAKEEVSQLVRGLGAVLEEKRASLLQAIEECQQERLSRLSAQIHEHQSLLDGSGLVGYAQEVLKETDQPCFVQAAKQLHNRIARATEALQTFRPAASSSFRHCQLDVGREMKLLTELSFLRVPEAPVIDTQRTFAYDQIFLCWRLPPHSPPAWHYTVEFRRTDVPAQPGPTRWQRREEVRGTSALLENPDTGSVYVLRVRGCNKAGYGEYSEDVHLHTPPAPDTTRTVGTTAVPRTLPWRRYHPLLS

name	Trim46 (ENSMUSG00000042766) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS17497.1 Uniprot/SWISSPROT:Q7TNM2 RefSeq_peptide:NP_898858 RefSeq_mRNA:NM_183037.2 RefSeq_mRNA_predicted:XM_006501615.2 RefSeq_mRNA_predicted:XM_011240152.1 RefSeq_peptide_predicted:XP_006501678.1 RefSeq_peptide_predicted:XP_011238454.1 Vega_transcript:OTTMUST00000052222 Vega_transcript:Trim46-001 UCSC:uc008pyk.1 EMBL:AY251388 EMBL:BC065049 EMBL:U16175 GO:GO:0005575 GO:GO:0005622 GO:GO:0008150 GO:GO:0008270 MGI_trans_name:Trim46-001 Vega_translation:187681 Vega_translation:OTTMUSP00000024715 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0008150 goslim_goa:GO:0043167 protein_id:AAA98539.1 protein_id:AAP51208.1 OTTP:OTTMUSP00000024715 OTTT:OTTMUST00000052222 UniParc:UPI00001B5E1C
definition	note : transcript_id=ENSMUST00000041022 protein_id : ENSMUSP00000036053 translation : MAEGEDMQTFTSIMDALVRISTSMKNMEKELLCPVCQEMYKQPLVLPCTHNVCQACAREVLGQQGYIGHGGDPSSEPTSPASTPSTRSPRLSRRTLPKPDRLDRLLKSGFGTYPGRKRGALHPQTILFPCPACQGDVELGERGLSGLFRNLTLERVVERYRQSVSVGGAILCQLCKPPPLEATKGCTECRATFCNECFKLFHPWGTQKAQHEPTLPTLSFRPKGLMCPDHKEEVTHYCKTCQRLVCQLCRVRRTHSGHKITPVLSAYQALKDKLTKSLAYILGNQDTVQTQICELEETIRHTEVSGQQAKEEVSQLVRGLGAVLEEKRASLLQAIEECQQERLSRLSAQIHEHQSLLDGSGLVGYAQEVLKETDQPCFVQAAKQLHNRIARATEALQTFRPAASSSFRHCQLDVGREMKLLTELSFLRVPEAPVIDTQRTFAYDQIFLCWRLPPHSPPAWHYTVEFRRTDVPAQPGPTRWQRREEVRGTSALLENPDTGSVYVLRVRGCNKAGYGEYSEDVHLHTPPAPVLHFFLDGRWGASRERLAISKDQRAVRSIPGLPLLLAAERLLTGCHLSVDVVLGDVAVTQGRSYWACAVDPASYLVKVGVGLESKLQESFQGAPDVISPRYDPDSGHDSGAEDAAVEALPPFAFLTIGMGKILLGSGASSNAGLTGRDGPTASCTVPLPPRLGICLDYERGRVSFLDAVSFRGLLECPLDCSGPVCPAFCFIGGGAVQLQEPVGTKPERKVTIGGFAKLD

name
type	STS
link
xref	UniSTS_NUM:129816 UniSTS:D3Mit49
definition	note : map_weight=1 standard_name : D3Mit49

name
type	STS
link
xref	UniSTS_NUM:507664 UniSTS:D3Dcr14
definition	note : map_weight=1 standard_name : D3Dcr14

name
type	STS
link
xref	UniSTS_NUM:159137 UniSTS:AI385631 WI_MRC-RH:418616
definition	note : map_weight=1 standard_name : AI385631

name
type	misc_feature
link
xref
definition	note : contig AC132327.3 82537..174267(1)

name	Mtx1 (ENSMUSG00000064068)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000097646 Vega_transcript:OTTMUST00000097646 MGI_trans_name:Mtx1-017 OTTT:OTTMUST00000097646
definition	note : processed_transcript note : transcript_id=ENSMUST00000174324

name	Mir92b (ENSMUSG00000076255)
type	misc_RNA
link	VEGA Ensembl MGI
xref	RefSeq_ncRNA:NR_030579 UCSC:uc012csk.1 MGI_trans_name:Mir92b-201 RNACentral:URS000075CA49
definition	note : miRNA note : transcript_id=ENSMUST00000102300

name	Muc1 (ENSMUSG00000042784)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000048121 Vega_transcript:OTTMUST00000048121 MGI_trans_name:Muc1-002 OTTT:OTTMUST00000048121
definition	note : processed_transcript note : transcript_id=ENSMUST00000146844

name	Muc1 (ENSMUSG00000042784)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000048122 Vega_transcript:OTTMUST00000048122 MGI_trans_name:Muc1-003 OTTT:OTTMUST00000048122
definition	note : processed_transcript note : transcript_id=ENSMUST00000139206

name	Trim46 (ENSMUSG00000042766)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000052226 Vega_transcript:OTTMUST00000052226 MGI_trans_name:Trim46-005 OTTT:OTTMUST00000052226
definition	note : processed_transcript note : transcript_id=ENSMUST00000139419

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Muc1 (ENSMUSG00000042784)
Transcript ID	ENSMUST00000041142

Reports
substitution
cSNPs	10
Insertion	1
Deletion	5
SNPs	-1kb 89224997(c.-4123T>G), 89225188(c.-3932T>C), 89225308(c.-3812T>C), 89225590(c.-3530G>A), 89225672(c.-3448C>T), 89225751(c.-3369C>T), 89225764(c.-3356G>T), 89226337(c.-2783G>A), 89226751(c.-2369G>A), 89227252(c.-1868T>A), 89227435(c.-1685A>G), 89227777(c.-1343T>C), 89228143(c.-977T>G), 89228310(c.-810A>G), 89228530(c.-590A>G), 89228576(c.-544G>T), 89229046(c.-74C>G), 5'UTR CDS 89230125(c.273C>T), 89230161(c.309C>T), 89230173(c.321A>G), 89230322(c.470C>T), 89230523(c.671T>C), 89230553(c.701C>T), 89230569(c.717T>G), 89230572(c.720T>C), 89230775(c.923T>A), 89231019(c.1167C>T), 3'UTR 89233139(c.41T>C), INTRON 89229619(c.59-292T>C), 89229855(c.59-56G>C), 89231388(c.1415+23G>T), 89231400(c.1415+35T>A), 89232146(c.1821+31T>G), 89232800(c.1822-224T>C), 89232824(c.1822-200T>C), 89232828(c.1822-196C>A), 89232837(c.1822-187G>A), 89232864(c.1822-160A>C), +1kb 89233428(c.330G>C), 89233627(c.529T>C), 89233859(c.761G>A), 89233982(c.884T>C), 89234132(c.1034A>G), 89234145(c.1047C>T), 89234374(c.1276A>C), 89234393(c.1295G>A), 89234506(c.1408T>C), 89234514(c.1416T>C), 89234519(c.1421G>A), 89234856(c.1758A>G), 89235166(c.2068T>C), 89235397(c.2299C>A), 89235622(c.2524G>A), 89235644(c.2546T>G), 89235645(c.2547C>T), 89235654(c.2556G>C), 89236644(c.3546G>C), 89236831(c.3733A>G), 89236933(c.3835G>A), 89237027(c.3929G>A), 89237105(c.4007T>A), 89237218(c.4120A>C), 89237695(c.4597G>A), 89237717(c.4619G>A), 89237915(c.4817G>A), 89238106(c.*5008A>G),
Insertions	-1kb 89224556 (c.-4564_-4563insTCTT), 5'UTR CDS 3'UTR INTRON +1kb
Deletions	-1kb 89228062 (c.-1057delC), 89228998 (c.-121_-118delTGTG), 5'UTR CDS 3'UTR INTRON 89229379 (c.58+204_58+210delAATAATA), 89229743 (c.59-167_59-162delTTTGTT), 89232855 (c.1822-168delG), +1kb
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	6
non-synonymous num	4
synonymous substitutions	89230125 (p.Gly91Gly), 89230161 (p.Ser103Ser), 89230173 (p.Pro107Pro), 89230569 (p.Ser239Ser), 89230572 (p.Ser240Ser), 89231019 (p.His389His),
non-synonymous substitutions	89230322 (p.Ser157Leu), 89230523 (p.Leu224Pro), 89230553 (p.Ala234Val), 89230775 (p.Val308Asp),
B6 transcript (ENSMUST00000041142)	MTPGIRAPFFLLLLLASLKGFLALPSEENSVTSSQDTSSSLASTTTPVHSSNSDPATRPP GDSTSSPVQSSTSSPATRAPEDSTSTAVLSGTSSPATTAPVNSASSPVAHGDTSSPATSL SKDSNSSPVVHSGTSSAPATTAPVDSTSSPVVHGGTSSPATSPPGDSTSSPDHSSTSSPA TRAPEDSTSTAVLSGTSSPATTAPVDSTSSPVAHDDTSSPATSLSEDSASSPVAHGGTSS PATSPLRDSTSSPVHSSASIQNIKTTSDLASTPDHNGTSVTTTSSALGSATSPDHSGTST TTNSSESVLATTPVYSSMPFSTTKVTSGSAIIPDHNGSSVLPTSSVLGSATSLVYNTSAI ATTPVSNGTQPSVPSQYPVSPTMATTSSHSTIASSSYYSTVPFSTFSSNSSPQLSVGVSF FFLSFYIQNHPFNSSLEDPSSNYYQELKRNISGLFLQIFNGDFLGISSIKFRSGSVVVES TVVFREGTFSASDVKSQLIQHKKEADDYNLTISEVKVNEMQFPPSAQSRPGVPGWGIALL VLVCILVALAIVYFLALAVCQCRRKSYGQLDIFPTQDTYHPMSEYPTYHTHGRYVPPGST KRSPYEEVSAGNGSSSLSYTNPAVVTTSANL*
MSMv4 transcript	MTPGIRAPFFLLLLLASLKGFLALPSEENSVTSSQDTSSSLASTTTPVHSSNSDPATRPP GDSTSSPVQSSTSSPATRAPEDSTSTAVLSGTSSPATTAPVNSASSPVAHGDTSSPATSL SKDSNSSPVVHSGTSSAPATTAPVDSTSSPVVHGGTLSPATSPPGDSTSSPDHSSTSSPA TRAPEDSTSTAVLSGTSSPATTAPVDSTSSPVAHDDTSSPATSPSEDSASSPVVHGGTSS PATSPLRDSTSSPVHSSASIQNIKTTSDLASTPDHNGTSVTTTSSALGSATSPDHSGTST TTNSSESDLATTPVYSSMPFSTTKVTSGSAIIPDHNGSSVLPTSSVLGSATSLVYNTSAI ATTPVSNGTQPSVPSQYPVSPTMATTSSHSTIASSSYYSTVPFSTFSSNSSPQLSVGVSF FFLSFYIQNHPFNSSLEDPSSNYYQELKRNISGLFLQIFNGDFLGISSIKFRSGSVVVES TVVFREGTFSASDVKSQLIQHKKEADDYNLTISEVKVNEMQFPPSAQSRPGVPGWGIALL VLVCILVALAIVYFLALAVCQCRRKSYGQLDIFPTQDTYHPMSEYPTYHTHGRYVPPGST KRSPYEEVSAGNGSSSLSYTNPAVVTTSANL*
homology	99.37 (632 / 632)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Muc1 (ENSMUSG00000042784)
Transcript ID	ENSMUST00000041142


..........TTGATGCCCCCCCTTCCAGATACCTTGGGGCTCCAACCACTTTTACCCTA
CCCGCAAACACCATCCCCAGAAGTCTAGTAGCCCAAGTAATGACCCTTGCTTCTCCCCTA
CAGTGTGCATTCTTTCCTATCTGTCCGAGGCATTGATTCTTTTCGCCAAGGCACAATTAA
CTTCCTTAAGTTAATCTGTCTCAACTTGGGCTGTGCTGCCAAACTATCGGCTGGTGCGAG
TACGCCGCGCGACGCTCGCGGTGGCCACTAGAGGGCAGGCGTTTCCGGATAGAAGGGCCG
GTCAACCTGCCACTCAAGGTGGAGGGTTGGGTAGGAAGGACCTTAGGCTTCAGTGGAGCC
CAAGTTTAGTCCTTTTTAAGTGGAAATTTCCCCCACCGCCTTTCTCGGGAGAAAGCCAAA
GAGAGACCCAGGCTACTGGAAAGTCTGGCAGGGGCGGGGATTGTGGTTTTCAGAGTACCG
GGAGCGGCTAGAAGGGCGGGGCTGTTCCGGGAAGTGGCGGGGGGGGGGGTGGTTCGGGGA
GGGAGACTAAAACTAGCGACCTGTCCACTATTATCCAGCCCCCTTATGTCCTCTCAACTT
GTGAGAAGTGGTGTTCAAGGACCCGCAGAGAGAATAGGAAAAGGGATCGGGGGACCTAGG
GATGGACTTCCCATGTCTTGCTGTCCAGGGCCTTTCTGTGTTTCCTTTCCTCTTCTTGGC
GGTCACTCTGGGACTAAAACCAGAGCCAGGGGGCCCCAGGTTTCCTCCACATACACACCT
GGGGTAGTCAAGGAGCGGTTGGTAAAAGTGGGAGGCCAGATGGAGAAAAAACAGGTTGTC
ATAAGGTTGAGTGATTGGAGCCCAAGTACCCTACACAGGAATGACTGGGGGGGAGGAGGA
GGAAAAGAATAGGGGAGGGGGCGGAGTTTTGTTACCTGTCACCTGCTCTGACTGTGCCTA
GGGCGGGAGGGGGACTGGTATAAAGCAGCAGGCACCAGCGCTGTTCCACC
TCACACACGGAGCGCCAGCCTTGAGTTTGTTTTCTAGCCCCTTCCCGCCTGTTCACCACCACCATGACCCCGGGCATTCGGGCTCCTTTCTTCCTGCTGCTACTTCTAGCAAGTCTAAAAG
GTGAGAGGCGCAAGGTGGGGAGGGG..........CCCCTAATCTTCCACTCTGGTTCAG
GTTTTCTTGCCCTTCCAAGTGAGGAAAACAGTGTCACCTCATCTCAGGACACCAGCAGTTCCTTAGCATCGACTACCACTCCAGTCCACAGCAGCAACTCAGACCCAGCCACCAGACCTCCAGGGGACTCCACCAGCTCTCCAGTCCAGAGTAGCACCTCTTCTCCAGCCACCAGAGCTCCTGAAGACTCTACCAGTACTGCAGTCCTCAGTGGTACCTCCTCCCCAGCCACCACAGCTCCAGTGAACTCTGCCAGCTCTCCGGTAGCCCATGGTGACACCTCTTCCCCAGCCACTAGCCTTTCAAAAGACTCCAACAGCTCTCCAGTAGTCCACAGTGGCACCTCTTCAGCTCCGGCCACCACAGCTCCAGTGGATTCCACCAGCTCTCCAGTAGTCCACGGTGGTACCTTGTCCCCAGCCACCAGCCCTCCAGGGGACTCCACCAGCTCTCCAGACCATAGTAGCACCTCTTCTCCAGCCACCAGAGCTCCCGAAGACTCTACCAGTACTGCAGTCCTCAGTGGCACCTCCTCCCCAGCCACCACAGCTCCAGTGGACTCCACCAGCTCTCCAGTAGCCCATGATGACACCTCTTCCCCAGCCACTAGCCCTTCAGAAGACTCCGCCAGCTCTCCAGTAGTCCACGGTGGCACCTCGTCCCCAGCCACCAGCCCTCTAAGGGACTCCACCAGTTCTCCAGTCCACAGTAGTGCCTCCATCCAAAACATCAAGACTACATCAGACTTAGCTAGCACTCCAGACCACAATGGCACCTCAGTCACAACTACCAGCTCTGCACTGGGCTCAGCCACCAGTCCAGACCACAGTGGTACCTCAACTACAACTAACAGCTCTGAATCAGACTTGGCCACCACTCCAGTTTACAGTAGCATGCCATTCTCTACTACCAAAGTGACGTCAGGCTCAGCTATCATTCCAGACCACAATGGCTCCTCGGTGCTACCTACCAGTTCTGTGTTGGGCTCAGCTACCAGTCTAGTCTATAATACCTCTGCAATAGCTACAACTCCAGTCAGCAATGGCACTCAGCCTTCAGTGCCAAGTCAATACCCTGTTTCTCCTACCATGGCCACCACCTCCAGCCATAGCACTATTGCCAGCAGCTCTTACTATAGCACAGTACCATTTTCTACCTTCTCCAGTAACAGTTCACCCCAGTTGTCTGTTGGGGTCTCCTTCTTCTTCTTGTCTTTTTACATTCAAAACCACCCATTTAATTCTTCTCTGGAAGACCCCAGCTCCAACTACTACCAAGAACTGAAGAGGAACATTTCTGGATTG
GTGGGTATCAGCCTAGCCTCTGCCA..........CCTGAGTCTTCTCCTCTTCTCCCAG
TTTCTGCAGATTTTTAACGGAGATTTTCTGGGGATCTCTAGCATCAAGTTCAG
GTACAGTTCTGGATTTGACTTGTGG..........TGAGCTCCCTATTTCCTGTGACCAG
GTCAGGCTCCGTGGTGGTAGAATCGACTGTGGTTTTCCGGGAGGGTACTTTTAGTGCCTCTGACGTGAAGTCACAGCTTATACAGCATAAGAAGGAGGCAGATGACTATAATCTGACTATTTCAGAAGTCAAAG
GTGAGGTGATAGCCCCAGCTGCAGC..........CCCTGACCACCGCTTTCCCTTCTAG
TGAATGAGATGCAGTTCCCTCCCTCTGCCCAGTCCCGGCCGGGGGTACCAGGCTGGGGCATTGCCCTGCTGGTGCTGGTCTGTATTTTGGTTGCTTTGGCTATCGTCTATTTCCTTGCCCTG
GTAAGTCTCAAGCCTTCTGCGGCGC..........CCAATCCAATCTCCTGTCTCCCTAG
GCAGTGTGCCAGTGCCGCCGAAAGAGCTATGGGCAGCTGGACATCTTTCCAACCCAGGACACCTACCATCCTATGAGTGAATACCCTACCTACCACACTCACGGACGCTACGTGCCCCCTGGCAGTACCAAGCGTAGCCCCTATGAGGAG
GTAAAGTGTATCCCGAAGAAGCTTG..........CTGAAATTATTTCCCCTTCACTCAG
GTTTCGGCAGGTAATGGCAGTAGCAGTCTCTCTTATACCAACCCAGCTGTGGTGACCACTTCTGCCAACTTGTAGGAGCAAGTCACCCCACCCACTTGGGGCAGCTTTGGCGGTCCGCTCCCTCAGTGGTCACTGCCAGACCCCTGCACTCTGATCTGGGCTGGTGAGCCAGGACTTCTGGTAGGCTGTTCATGCCCTTTGTCAAGCGCCTCAACTACGTAAGCCTGGTGAAGCCCAGCCCTGCCCTGGGGGACACTGGGGCAGTTAGTGGTGGCTCTCAGAAGGACTGGCCTGGAAAACTGGAGACAGGGATGGGAACCCAAACATAGCTGAATAAAAGATGGCCTCCTGTTAGTTA
TGCCAGCTGTGGTTTTTCATCTGCAACTCTTGGGTCAGAGCGGCCACGACTCAGCTATGA
AGGGCCTGGAAGCGGCCTTTCGGGGAGGACTCCCGAAGGCAAGGAGCCACAGAGGGGTGG
AAGGCTGGCCTCATTCGAAAACAGGGATATGGGGAAGAGGTGACACAGGGACACAGAGGT
GGCCTGAGAAAGAACTGAGGAATTGCCTCTCTCCTGTGCCTGGCGGCCCTGCAGGAAGGA
GGAAACGAAACTTAGGCTGGCTCCAGTGGGCCTGCCCCAGACCTGGCCTCAGCTCGTGCC
CATGACTCTCTCCCGAGGCCAGCCCTTGCCCCTCTCCGACTGGCACAGTGCCCTTAACGC
AGCTCTATTCTTAACTGTCCAGGTGTGAAGCAAATCCTTGGACCACAGATAACAGTAGCA
GAGTCAACACAGCAGTGATAAGCCAGGGCTGGGACAGATCCGGGTGCTGTTGGCACCAGG
CCCTGGCCCTCAGCCACCCCACCCGCCACTGCCTCTGGGTGGGCTCTCTGGCACCCTCGG
AATGAGGAAGTGGTTCTAGTTCCCTGACCCCTTTAGGTCGACACCATGCCACACCCTCAG
CTACATCCCCTCAGGGTTCATGTCTGTGGTCCAGACACCCAAGGTAAAGTTCTAGGCTAG
CAGTCGGTGCTGCGGCCCCTGGCGGTGAGAGTCGGTTGGAGTCTGGGCTTAGGTGTAGTA
GGACCCCCTACCCTTGGGTGTCGATGGGTCGGACCAGAAATTATCAGGAATGGTCTCACT
CCAGGAAAACAGAAATGTGCCTGGTGTCACAGTTTATTGTTTATAAACCATGAAAATTAC
AGCTGTTGCTCAGCACAGGCCTAGCAATGCCCACTGTACGGAGGCAGTAGCAGGCACCAG
AGGCCTAGCTTGGCCCAACCCAATGGGGACACCAGCCTTAACTGAGTTCCCAAGGGAGAC
TTGGCACGTTGGCATGGGTGCTGGATAGGTAACGCATGCA..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........TTGATGCCCCCCCTTCCAGATACCTTGGGGCTCCAACCACTTTTACCCTA CCCGCAAACACCATCCCCAGAAGTCTAGTAGCCCAAGTAATGACCCTTGCTTCTCCCCTA CAGTGTGCATTCTTTCCTATCTGTCCGAGGCATTGATTCTTTTCGCCAAGGCACAATTAA CTTCCTTAAGTTAATCTGTCTCAACTTGGGCTGTGCTGCCAAACTATCGGCTGGTGCGAG TACGCCGCGCGACGCTCGCGGTGGCCACTAGAGGGCAGGCGTTTCCGGATAGAAGGGCCG GTCAACCTGCCACTCAAGGTGGAGGGTTGGGTAGGAAGGACCTTAGGCTTCAGTGGAGCC CAAGTTTAGTCCTTTTTAAGTGGAAATTTCCCCCACCGCCTTTCTCGGGAGAAAGCCAAA GAGAGACCCAGGCTACTGGAAAGTCTGGCAGGGGCGGGGATTGTGGTTTTCAGAGTACCG GGAGCGGCTAGAAGGGCGGGGCTGTTCCGGGAAGTGGCGGGGGGGGGGGTGGTTCGGGGA GGGAGACTAAAACTAGCGACCTGTCCACTATTATCCAGCCCCCTTATGTCCTCTCAACTT GTGAGAAGTGGTGTTCAAGGACCCGCAGAGAGAATAGGAAAAGGGATCGGGGGACCTAGG GATGGACTTCCCATGTCTTGCTGTCCAGGGCCTTTCTGTGTTTCCTTTCCTCTTCTTGGC GGTCACTCTGGGACTAAAACCAGAGCCAGGGGGCCCCAGGTTTCCTCCACATACACACCT GGGGTAGTCAAGGAGCGGTTGGTAAAAGTGGGAGGCCAGATGGAGAAAAAACAGGTTGTC ATAAGGTTGAGTGATTGGAGCCCAAGTACCCTACACAGGAATGACTGGGGGGGAGGAGGA GGAAAAGAATAGGGGAGGGGGCGGAGTTTTGTTACCTGTCACCTGCTCTGACTGTGCCTA GGGCGGGAGGGGGACTGGTATAAAGCAGCAGGCACCAGCGCTGTTCCACC
1	EXON 1	89,229,057	89,229,177	-	1	121	TCACACACGGAGCGCCAGCCTTGAGTTTGTTTTCTAGCCCCTTCCCGCCTGTTCACCACC ACCATGACCCCGGGCATTCGGGCTCCTTTCTTCCTGCTGCTACTTCTAGCAAGTCTAAAA G
	INTRON 1 - 2	89,229,178	89,229,910			733	GTGAGAGGCGCAAGGTGGGGAGGGG..........CCCCTAATCTTCCACTCTGGTTCAG
2	EXON 2	89,229,911	89,231,214	1	0	1,304	GTTTTCTTGCCCTTCCAAGTGAGGAAAACAGTGTCACCTCATCTCAGGACACCAGCAGTT CCTTAGCATCGACTACCACTCCAGTCCACAGCAGCAACTCAGACCCAGCCACCAGACCTC CAGGGGACTCCACCAGCTCTCCAGTCCAGAGTAGCACCTCTTCTCCAGCCACCAGAGCTC CTGAAGACTCTACCAGTACTGCAGTCCTCAGTGGTACCTCCTCCCCAGCCACCACAGCTC CAGTGAACTCTGCCAGCTCTCCGGTAGCCCATGGTGACACCTCTTCCCCAGCCACTAGCC TTTCAAAAGACTCCAACAGCTCTCCAGTAGTCCACAGTGGCACCTCTTCAGCTCCGGCCA CCACAGCTCCAGTGGATTCCACCAGCTCTCCAGTAGTCCACGGTGGTACCTTGTCCCCAG CCACCAGCCCTCCAGGGGACTCCACCAGCTCTCCAGACCATAGTAGCACCTCTTCTCCAG CCACCAGAGCTCCCGAAGACTCTACCAGTACTGCAGTCCTCAGTGGCACCTCCTCCCCAG CCACCACAGCTCCAGTGGACTCCACCAGCTCTCCAGTAGCCCATGATGACACCTCTTCCC CAGCCACTAGCCCTTCAGAAGACTCCGCCAGCTCTCCAGTAGTCCACGGTGGCACCTCGT CCCCAGCCACCAGCCCTCTAAGGGACTCCACCAGTTCTCCAGTCCACAGTAGTGCCTCCA TCCAAAACATCAAGACTACATCAGACTTAGCTAGCACTCCAGACCACAATGGCACCTCAG TCACAACTACCAGCTCTGCACTGGGCTCAGCCACCAGTCCAGACCACAGTGGTACCTCAA CTACAACTAACAGCTCTGAATCAGACTTGGCCACCACTCCAGTTTACAGTAGCATGCCAT TCTCTACTACCAAAGTGACGTCAGGCTCAGCTATCATTCCAGACCACAATGGCTCCTCGG TGCTACCTACCAGTTCTGTGTTGGGCTCAGCTACCAGTCTAGTCTATAATACCTCTGCAA TAGCTACAACTCCAGTCAGCAATGGCACTCAGCCTTCAGTGCCAAGTCAATACCCTGTTT CTCCTACCATGGCCACCACCTCCAGCCATAGCACTATTGCCAGCAGCTCTTACTATAGCA CAGTACCATTTTCTACCTTCTCCAGTAACAGTTCACCCCAGTTGTCTGTTGGGGTCTCCT TCTTCTTCTTGTCTTTTTACATTCAAAACCACCCATTTAATTCTTCTCTGGAAGACCCCA GCTCCAACTACTACCAAGAACTGAAGAGGAACATTTCTGGATTG
	INTRON 2 - 3	89,231,215	89,231,312			98	GTGGGTATCAGCCTAGCCTCTGCCA..........CCTGAGTCTTCTCCTCTTCTCCCAG
3	EXON 3	89,231,313	89,231,365	0	2	53	TTTCTGCAGATTTTTAACGGAGATTTTCTGGGGATCTCTAGCATCAAGTTCAG
	INTRON 3 - 4	89,231,366	89,231,500			135	GTACAGTTCTGGATTTGACTTGTGG..........TGAGCTCCCTATTTCCTGTGACCAG
4	EXON 4	89,231,501	89,231,634	2	1	134	GTCAGGCTCCGTGGTGGTAGAATCGACTGTGGTTTTCCGGGAGGGTACTTTTAGTGCCTC TGACGTGAAGTCACAGCTTATACAGCATAAGAAGGAGGCAGATGACTATAATCTGACTAT TTCAGAAGTCAAAG
	INTRON 4 - 5	89,231,635	89,231,762			128	GTGAGGTGATAGCCCCAGCTGCAGC..........CCCTGACCACCGCTTTCCCTTCTAG
5	EXON 5	89,231,763	89,231,884	1	0	122	TGAATGAGATGCAGTTCCCTCCCTCTGCCCAGTCCCGGCCGGGGGTACCAGGCTGGGGCA TTGCCCTGCTGGTGCTGGTCTGTATTTTGGTTGCTTTGGCTATCGTCTATTTCCTTGCCC TG
	INTRON 5 - 6	89,231,885	89,231,965			81	GTAAGTCTCAAGCCTTCTGCGGCGC..........CCAATCCAATCTCCTGTCTCCCTAG
6	EXON 6	89,231,966	89,232,115	0	0	150	GCAGTGTGCCAGTGCCGCCGAAAGAGCTATGGGCAGCTGGACATCTTTCCAACCCAGGAC ACCTACCATCCTATGAGTGAATACCCTACCTACCACACTCACGGACGCTACGTGCCCCCT GGCAGTACCAAGCGTAGCCCCTATGAGGAG
	INTRON 6 - 7	89,232,116	89,233,023			908	GTAAAGTGTATCCCGAAGAAGCTTG..........CTGAAATTATTTCCCCTTCACTCAG
7	EXON 7	89,233,024	89,233,381	0	-	358	GTTTCGGCAGGTAATGGCAGTAGCAGTCTCTCTTATACCAACCCAGCTGTGGTGACCACT TCTGCCAACTTGTAGGAGCAAGTCACCCCACCCACTTGGGGCAGCTTTGGCGGTCCGCTC CCTCAGTGGTCACTGCCAGACCCCTGCACTCTGATCTGGGCTGGTGAGCCAGGACTTCTG GTAGGCTGTTCATGCCCTTTGTCAAGCGCCTCAACTACGTAAGCCTGGTGAAGCCCAGCC CTGCCCTGGGGGACACTGGGGCAGTTAGTGGTGGCTCTCAGAAGGACTGGCCTGGAAAAC TGGAGACAGGGATGGGAACCCAAACATAGCTGAATAAAAGATGGCCTCCTGTTAGTTA
	3' upstream sequence						TGCCAGCTGTGGTTTTTCATCTGCAACTCTTGGGTCAGAGCGGCCACGACTCAGCTATGA AGGGCCTGGAAGCGGCCTTTCGGGGAGGACTCCCGAAGGCAAGGAGCCACAGAGGGGTGG AAGGCTGGCCTCATTCGAAAACAGGGATATGGGGAAGAGGTGACACAGGGACACAGAGGT GGCCTGAGAAAGAACTGAGGAATTGCCTCTCTCCTGTGCCTGGCGGCCCTGCAGGAAGGA GGAAACGAAACTTAGGCTGGCTCCAGTGGGCCTGCCCCAGACCTGGCCTCAGCTCGTGCC CATGACTCTCTCCCGAGGCCAGCCCTTGCCCCTCTCCGACTGGCACAGTGCCCTTAACGC AGCTCTATTCTTAACTGTCCAGGTGTGAAGCAAATCCTTGGACCACAGATAACAGTAGCA GAGTCAACACAGCAGTGATAAGCCAGGGCTGGGACAGATCCGGGTGCTGTTGGCACCAGG CCCTGGCCCTCAGCCACCCCACCCGCCACTGCCTCTGGGTGGGCTCTCTGGCACCCTCGG AATGAGGAAGTGGTTCTAGTTCCCTGACCCCTTTAGGTCGACACCATGCCACACCCTCAG CTACATCCCCTCAGGGTTCATGTCTGTGGTCCAGACACCCAAGGTAAAGTTCTAGGCTAG CAGTCGGTGCTGCGGCCCCTGGCGGTGAGAGTCGGTTGGAGTCTGGGCTTAGGTGTAGTA GGACCCCCTACCCTTGGGTGTCGATGGGTCGGACCAGAAATTATCAGGAATGGTCTCACT CCAGGAAAACAGAAATGTGCCTGGTGTCACAGTTTATTGTTTATAAACCATGAAAATTAC AGCTGTTGCTCAGCACAGGCCTAGCAATGCCCACTGTACGGAGGCAGTAGCAGGCACCAG AGGCCTAGCTTGGCCCAACCCAATGGGGACACCAGCCTTAACTGAGTTCCCAAGGGAGAC TTGGCACGTTGGCATGGGTGCTGGATAGGTAACGCATGCA..........

Sequence Detail Report

Gene Symbol (Gene ID)	Muc1 (ENSMUSG00000042784)
Transcript ID	ENSMUST00000041142

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 632 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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