MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Gtf3c3 (ENSMUSG00000041303)

Cross Reference

CCDS	CCDS14958.1
EMBL	AC124538, AK165830, BC141157
Fantom	G730002A05
GO	GO:0000127, GO:0000127, GO:0003674, ...show all
goslim_goa	GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name	Gtf3c3-001
OTTP	OTTMUSP00000066978
OTTT	OTTMUST00000121670
protein_id	AAI41158.1, BAE38400.1
Reactome	R-MMU-504046, R-MMU-74158, R-MMU-74160, ...show all

RefSeq_mRNA	NM_001033194.2
RefSeq_peptide	NP_001028366
UCSC	uc007azp.1
UniParc	UPI00001E2DE0
Uniprot/SPTREMBL	Q3TMP1
Vega_transcript	Gtf3c3-001, OTTMUST00000121670
Vega_translation	179298, OTTMUSP00000066978

Definition

protein_id:ENSMUSP00000039420
translation:

MSGFSPELIDYLEGKISFEEFERRREERKTREKKSVQEKGKSSPKENPDDSEVPSSSGID
SAKSQDKDANEGETSDGVSKSVHKVFASMLGETEDDEEEEEEEEEEETAEQPTAGDVFVL
EMVLNRETKKMMKEKRPRSKLPRALRGLMGEANIRFARGEHEEAILMCMEIIRQAPLAYE
PFSTLAMIYEDQGDMEKSLQFELIAAHLNPSDTEEWVRLAEMSLEQDNIKQAIFCYTKAL
KYEPTNVRYLWERSSLYEQMGDHKMAMDGYRRILNLLSPSDGERFMQLARDMAKSYYEAN
DSASAINIIEEAFSKHQGLVSMEDVNIAAELYISNKQYDKALEVITDFSGIILEKETLEE
GTSEENKAAETVTCSIPDSVPIDITVKLMVCLVHLNILEPLNPLLTTLVEQNPEDMGDLY
LDVAEAFLDVGEYNSALPLLSALVCSERYNLAVVWLRHAECLKALGYMERAAESYSKVVD
LAPLHLDARISLSILQQQLGRPEKALEALEPMYDPDTLAQDANAAQQELKLLLHRSTLLF
SQGKMYGYLDTLLTMLAMLLKVAMNRAQVCLISSSKSGERHLYLIKVSRDKISDNNEQET
SNYDAKAIFAVLTSVLPKEDWWNLLLKAIYTLSDLARFQEAELLVDSSLEYYSFYDDRQK
RKELEYFGLSAAILDKNFRKAYDYIRVMVMENVNKPQLWNIFNQVTMHSQDVRHHRFCLR
LMLKNPDNHALCVLNGHNAFVSGSFKHALGQYVQAFRAYPSEPLYNLCIGLTFIHMASQK
YVLKRHALTVQGFSFLNRYLSIRGPCQESFYNLGRGLHQLGLTHLAIHYYQKALALPPLV
VEGIEVDQLDLRRDIAYNMSLIYQSSGNTAMAQKLLYTYCVI

Chromosome

Length
Position(start - end)

41,033
54,397,880 - 54,438,914

Orient to Chromosome

minus

Link

Location : (1:54397880-54438914)
/

Detail Map

name	Gtf3c3 (ENSMUSG00000041303)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Gtf3c3 note : general transcription factor IIIC, polypeptide 3 [Source:MGI Symbol;Acc:MGI:2138383]

name	Gtf3c3 (ENSMUSG00000041303)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000041638

name	Gtf3c3 (ENSMUSG00000041303) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS14958.1 RefSeq_peptide:NP_001028366 RefSeq_mRNA:NM_001033194.2 Vega_transcript:Gtf3c3-001 Vega_transcript:OTTMUST00000121670 Uniprot/SPTREMBL:Q3TMP1 UCSC:uc007azp.1 Fantom:G730002A05 EMBL:AC124538 EMBL:AK165830 EMBL:BC141157 GO:GO:0000127 GO:GO:0000127 GO:GO:0003674 GO:GO:0008150 MGI_trans_name:Gtf3c3-001 Vega_translation:179298 Vega_translation:OTTMUSP00000066978 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 protein_id:AAI41158.1 protein_id:BAE38400.1 OTTP:OTTMUSP00000066978 OTTT:OTTMUST00000121670 Reactome:R-MMU-504046 Reactome:R-MMU-74158 Reactome:R-MMU-74160 Reactome:R-MMU-749476 Reactome:R-MMU-76046 Reactome:R-MMU-76061 Reactome:R-MMU-76066 UniParc:UPI00001E2DE0
definition	note : transcript_id=ENSMUST00000041638 protein_id : ENSMUSP00000039420 translation : MSGFSPELIDYLEGKISFEEFERRREERKTREKKSVQEKGKSSPKENPDDSEVPSSSGIDSAKSQDKDANEGETSDGVSKSVHKVFASMLGETEDDEEEEEEEEEEETAEQPTAGDVFVLEMVLNRETKKMMKEKRPRSKLPRALRGLMGEANIRFARGEHEEAILMCMEIIRQAPLAYEPFSTLAMIYEDQGDMEKSLQFELIAAHLNPSDTEEWVRLAEMSLEQDNIKQAIFCYTKALKYEPTNVRYLWERSSLYEQMGDHKMAMDGYRRILNLLSPSDGERFMQLARDMAKSYYEANDSASAINIIEEAFSKHQGLVSMEDVNIAAELYISNKQYDKALEVITDFSGIILEKETLEEGTSEENKAAETVTCSIPDSVPIDITVKLMVCLVHLNILEPLNPLLTTLVEQNPEDMGDLYLDVAEAFLDVGEYNSALPLLSALVCSERYNLAVVWLRHAECLKALGYMERAAESYSKVVDLAPLHLDARISLSILQQQLGRPEKALEALEPMYDPDTLAQDANAAQQELKLLLHRSTLLFSQGKMYGYLDTLLTMLAMLLKVAMNRAQVCLISSSKSGERHLYLIKVSRDKISDNNEQETSNYDAKAIFAVLTSVLPKEDWWNLLLKAIYTLSDLARFQEAELLVDSSLEYYSFYDDRQKRKELEYFGLSAAILDKNFRKAYDYIRVMVMENVNKPQLWNIFNQVTMHSQDVRHHRFCLRLMLKNPDNHALCVLNGHNAFVSGSFKHALGQYVQAFRAYPSEPLYNLCIGLTFIHMASQKYVLKRHALTVQGFSFLNRYLSIRGPCQESFYNLGRGLHQLGLTHLAIHYYQKALALPPLVVEGIEVDQLDLRRDIAYNMSLIYQSSGNTAMAQKLLYTYCVI

name
type	STS
link
xref	UniSTS_NUM:162180 UniSTS:RH125358
definition	note : map_weight=1 standard_name : RH125358

name
type	misc_feature
link
xref
definition	note : contig AC124538.4 31836..181512(1)

name	Gtf3c3 (ENSMUSG00000041303)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000121671 Vega_transcript:OTTMUST00000121671 MGI_trans_name:Gtf3c3-003 OTTT:OTTMUST00000121671
definition	note : retained_intron note : transcript_id=ENSMUST00000190419

name	Gtf3c3 (ENSMUSG00000041303)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000121672 Vega_transcript:OTTMUST00000121672 MGI_trans_name:Gtf3c3-002 OTTT:OTTMUST00000121672
definition	note : retained_intron note : transcript_id=ENSMUST00000189906

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Gtf3c3 (ENSMUSG00000041303)
Transcript ID	ENSMUST00000041638

Reports
substitution
cSNPs	7
Insertion	36
Deletion	42
SNPs	+1kb 54439193(c.-279G>A), 54439303(c.-389A>T), 54439317(c.-403C>T), 54439663(c.-749G>A), 54439719(c.-805G>A), 54439998(c.-1084T>C), 54440183(c.-1269T>C), 54440215(c.-1301G>T), 54440275(c.-1361G>A), 54440405(c.-1491G>A), 54440465(c.-1551G>A), 54440547(c.-1633A>T), 54440723(c.-1809A>G), 54440733(c.-1819G>A), 54440860(c.-1946G>A), 54440880(c.-1966A>C), 54440934(c.-2020T>C), 54440986(c.-2072T>C), 54441016(c.-2102T>C), 54441040(c.-2126T>C), 54441651(c.-2737G>A), 54441919(c.-3005A>C), 54441951(c.-3037T>C), 54442412(c.-3498T>A), 54442479(c.-3565A>G), 54442627(c.-3713A>C), 54442728(c.-3814C>G), 54442756(c.-3842T>A), 54442966(c.-4052T>G), 54443208(c.-4294G>A), 54443215(c.-4301A>G), 54443263(c.-4349C>T), 54443422(c.-4508A>G), 54443435(c.-4521G>A), 54443452(c.-4538G>A), 54443541(c.-4627T>A), 54443636(c.-4722T>G), 54443760(c.-4846A>G), 5'UTR CDS 54397994(c.2535A>G), 54405950(c.1944C>T), 54419501(c.1260T>C), 54419525(c.1236C>T), 54420426(c.1176T>C), 54424138(c.900T>C), 54437878(c.168A>G), 3'UTR 54396083(c.1797T>C), 54396111(c.1769T>C), 54397679(c.201A>G), 54397731(c.149T>C), 54397837(c.43A>T), INTRON 54398023(c.2527-21G>A), 54398083(c.2527-81C>T), 54398132(c.2527-130T>G), 54398133(c.2527-131C>T), 54398285(c.2527-283G>T), 54398392(c.2527-390G>A), 54398647(c.2526+482A>C), 54398648(c.2526+481A>T), 54398649(c.2526+480C>T), 54398666(c.2526+463C>G), 54398788(c.2526+341A>G), 54398954(c.2526+175C>T), 54398999(c.2526+130G>T), 54399046(c.2526+83A>G), 54399076(c.2526+53C>A), 54400343(c.2374-1062C>T), 54400456(c.2374-1175T>C), 54400515(c.2374-1234G>A), 54400638(c.2374-1357A>G), 54400700(c.2374-1419T>A), 54400915(c.2374-1634C>T), 54401207(c.2374-1926T>A), 54401208(c.2374-1927T>G), 54401226(c.2374-1945T>C), 54401286(c.2374-2005T>G), 54401396(c.2373+2115T>C), 54401409(c.2373+2102A>G), 54401622(c.2373+1889G>A), 54401628(c.2373+1883G>C), 54401704(c.2373+1807T>C), 54401721(c.2373+1790A>T), 54401734(c.2373+1777T>C), 54401864(c.2373+1647A>G), 54401890(c.2373+1621G>A), 54401926(c.2373+1585A>G), 54402031(c.2373+1480C>T), 54402159(c.2373+1352T>C), 54402177(c.2373+1334G>A), 54402288(c.2373+1223G>C), 54402350(c.2373+1161A>G), 54402444(c.2373+1067T>C), 54402451(c.2373+1060A>T), 54402483(c.2373+1028T>C), 54402544(c.2373+967T>C), 54402601(c.2373+910T>C), 54402603(c.2373+908A>G), 54402658(c.2373+853A>T), 54402660(c.2373+851T>G), 54402719(c.2373+792G>A), 54402838(c.2373+673T>A), 54402920(c.2373+591A>G), 54402957(c.2373+554G>T), 54403146(c.2373+365T>C), 54403216(c.2373+295T>A), 54403400(c.2373+111C>T), 54403697(c.2249-62T>G), 54403745(c.2249-110G>T), 54404454(c.2248+526A>G), 54404469(c.2248+511A>C), 54404484(c.2248+496T>C), 54404492(c.2248+488C>G), 54404501(c.2248+479T>C), 54404522(c.2248+458C>A), 54404547(c.2248+433C>T), 54404602(c.2248+378T>C), 54405266(c.2058-96A>G), 54405472(c.2058-302T>C), 54405507(c.2057+330T>C), 54405511(c.2057+326A>G), 54405645(c.2057+192C>T), 54405652(c.2057+185A>G), 54405663(c.2057+174A>G), 54405692(c.2057+145A>T), 54405728(c.2057+109T>C), 54405763(c.2057+74C>T), 54405766(c.2057+71G>A), 54410470(c.1820-4396T>C), 54410501(c.1820-4427T>C), 54410608(c.1820-4534T>C), 54414369(c.1819+1515T>C), 54414376(c.1819+1508T>A), 54414409(c.1819+1475G>A), 54414412(c.1819+1472T>C), 54414607(c.1819+1277C>G), 54414824(c.1819+1060T>A), 54414939(c.1819+945A>G), 54415082(c.1819+802A>G), 54415089(c.1819+795G>A), 54415143(c.1819+741T>A), 54415256(c.1819+628T>C), 54415265(c.1819+619G>A), 54415347(c.1819+537T>C), 54415355(c.1819+529C>T), 54415356(c.1819+528T>A), 54415555(c.1819+329A>G), 54415659(c.1819+225A>C), 54415720(c.1819+164A>T), 54415844(c.1819+40C>T), 54416140(c.1684-121T>C), 54416160(c.1684-141A>C), 54416180(c.1684-161G>C), 54416181(c.1684-162T>A), 54416208(c.1684-189C>T), 54416397(c.1683+325G>C), 54416513(c.1683+209G>A), 54417364(c.1581+295T>A), 54417571(c.1581+88T>A), 54417613(c.1581+46T>C), 54417878(c.1379-17A>G), 54418079(c.1379-218T>G), 54418083(c.1379-222T>G), 54418100(c.1379-239C>T), 54418205(c.1379-344A>G), 54418240(c.1379-379T>C), 54418307(c.1379-446T>C), 54418398(c.1379-537C>G), 54418465(c.1379-604C>T), 54418728(c.1378+655C>T), 54418990(c.1378+393A>G), 54419211(c.1378+172A>T), 54419313(c.1378+70C>T), 54419354(c.1378+29G>C), 54419376(c.1378+7T>C), 54419583(c.1207-29T>C), 54419603(c.1207-49T>C), 54419688(c.1207-134T>C), 54419799(c.1207-245C>T), 54419910(c.1207-356T>A), 54419959(c.1207-405A>C), 54420009(c.1206+387G>A), 54420030(c.1206+366A>T), 54420048(c.1206+348T>A), 54420241(c.1206+155T>A), 54420260(c.1206+136G>A), 54420289(c.1206+107T>C), 54420343(c.1206+53T>C), 54420369(c.1206+27T>C), 54420529(c.1103-30A>T), 54420534(c.1103-35C>T), 54420537(c.1103-38A>G), 54420581(c.1103-82A>C), 54420582(c.1103-83T>C), 54420749(c.1103-250T>C), 54420795(c.1103-296T>G), 54420851(c.1103-352T>A), 54421000(c.1103-501C>A), 54421266(c.1103-767T>C), 54421640(c.1103-1141T>G), 54421729(c.1103-1230G>A), 54421816(c.1103-1317T>C), 54421842(c.1103-1343A>C), 54421887(c.1103-1388T>A), 54422080(c.1102+1421G>C), 54422086(c.1102+1415A>C), 54422275(c.1102+1226G>C), 54422452(c.1102+1049G>A), 54422487(c.1102+1014C>A), 54422558(c.1102+943G>T), 54422593(c.1102+908T>G), 54422752(c.1102+749G>T), 54422859(c.1102+642T>C), 54423192(c.1102+309G>A), 54423215(c.1102+286C>A), 54423605(c.1030-32T>C), 54423631(c.1030-58A>T), 54423833(c.1029+176C>T), 54423883(c.1029+126A>T), 54423896(c.1029+113A>G), 54423909(c.1029+100G>T), 54423979(c.1029+30A>G), 54424428(c.882-272C>T), 54424522(c.882-366C>T), 54424523(c.882-367G>A), 54424550(c.882-394G>A), 54424579(c.882-423G>A), 54424583(c.882-427G>A), 54424628(c.882-472C>T), 54424711(c.882-555C>T), 54424890(c.882-734T>A), 54424986(c.882-830T>C), 54425042(c.882-886G>A), 54425193(c.882-1037A>G), 54425276(c.882-1120G>A), 54425382(c.882-1226A>G), 54425397(c.882-1241T>A), 54425444(c.882-1288C>T), 54425456(c.882-1300G>A), 54425482(c.882-1326G>A), 54425533(c.882-1377A>T), 54425702(c.882-1546G>A), 54425847(c.881+1553A>G), 54425854(c.881+1546C>T), 54425871(c.881+1529A>G), 54425921(c.881+1479C>T), 54425954(c.881+1446T>C), 54426036(c.881+1364G>A), 54426055(c.881+1345G>T), 54426060(c.881+1340G>A), 54426136(c.881+1264G>A), 54426151(c.881+1249A>G), 54426208(c.881+1192C>T), 54426581(c.881+819C>T), 54426619(c.881+781A>G), 54426683(c.881+717C>T), 54426728(c.881+672C>T), 54426739(c.881+661C>T), 54426755(c.881+645C>T), 54426784(c.881+616A>G), 54426798(c.881+602G>T), 54426814(c.881+586G>A), 54426861(c.881+539T>C), 54426904(c.881+496A>G), 54426943(c.881+457G>T), 54426946(c.881+454C>T), 54427039(c.881+361G>A), 54427064(c.881+336G>C), 54427084(c.881+316A>C), 54427174(c.881+226G>C), 54427236(c.881+164G>A), 54427239(c.881+161T>G), 54427336(c.881+64A>G), 54427572(c.716-7C>T), 54427832(c.716-267A>G), 54427914(c.716-349A>G), 54427928(c.716-363A>C), 54427965(c.716-400C>A), 54427976(c.716-411G>A), 54427987(c.716-422G>A), 54428130(c.716-565T>C), 54428251(c.715+511A>G), 54428316(c.715+446T>C), 54428509(c.715+253A>G), 54428516(c.715+246T>C), 54428554(c.715+208C>T), 54428661(c.715+101C>T), 54428684(c.715+78A>G), 54428695(c.715+67G>T), 54428696(c.715+66T>A), 54429201(c.524-248C>T), 54429229(c.524-276T>G), 54429533(c.524-580T>C), 54429609(c.524-656T>G), 54429637(c.524-684T>C), 54429653(c.524-700G>C), 54429774(c.523+725A>T), 54429788(c.523+711T>C), 54430287(c.523+212A>G), 54430651(c.400-29G>C), 54430701(c.400-79C>T), 54430733(c.400-111C>T), 54430744(c.400-122A>G), 54430771(c.400-149C>T), 54430772(c.400-150A>G), 54430782(c.400-160C>A), 54430819(c.400-197G>A), 54430873(c.400-251T>C), 54431158(c.400-536A>G), 54431165(c.400-543A>G), 54431166(c.400-544C>T), 54431253(c.400-631G>A), 54431262(c.400-640T>C), 54431993(c.400-1371C>T), 54432025(c.400-1403T>G), 54432065(c.400-1443T>C), 54432304(c.400-1682C>T), 54432506(c.399+1548G>T), 54432732(c.399+1322G>A), 54433004(c.399+1050A>G), 54433035(c.399+1019G>A), 54433078(c.399+976T>C), 54433101(c.399+953C>T), 54433297(c.399+757C>G), 54433445(c.399+609T>C), 54433666(c.399+388G>C), 54433697(c.399+357A>T), 54433773(c.399+281A>C), 54433797(c.399+257T>C), 54433851(c.399+203C>T), 54435567(c.215-1329A>G), 54435589(c.215-1351G>A), 54435651(c.215-1413T>C), 54435788(c.215-1550T>C), 54435837(c.215-1599A>G), 54435907(c.215-1669T>C), 54436188(c.214+1644T>C), 54436190(c.214+1642T>C), 54436244(c.214+1588A>G), 54436328(c.214+1504A>G), 54436488(c.214+1344C>A), 54436567(c.214+1265C>G), 54436583(c.214+1249G>A), 54436590(c.214+1242T>C), 54436779(c.214+1053C>T), 54436950(c.214+882C>T), 54437053(c.214+779A>G), 54437062(c.214+770G>A), 54437067(c.214+765A>G), 54437136(c.214+696T>C), 54437171(c.214+661A>T), 54437459(c.214+373T>C), 54437524(c.214+308A>T), 54437774(c.214+58A>C), 54438283(c.103-340T>C), 54438332(c.103-389G>T), 54438566(c.102+247G>C), 54438684(c.102+129G>C), 54438748(c.102+65C>T), 54438762(c.102+51A>C), 54438776(c.102+37T>G), -1kb 54394470(c.3410T>G), 54394499(c.3381A>G), 54394565(c.3315C>T), 54394841(c.3039T>C), 54394967(c.2913G>A), 54395000(c.2880A>C), 54395074(c.2806G>A), 54395416(c.2464G>C), 54395537(c.2343C>T), 54395770(c.2110C>T), 54395796(c.2084C>T), 54395809(c.*2071A>G),
Insertions	+1kb 54439364 (c.-451_-450insA), 54440682 (c.-1769_-1768insGAAA), 54443630 (c.-4717_-4716insG), 5'UTR CDS 3'UTR INTRON 54398597 (c.2526+531_2526+532insTTTG), 54399000 (c.2526+128dupA), 54400137 (c.2374-857dupT), 54400140 (c.2374-860dupT), 54400407 (c.2374-1127_2374-1126insA), 54401560 (c.2373+1950_2373+1951insTGG), 54402071 (c.2373+1439dupA), 54402073 (c.2373+1437_2373+1438insA), 54402525 (c.2373+982_2373+985dupATTT), 54404826 (c.2248+153_2248+154insTATA), 54405266 (c.2058-97_2058-96insG), 54410170 (c.1820-4097dupA), 54414474 (c.1819+1409_1819+1410insC), 54416175 (c.1684-157_1684-156insTC), 54416538 (c.1683+183_1683+184insTGA), 54418048 (c.1379-188_1379-187insT), 54418685 (c.1378+691_1378+697dupGTGAGAA), 54420052 (c.1206+343_1206+344insAC), 54422619 (c.1102+881_1102+882insGG), 54423584 (c.1030-12_1030-11insTTC), 54423664 (c.1030-92_1030-91insT), 54425685 (c.882-1530_882-1529insGA), 54428428 (c.715+333_715+334insCACT), 54428988 (c.524-36_524-35insA), 54429060 (c.524-108_524-107insACA), 54429258 (c.524-306dupA), 54430093 (c.523+402_523+405dupCTTG), 54431558 (c.400-937dupT), 54432124 (c.400-1503_400-1502insAGAATA), 54433521 (c.399+532_399+533insTCT), 54437426 (c.214+405_214+406insT), -1kb 54394322 (c.3557_3558insG), 54395281 (c.2598_2599insGACC),
Deletions	+1kb 54440038 (c.-1125delG), 5'UTR CDS 3'UTR 54397274 (c.605delT), INTRON 54400095 (c.2374-821_2374-815delTTGATCT), 54401082 (c.2374-1803_2374-1802delCG), 54401176 (c.2374-1897_2374-1896delCA), 54401972 (c.2373+1537_2373+1538delGT), 54401975 (c.2373+1534_2373+1535delTG), 54402109 (c.2373+1401delG), 54403793 (c.2249-160_2249-159delAA), 54410253 (c.1820-4180delT), 54411639 (c.1819+4242_1819+4244delTTT), 54414891 (c.1819+985_1819+992delGTATGTAT), 54415575 (c.1819+303_1819+308delTTTTTT), 54415591 (c.1819+292delT), 54415595 (c.1819+288delT), 54416251 (c.1684-234_1684-233delTC), 54416254 (c.1684-237_1684-236delCT), 54419195 (c.1378+181_1378+187delCCCTTCA), 54419326 (c.1378+51_1378+56delAGAGTT), 54420093 (c.1206+299_1206+302delTTCT), 54420106 (c.1206+286_1206+289delTTTC), 54422544 (c.1102+955_1102+956delCC), 54427668 (c.716-104delT), 54427863 (c.716-299delT), 54427914 (c.716-350delT), 54427919 (c.716-355delT), 54428286 (c.715+472_715+475delCTTG), 54429595 (c.524-643delT), 54429971 (c.523+524_523+527delCAGT), 54430835 (c.400-218_400-214delGAAAT), 54431187 (c.400-570_400-566delATAAT), 54431543 (c.400-924_400-922delAAA), 54431737 (c.400-1116delT), 54432377 (c.399+1676delT), 54435273 (c.215-1039_215-1036delTCTT), 54435510 (c.215-1275_215-1273delATA), 54437041 (c.214+785_214+790delATGGGG), 54437146 (c.214+677_214+685delAACAGTCAG), 54437254 (c.214+577delA), 54437497 (c.214+331_214+334delTAAA), 54438351 (c.103-410_103-409delAA), -1kb 54393847 (c.4032delA),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	7
non-synonymous num	0
synonymous substitutions	54397994 (p.Glu845Glu), 54405950 (p.Ser648Ser), 54419501 (p.Tyr420Tyr), 54419525 (p.Asn412Asn), 54420426 (p.Leu392Leu), 54424138 (p.Asn300Asn), 54437878 (p.Ser56Ser),
non-synonymous substitutions
B6 transcript (ENSMUST00000041638)	MSGFSPELIDYLEGKISFEEFERRREERKTREKKSVQEKGKSSPKENPDDSEVPSSSGID SAKSQDKDANEGETSDGVSKSVHKVFASMLGETEDDEEEEEEEEEEETAEQPTAGDVFVL EMVLNRETKKMMKEKRPRSKLPRALRGLMGEANIRFARGEHEEAILMCMEIIRQAPLAYE PFSTLAMIYEDQGDMEKSLQFELIAAHLNPSDTEEWVRLAEMSLEQDNIKQAIFCYTKAL KYEPTNVRYLWERSSLYEQMGDHKMAMDGYRRILNLLSPSDGERFMQLARDMAKSYYEAN DSASAINIIEEAFSKHQGLVSMEDVNIAAELYISNKQYDKALEVITDFSGIILEKETLEE GTSEENKAAETVTCSIPDSVPIDITVKLMVCLVHLNILEPLNPLLTTLVEQNPEDMGDLY LDVAEAFLDVGEYNSALPLLSALVCSERYNLAVVWLRHAECLKALGYMERAAESYSKVVD LAPLHLDARISLSILQQQLGRPEKALEALEPMYDPDTLAQDANAAQQELKLLLHRSTLLF SQGKMYGYLDTLLTMLAMLLKVAMNRAQVCLISSSKSGERHLYLIKVSRDKISDNNEQET SNYDAKAIFAVLTSVLPKEDWWNLLLKAIYTLSDLARFQEAELLVDSSLEYYSFYDDRQK RKELEYFGLSAAILDKNFRKAYDYIRVMVMENVNKPQLWNIFNQVTMHSQDVRHHRFCLR LMLKNPDNHALCVLNGHNAFVSGSFKHALGQYVQAFRAYPSEPLYNLCIGLTFIHMASQK YVLKRHALTVQGFSFLNRYLSIRGPCQESFYNLGRGLHQLGLTHLAIHYYQKALALPPLV VEGIEVDQLDLRRDIAYNMSLIYQSSGNTAMAQKLLYTYCVI*
MSMv4 transcript	MSGFSPELIDYLEGKISFEEFERRREERKTREKKSVQEKGKSSPKENPDDSEVPSSSGID SAKSQDKDANEGETSDGVSKSVHKVFASMLGETEDDEEEEEEEEEEETAEQPTAGDVFVL EMVLNRETKKMMKEKRPRSKLPRALRGLMGEANIRFARGEHEEAILMCMEIIRQAPLAYE PFSTLAMIYEDQGDMEKSLQFELIAAHLNPSDTEEWVRLAEMSLEQDNIKQAIFCYTKAL KYEPTNVRYLWERSSLYEQMGDHKMAMDGYRRILNLLSPSDGERFMQLARDMAKSYYEAN DSASAINIIEEAFSKHQGLVSMEDVNIAAELYISNKQYDKALEVITDFSGIILEKETLEE GTSEENKAAETVTCSIPDSVPIDITVKLMVCLVHLNILEPLNPLLTTLVEQNPEDMGDLY LDVAEAFLDVGEYNSALPLLSALVCSERYNLAVVWLRHAECLKALGYMERAAESYSKVVD LAPLHLDARISLSILQQQLGRPEKALEALEPMYDPDTLAQDANAAQQELKLLLHRSTLLF SQGKMYGYLDTLLTMLAMLLKVAMNRAQVCLISSSKSGERHLYLIKVSRDKISDNNEQET SNYDAKAIFAVLTSVLPKEDWWNLLLKAIYTLSDLARFQEAELLVDSSLEYYSFYDDRQK RKELEYFGLSAAILDKNFRKAYDYIRVMVMENVNKPQLWNIFNQVTMHSQDVRHHRFCLR LMLKNPDNHALCVLNGHNAFVSGSFKHALGQYVQAFRAYPSEPLYNLCIGLTFIHMASQK YVLKRHALTVQGFSFLNRYLSIRGPCQESFYNLGRGLHQLGLTHLAIHYYQKALALPPLV VEGIEVDQLDLRRDIAYNMSLIYQSSGNTAMAQKLLYTYCVI*
homology	100.00 (883 / 883)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Gtf3c3 (ENSMUSG00000041303)
Transcript ID	ENSMUST00000041638


..........AAAGAAATAGTTATAATACAAGATAAAATGCAAATCACAAGAGCTCCTAG
GAGTTGAAAATAATCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCT
CACTCACTCACTTTGACCCCTCTCTTCCATCTCTCTCCCCTCAAGTCCCACCTCAAGTCT
TTCCACTTCAGGTGTTGCCCTTTTTCATGTTACAAGTGTTCTATTACCCTCCCCACACCT
CTCCCTTTTTTTCCTCTCATAGATTCCTAAGGATTATTTTGAGAGATGTATGTAACAGAT
ATACAGTAGACGCCCTATAGGAAGAGTTAGAATCCCTTTAAAAGTTTGAGAGCAGCCGAG
CGTGGTGGGGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAG
TTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAAC
CCTGTCTCGAAAAACAAAAAACAAAACAAAACAACAACAAAAAAGTTTATGAATACTTGG
GACATAAAAGTTGATTGACATTAGAGATAGAAACCCAGGCAAACGCTCTGCCACTGTGCT
GCATCCCCAGATCAAAAGTCTCCTGTAGAGATGGTTCAGTGGTTAAGAACACTGACTGCT
CTTCTGGAGGTCCTAAGTTCAATTCCCAGCAACCACATTGTGGCTCACAGCCATCTGTAA
TGGGATCTGATGCCTTCTTCTGGTGTGTCTGAAGACAGTGTACTCCTATACATAAAATAA
GCAAGCAAACAAACAAACAAACTAATACATACATCTTTAAAAAAAAAAAAGGCTCCTCTA
GCTGGTAGTTTAAGGGAGTCTGGCGCTTGAAAGATGCATTTGGACACTCCCTTGCCTGTG
GGAAGAGGCCTGGGGCCTAGAGCGCAGGCGGAACCAGAGTGCGCGGCCGCGGCGCAGGCC
GGGAAGGTTTCTAGGGCGGACGCTGGTCCGGTCTCTCCTAGGCGTCCTAC
AGAGCCTGGGAGTGCTGCAGCTTCCCTGGCCCGCTGCGCAGCGTCGGCCCTGCAGACATGTCGGGGTTCAGCCCGGAACTTATCGACTACCTGGAAGGGAAAATCTCCTTTGAAGAGTTCGAAAGGCGGAGAGAAGAGAGAAAAACCCGAGAGAAGAAA
GTGAGCCGCTGGGCCCCCGGTGCTC..........GGAACTGTTTAATTCCCAATCACAG
AGTGTTCAGGAAAAAGGAAAATCATCACCCAAAGAAAACCCAGATGACTCCGAAGTTCCATCCTCGTCAGGAATTGACTCTGCCAAATCCCAGGACAAAGACGCCAATGAAG
GTATGTTACTGCTGGCTTTAAATGA..........AAAACCTCATTGTACCTTTCCTTAG
GAGAAACATCAGATGGGGTGAGTAAGTCAGTTCACAAAGTCTTTGCTTCCATGCTTGGAGAGACTGAAGATGATGAAGAGGAGGAAGAAGAGGAGGAGGAGGAAGAAACAGCAGAGCAACCCACTGCAGGCGATGTATTTGTGTTGGAGATGGTTCTCAACCGTGAAACCAAGAAAATGATGAAA
GTAAGCTGTTAAATATTTTATATAA..........TCCATTTTGTTTTCTTTCTGGACAG
GAGAAGAGGCCTCGGAGTAAACTCCCCAGAGCCCTGAGAGGTCTCATGGGTGAAGCCAATATTCGCTTTGCTAGAGGAGAACATGAAGAAGCCATATTGATGTGCATGGAAATCATAAGACAAG
GTGTTTTCTGCGTGGACTTCATTGA..........TTTTTTGTTATTTTTATTATTATAG
CTCCTTTGGCTTATGAGCCATTCTCTACACTTGCCATGATATACGAGGATCAAGGTGACATGGAGAAATCATTGCAGTTTGAGTTGATTGCTGCACATTTAAATCCCAGTGACACAGAAGAATGGGTTAGGCTGGCAGAAATGTCTCTGGAACAAGATAACATTAAGCAGGCTATTTTTTGCTATACAAAAG
GTAATGACATTTTTCTTGTGTGAAT..........TTATCTCTTTGCTTTTTCTTTCTAG
CTCTTAAATATGAACCTACTAATGTCCGTTACCTGTGGGAGAGATCAAGCCTTTATGAACAGATGGGTGATCATAAAATGGCCATGGATGGCTATAGGCGCATTTTAAATCTTTTGTCTCCATCTGATGGAGAACGTTTTATGCAGTTGGCTAGAGATATGGCAAA
GTAAGTTTGAAGTGAAACATATGTA..........CACTCACCTTCCACTCCCTTCTTAG
GAGTTACTATGAAGCCAACGACAGCGCTTCAGCTATAAACATAATTGAAGAAGCTTTCTCAAAACATCAAGGCTTAGTCTCCATGGAAGATGTTAACATAGCAGCTGAATTATATATTTCCAACAAGCAGTATGACAAAGCTTTGGAG
GTAGGAATGTTCGTGTGTGGTTGTC..........TTTTCCATTTTTTTCTTTTTTTTAG
GTAATTACAGATTTTTCTGGAATTATCCTAGAAAAGGAAACTTTGGAAGAAGGCACCTCAGAAGAGAATAAAG
GTTGTAGTTAACTTCATGCAGGAAC..........AATACCTTGTCTGATGTTCACCCAG
CTGCTGAGACGGTTACCTGCTCTATACCTGACAGCGTGCCAATAGACATCACGGTGAAGCTGATGGTCTGCCTCGTACATCTCAACATCCTTGAGCCCCTCAAT
GTAAGTAGTACTGACAGCTGCACCT..........CCTCTGTTTTTTATTTGGAGTTTAG
CCTCTTCTGACAACACTGGTAGAACAGAATCCTGAAGATATGGGTGACCTCTACCTTGATGTTGCTGAAGCTTTTCTGGATGTTGGTGAATATAATTCTGCCCTTCCCCTGCTCAGTGCCCTGGTTTGCTCTGAAAGATACAACCTCGCAGTGGTTTGGCTTCGGCATGCAG
GTAATACGTTTGTTTTGGAAGAGAA..........AATTAAATGTCTTTTAACATCTTAG
AATGTTTAAAGGCCTTGGGCTACATGGAACGTGCTGCTGAAAGCTACAGTAAAGTGGTTGATCTGGCTCCACTCCATTTGGATGCAAGAATTTCACTTTCCATCCTGCAGCAGCAGCTAGGCCGTCCTGAGAAAGCTCTGGAAGCGCTGGAACCCATGTATGATCCAGACACCTTAGCCCAAGATGCCAATGCTGCACAGCAG
GTAAGCTATCACATGGGGGCTCCTC..........TTCTGTCATGTGCTTGTTCATGCAG
GAACTGAAATTACTGCTCCATCGTTCTACTCTATTGTTTTCACAAGGCAAAATGTACGGCTATCTGGATACCTTGCTAACCATGCTCGCCATGCTTTTAAAG
GTGGGAGGCCACTTTCTAGTAGCCT..........AGGCATCTTACCATCTTTTATTCAG
GTTGCGATGAATAGAGCCCAAGTTTGTTTGATATCTAGTTCCAAATCTGGAGAAAGACATCTCTACCTTATTAAAGTGTCAAGAGATAAAATATCAGACAACAACGAGCAGGAAACATCAAATTATGATGCAAAAG
GTAACTGTCTCATTTGCTTTATGAA..........TTGGTTTTCATTTGTCTCATTTTAG
CAATATTTGCTGTACTCACGAGTGTCTTGCCGAAAGAAGACTGGTGGAACCTTCTCTTAAAGGCCATATATACCTTGAGTGATTTGGCTCGGTTCCAAGAAGCTGAATTGCTGGTAGATTCTTCTCTGGAATATTATTCATTTTATGACGACAGACAAAAACGCAAAGAACTAGAATACTTTGGTCTTTCTGCTGCTATTCTGGACAAAAATTTCAGAAAAGCATATGACTATATCAG
GTAACTTTCTAATCAGAAATCCTAT..........TCACACACACTTTCTGCTGTTTTAG
GGTAATGGTAATGGAAAATGTCAATAAGCCCCAGCTGTGGAATATTTTCAATCAAGTTACCATGCACTCCCAAGATGTAAGACATCATCGATTCTGTCTCCGTCTGATGCTGAAAAACCCAGATAATCATGCTCTGTGCGTTTTAAATGGACACAATGCATTTGTATCTGGTAGTTTCAAACATGCACTTG
GTAAGTGTGCTGCCACCTGACTGTT..........TCATCTGGTCTTGCTTACCTTCCAG
GACAGTATGTCCAAGCCTTCCGTGCCTATCCCAGTGAGCCGCTCTACAATCTCTGCATAGGCCTCACCTTTATTCACATGGCATCTCAGAAGTATGTGCTGAAGAGACATGCTCTGACTGTGCAG
GTAATGCATTTGGTTCTACCAGCTT..........TCAGTCATTCTTTTCTCCTTGGTAG
GGCTTTTCCTTCCTTAATCGATACCTCAGCATCCGTGGACCTTGCCAGGAATCTTTCTACAATTTGGGCCGTGGCCTTCATCAGCTGGGGCTGACACACCTTGCAATCCACTATTACCAGAAGGCTCTGGCACTCCCTCCACTTGTGGTCGAG
GTAATTTTAGAAACTTAGATGTCAT..........TAAAATATTTGTCTTTTTCTTCTAG
GGTATAGAGGTTGACCAGTTAGATTTACGAAGAGATATTGCCTACAACATGTCTCTCATTTATCAGAGCAGTGGGAACACTGCAATGGCTCAAAAGCTTTTGTATACCTACTGTGTCATATAAGCAGTGTAATTTATAAGACGATGTATGGACCAGTATCTTCTATCGGGACCTCATTGTTCTTGATGATAAAAATGGTACTGTCATCACTGCTTGCTACCATTACAACTGCTTTGAAGCAGGGGATGTAGCTCAGCTGTAGACTGCCTGCCTGCTTCATATGTACAAGGCCCCAGATTCAAGCCTTTGGAAAATTGAAACACGGCTTTTACTCTGGAATATATGCAAAGTTGCTATTCCTATGAGAATGTACATAATATTCTTTGTTGTTAGCATTCTACAATAAAATTATTCCAAACACTGAAATGGACAATATTGCCTTCTGAATCAGTTGGAATGGAACATACTATTTTTCTACTTAATATCTGCTAAACTCCTGTGAACCAGATGTTTTGACAGGTGCTGGTAATATTGGAGACAGTGTGGTTTGTCCTTCAGGCATTACAGAGTACACTACTGAGATAGTCACCACTGAGGACAATTATTTATGTATTTATTTTCTTGTACTATATATTGAAACCAGGACCTTGTACTACTATGCTAAGCAAGTGATATACCACTGAGCTACAGCCTCAGCCTGCACAGTTTTGTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTGTTTTGCTTTGTTTGTTTGTTGAGACAGGGTTTCTCTTAGTAGTCTTGATTATCCTGGAATTTACTTTGTAGACCAGGCTGGCCTTGACCTCAGGCCTACCTCTGCCTTCCAAGTGCCAGGATTAAAGGCGTGTGCCACCATCACTCAGTTGCACAGTTCTTAAATATAAAGTGTGAACATGTATTTCTTTGAAAGAAATATTTGTTCCATTTATATATGGCACCATTTCTTATAGCCATTACTGTCCCATAGTGCAATGTTCAAATACACATCAAAGGAAGTTGGACTCTTTTTTTTTTTTTTTTTTTTACTTCTCTGACTTTTGGCTAAGCTCAAGTTCAGAACGCTGCCTTGGAGGAAGTAATGAGACGGCTTATTCTGAGCTAAAAATGAGTGACATCTGCCCTGAAGCAACCCAAGTTTTTGTGGATAACGTGTCCCATCATTAAAGAGGTTCTACATACTTTTATAGCCAAACAAAGTCCTAAAACGAGATCCTTGACAAATGTCTTCCTGGGAGTTTAGATGGCAAAGCTCTGCAGAGCGAGAAGCTGTGCCTCATCCAGCTTTTATCTCAGATCATCCAGAGATCCGATGAGCAATGCACGCACGAGATGCTTGCGGAAGTTGGACTCTTATGGTAATATAATTACTTATATTACTTTGTTAGTCAGCACCTAACAAAATTATTTAAGATGATTTTATGGTGGGAAGACAAATAATTGACTAATTTGACATTCATCTGTGGGTATGTTAATTTCAGATAATAAACCTTGGAATCAGGCTTAATTCAAAGCCCAATGTTCCAAGGCATAACAACCTTGGCTTCCCACTGGAGAAAAGGGATGGTCGTGTTCAGTTACTGTCATGCTTTCCAGTTCAAGAAAGTTTAGTACTATCAGAATACTAAAGAGGGGGAAGTTGGATATATGGAATGAAGTGTTGACAGGGTTTAAAGATATTTTACTTCATTATGTGTTCTTGAATCTCAGATTGAAAAAAAACATTTGCTAGATAGACTGTTTCTTGGAAAATAACTGCTATAATGTATGATTGATTCTAAGACTGATCCAGTTGTAAAGGAAAACCATGTGAGACCGAGGATCAAAATACAATGGCGACTTTAGGAGTTCTTCCCACTCTTTATACTGTATACTCAGCTCCCCAGTTGAAAAGCAGAACTTGTGAGTAGTTAGTAAATGTATCTTGTATTCTGTATGTTTCTATATGTAAATAAATCCTATTTTTATAATTGA
CATTTCACCTTTTAAACTTTTCATTTCATGCCATTTAACAATTGTGATGAAGCTAACTAG
TTGTGATTGATAAATTTAGGTCTTGGCATCCTGTGTGAGCATTTTGTGTGTAGTTTTTCC
TGTGGACTAAGTTCTCTGAGTAGTAAAGTAGAGGAAAGACAGATAGAGTCTGTCTCTATG
TCAGTCGTTACTGTGGTCAGCATCTAATAAAATGATGTTGGCTGAGCTAGGGCTGCATCT
CAGTTGACAGAGCCTACCTAGGGTGCACAGAGTCAGAACCAGATGTGGACACAGCCTGTA
GAGGAGAACTTGAGGGTCATGCTTGGCTACAGCATAGAACTAAGTTCAAAGCACTTAGTT
ACATCAACTACCTGTCTCGAAAAAATTGAAACAAAGCAGTTATTGGTAGGAACACAAGTA
ATGTAATCTTTTACTGTTCACTTGTTTCTTTAGCTATAGACATAGATAGGCCTGGTTTTT
CATATCTGCTAAGCAATATTGGTAGAAACAAGTCTTAACAATTCTCTAAGGGAAAAAAAT
AACTGTATTGTGTGTTTATTTAACAATAAAAATCACAGCTAGAGCCACGGAGATGGCTCA
GTGAAAGTGCTTGCCGTAATCACTTACCCATGTAAGCCTGATGGTGGTGTCTCTCTTATG
GTGATGAAGAAGGCAGAGATGAGAAGTGGGAGCTTGTGAGCCACAGACCAACCAGAAAGA
CCCTGCTTCAACAAGGTAGAAGATGAGAACTAATTCCCCAAAGTTGTCCTTTGATCTCCA
AGTGTGCCATGGCACATGCATGCCTGTAAACAGACAAAACTGCATCACATAATTTTAAAC
AAGCTGCCATTTCTTGAATGTTACTGTTCTACTCTCCATTAAGTTCTCTTGAGATAGATA
CATGGCTTCCAGTTTTGTGGAAGGCAGACATTACTAGTTGTTATTGTTTCCCTCTCCACA
GAGGTTTAAAACCCTGGCCAAGAGTCGTTACTCCTGCCCA..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........AAAGAAATAGTTATAATACAAGATAAAATGCAAATCACAAGAGCTCCTAG GAGTTGAAAATAATCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCT CACTCACTCACTTTGACCCCTCTCTTCCATCTCTCTCCCCTCAAGTCCCACCTCAAGTCT TTCCACTTCAGGTGTTGCCCTTTTTCATGTTACAAGTGTTCTATTACCCTCCCCACACCT CTCCCTTTTTTTCCTCTCATAGATTCCTAAGGATTATTTTGAGAGATGTATGTAACAGAT ATACAGTAGACGCCCTATAGGAAGAGTTAGAATCCCTTTAAAAGTTTGAGAGCAGCCGAG CGTGGTGGGGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAG TTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAAC CCTGTCTCGAAAAACAAAAAACAAAACAAAACAACAACAAAAAAGTTTATGAATACTTGG GACATAAAAGTTGATTGACATTAGAGATAGAAACCCAGGCAAACGCTCTGCCACTGTGCT GCATCCCCAGATCAAAAGTCTCCTGTAGAGATGGTTCAGTGGTTAAGAACACTGACTGCT CTTCTGGAGGTCCTAAGTTCAATTCCCAGCAACCACATTGTGGCTCACAGCCATCTGTAA TGGGATCTGATGCCTTCTTCTGGTGTGTCTGAAGACAGTGTACTCCTATACATAAAATAA GCAAGCAAACAAACAAACAAACTAATACATACATCTTTAAAAAAAAAAAAGGCTCCTCTA GCTGGTAGTTTAAGGGAGTCTGGCGCTTGAAAGATGCATTTGGACACTCCCTTGCCTGTG GGAAGAGGCCTGGGGCCTAGAGCGCAGGCGGAACCAGAGTGCGCGGCCGCGGCGCAGGCC GGGAAGGTTTCTAGGGCGGACGCTGGTCCGGTCTCTCCTAGGCGTCCTAC
1	EXON 1	54,438,813	54,438,971	-	0	159	AGAGCCTGGGAGTGCTGCAGCTTCCCTGGCCCGCTGCGCAGCGTCGGCCCTGCAGACATG TCGGGGTTCAGCCCGGAACTTATCGACTACCTGGAAGGGAAAATCTCCTTTGAAGAGTTC GAAAGGCGGAGAGAAGAGAGAAAAACCCGAGAGAAGAAA
	INTRON 1 - 2	54,437,944	54,438,812			869	GTGAGCCGCTGGGCCCCCGGTGCTC..........GGAACTGTTTAATTCCCAATCACAG
2	EXON 2	54,437,832	54,437,943	0	1	112	AGTGTTCAGGAAAAAGGAAAATCATCACCCAAAGAAAACCCAGATGACTCCGAAGTTCCA TCCTCGTCAGGAATTGACTCTGCCAAATCCCAGGACAAAGACGCCAATGAAG
	INTRON 2 - 3	54,434,239	54,437,831			3,593	GTATGTTACTGCTGGCTTTAAATGA..........AAAACCTCATTGTACCTTTCCTTAG
3	EXON 3	54,434,054	54,434,238	1	0	185	GAGAAACATCAGATGGGGTGAGTAAGTCAGTTCACAAAGTCTTTGCTTCCATGCTTGGAG AGACTGAAGATGATGAAGAGGAGGAAGAAGAGGAGGAGGAGGAAGAAACAGCAGAGCAAC CCACTGCAGGCGATGTATTTGTGTTGGAGATGGTTCTCAACCGTGAAACCAAGAAAATGA TGAAA
	INTRON 3 - 4	54,430,623	54,434,053			3,431	GTAAGCTGTTAAATATTTTATATAA..........TCCATTTTGTTTTCTTTCTGGACAG
4	EXON 4	54,430,499	54,430,622	0	1	124	GAGAAGAGGCCTCGGAGTAAACTCCCCAGAGCCCTGAGAGGTCTCATGGGTGAAGCCAAT ATTCGCTTTGCTAGAGGAGAACATGAAGAAGCCATATTGATGTGCATGGAAATCATAAGA CAAG
	INTRON 4 - 5	54,428,954	54,430,498			1,545	GTGTTTTCTGCGTGGACTTCATTGA..........TTTTTTGTTATTTTTATTATTATAG
5	EXON 5	54,428,762	54,428,953	1	1	192	CTCCTTTGGCTTATGAGCCATTCTCTACACTTGCCATGATATACGAGGATCAAGGTGACA TGGAGAAATCATTGCAGTTTGAGTTGATTGCTGCACATTTAAATCCCAGTGACACAGAAG AATGGGTTAGGCTGGCAGAAATGTCTCTGGAACAAGATAACATTAAGCAGGCTATTTTTT GCTATACAAAAG
	INTRON 5 - 6	54,427,566	54,428,761			1,196	GTAATGACATTTTTCTTGTGTGAAT..........TTATCTCTTTGCTTTTTCTTTCTAG
6	EXON 6	54,427,400	54,427,565	1	2	166	CTCTTAAATATGAACCTACTAATGTCCGTTACCTGTGGGAGAGATCAAGCCTTTATGAAC AGATGGGTGATCATAAAATGGCCATGGATGGCTATAGGCGCATTTTAAATCTTTTGTCTC CATCTGATGGAGAACGTTTTATGCAGTTGGCTAGAGATATGGCAAA
	INTRON 6 - 7	54,424,157	54,427,399			3,243	GTAAGTTTGAAGTGAAACATATGTA..........CACTCACCTTCCACTCCCTTCTTAG
7	EXON 7	54,424,009	54,424,156	2	0	148	GAGTTACTATGAAGCCAACGACAGCGCTTCAGCTATAAACATAATTGAAGAAGCTTTCTC AAAACATCAAGGCTTAGTCTCCATGGAAGATGTTAACATAGCAGCTGAATTATATATTTC CAACAAGCAGTATGACAAAGCTTTGGAG
	INTRON 7 - 8	54,423,574	54,424,008			435	GTAGGAATGTTCGTGTGTGGTTGTC..........TTTTCCATTTTTTTCTTTTTTTTAG
8	EXON 8	54,423,501	54,423,573	0	1	73	GTAATTACAGATTTTTCTGGAATTATCCTAGAAAAGGAAACTTTGGAAGAAGGCACCTCA GAAGAGAATAAAG
	INTRON 8 - 9	54,420,500	54,423,500			3,001	GTTGTAGTTAACTTCATGCAGGAAC..........AATACCTTGTCTGATGTTCACCCAG
9	EXON 9	54,420,396	54,420,499	1	0	104	CTGCTGAGACGGTTACCTGCTCTATACCTGACAGCGTGCCAATAGACATCACGGTGAAGC TGATGGTCTGCCTCGTACATCTCAACATCCTTGAGCCCCTCAAT
	INTRON 9 - 10	54,419,555	54,420,395			841	GTAAGTAGTACTGACAGCTGCACCT..........CCTCTGTTTTTTATTTGGAGTTTAG
10	EXON 10	54,419,383	54,419,554	0	1	172	CCTCTTCTGACAACACTGGTAGAACAGAATCCTGAAGATATGGGTGACCTCTACCTTGAT GTTGCTGAAGCTTTTCTGGATGTTGGTGAATATAATTCTGCCCTTCCCCTGCTCAGTGCC CTGGTTTGCTCTGAAAGATACAACCTCGCAGTGGTTTGGCTTCGGCATGCAG
	INTRON 10 - 11	54,417,862	54,419,382			1,521	GTAATACGTTTGTTTTGGAAGAGAA..........AATTAAATGTCTTTTAACATCTTAG
11	EXON 11	54,417,659	54,417,861	1	0	203	AATGTTTAAAGGCCTTGGGCTACATGGAACGTGCTGCTGAAAGCTACAGTAAAGTGGTTG ATCTGGCTCCACTCCATTTGGATGCAAGAATTTCACTTTCCATCCTGCAGCAGCAGCTAG GCCGTCCTGAGAAAGCTCTGGAAGCGCTGGAACCCATGTATGATCCAGACACCTTAGCCC AAGATGCCAATGCTGCACAGCAG
	INTRON 11 - 12	54,416,824	54,417,658			835	GTAAGCTATCACATGGGGGCTCCTC..........TTCTGTCATGTGCTTGTTCATGCAG
12	EXON 12	54,416,722	54,416,823	0	0	102	GAACTGAAATTACTGCTCCATCGTTCTACTCTATTGTTTTCACAAGGCAAAATGTACGGC TATCTGGATACCTTGCTAACCATGCTCGCCATGCTTTTAAAG
	INTRON 12 - 13	54,416,020	54,416,721			702	GTGGGAGGCCACTTTCTAGTAGCCT..........AGGCATCTTACCATCTTTTATTCAG
13	EXON 13	54,415,884	54,416,019	0	1	136	GTTGCGATGAATAGAGCCCAAGTTTGTTTGATATCTAGTTCCAAATCTGGAGAAAGACAT CTCTACCTTATTAAAGTGTCAAGAGATAAAATATCAGACAACAACGAGCAGGAAACATCA AATTATGATGCAAAAG
	INTRON 13 - 14	54,406,075	54,415,883			9,809	GTAACTGTCTCATTTGCTTTATGAA..........TTGGTTTTCATTTGTCTCATTTTAG
14	EXON 14	54,405,837	54,406,074	1	2	238	CAATATTTGCTGTACTCACGAGTGTCTTGCCGAAAGAAGACTGGTGGAACCTTCTCTTAA AGGCCATATATACCTTGAGTGATTTGGCTCGGTTCCAAGAAGCTGAATTGCTGGTAGATT CTTCTCTGGAATATTATTCATTTTATGACGACAGACAAAAACGCAAAGAACTAGAATACT TTGGTCTTTCTGCTGCTATTCTGGACAAAAATTTCAGAAAAGCATATGACTATATCAG
	INTRON 14 - 15	54,405,171	54,405,836			666	GTAACTTTCTAATCAGAAATCCTAT..........TCACACACACTTTCTGCTGTTTTAG
15	EXON 15	54,404,980	54,405,170	2	1	191	GGTAATGGTAATGGAAAATGTCAATAAGCCCCAGCTGTGGAATATTTTCAATCAAGTTAC CATGCACTCCCAAGATGTAAGACATCATCGATTCTGTCTCCGTCTGATGCTGAAAAACCC AGATAATCATGCTCTGTGCGTTTTAAATGGACACAATGCATTTGTATCTGGTAGTTTCAA ACATGCACTTG
	INTRON 15 - 16	54,403,636	54,404,979			1,344	GTAAGTGTGCTGCCACCTGACTGTT..........TCATCTGGTCTTGCTTACCTTCCAG
16	EXON 16	54,403,511	54,403,635	1	0	125	GACAGTATGTCCAAGCCTTCCGTGCCTATCCCAGTGAGCCGCTCTACAATCTCTGCATAG GCCTCACCTTTATTCACATGGCATCTCAGAAGTATGTGCTGAAGAGACATGCTCTGACTG TGCAG
	INTRON 16 - 17	54,399,282	54,403,510			4,229	GTAATGCATTTGGTTCTACCAGCTT..........TCAGTCATTCTTTTCTCCTTGGTAG
17	EXON 17	54,399,129	54,399,281	0	0	153	GGCTTTTCCTTCCTTAATCGATACCTCAGCATCCGTGGACCTTGCCAGGAATCTTTCTAC AATTTGGGCCGTGGCCTTCATCAGCTGGGGCTGACACACCTTGCAATCCACTATTACCAG AAGGCTCTGGCACTCCCTCCACTTGTGGTCGAG
	INTRON 17 - 18	54,398,003	54,399,128			1,126	GTAATTTTAGAAACTTAGATGTCAT..........TAAAATATTTGTCTTTTTCTTCTAG
18	EXON 18	54,396,004	54,398,002	0	-	1,999	GGTATAGAGGTTGACCAGTTAGATTTACGAAGAGATATTGCCTACAACATGTCTCTCATT TATCAGAGCAGTGGGAACACTGCAATGGCTCAAAAGCTTTTGTATACCTACTGTGTCATA TAAGCAGTGTAATTTATAAGACGATGTATGGACCAGTATCTTCTATCGGGACCTCATTGT TCTTGATGATAAAAATGGTACTGTCATCACTGCTTGCTACCATTACAACTGCTTTGAAGC AGGGGATGTAGCTCAGCTGTAGACTGCCTGCCTGCTTCATATGTACAAGGCCCCAGATTC AAGCCTTTGGAAAATTGAAACACGGCTTTTACTCTGGAATATATGCAAAGTTGCTATTCC TATGAGAATGTACATAATATTCTTTGTTGTTAGCATTCTACAATAAAATTATTCCAAACA CTGAAATGGACAATATTGCCTTCTGAATCAGTTGGAATGGAACATACTATTTTTCTACTT AATATCTGCTAAACTCCTGTGAACCAGATGTTTTGACAGGTGCTGGTAATATTGGAGACA GTGTGGTTTGTCCTTCAGGCATTACAGAGTACACTACTGAGATAGTCACCACTGAGGACA ATTATTTATGTATTTATTTTCTTGTACTATATATTGAAACCAGGACCTTGTACTACTATG CTAAGCAAGTGATATACCACTGAGCTACAGCCTCAGCCTGCACAGTTTTGTTTGTTTTGT TTTGTTTTGTTTTGTTTTGTTTGTTTTGCTTTGTTTGTTTGTTGAGACAGGGTTTCTCTT AGTAGTCTTGATTATCCTGGAATTTACTTTGTAGACCAGGCTGGCCTTGACCTCAGGCCT ACCTCTGCCTTCCAAGTGCCAGGATTAAAGGCGTGTGCCACCATCACTCAGTTGCACAGT TCTTAAATATAAAGTGTGAACATGTATTTCTTTGAAAGAAATATTTGTTCCATTTATATA TGGCACCATTTCTTATAGCCATTACTGTCCCATAGTGCAATGTTCAAATACACATCAAAG GAAGTTGGACTCTTTTTTTTTTTTTTTTTTTTACTTCTCTGACTTTTGGCTAAGCTCAAG TTCAGAACGCTGCCTTGGAGGAAGTAATGAGACGGCTTATTCTGAGCTAAAAATGAGTGA CATCTGCCCTGAAGCAACCCAAGTTTTTGTGGATAACGTGTCCCATCATTAAAGAGGTTC TACATACTTTTATAGCCAAACAAAGTCCTAAAACGAGATCCTTGACAAATGTCTTCCTGG GAGTTTAGATGGCAAAGCTCTGCAGAGCGAGAAGCTGTGCCTCATCCAGCTTTTATCTCA GATCATCCAGAGATCCGATGAGCAATGCACGCACGAGATGCTTGCGGAAGTTGGACTCTT ATGGTAATATAATTACTTATATTACTTTGTTAGTCAGCACCTAACAAAATTATTTAAGAT GATTTTATGGTGGGAAGACAAATAATTGACTAATTTGACATTCATCTGTGGGTATGTTAA TTTCAGATAATAAACCTTGGAATCAGGCTTAATTCAAAGCCCAATGTTCCAAGGCATAAC AACCTTGGCTTCCCACTGGAGAAAAGGGATGGTCGTGTTCAGTTACTGTCATGCTTTCCA GTTCAAGAAAGTTTAGTACTATCAGAATACTAAAGAGGGGGAAGTTGGATATATGGAATG AAGTGTTGACAGGGTTTAAAGATATTTTACTTCATTATGTGTTCTTGAATCTCAGATTGA AAAAAAACATTTGCTAGATAGACTGTTTCTTGGAAAATAACTGCTATAATGTATGATTGA TTCTAAGACTGATCCAGTTGTAAAGGAAAACCATGTGAGACCGAGGATCAAAATACAATG GCGACTTTAGGAGTTCTTCCCACTCTTTATACTGTATACTCAGCTCCCCAGTTGAAAAGC AGAACTTGTGAGTAGTTAGTAAATGTATCTTGTATTCTGTATGTTTCTATATGTAAATAA ATCCTATTTTTATAATTGA
	3' upstream sequence						CATTTCACCTTTTAAACTTTTCATTTCATGCCATTTAACAATTGTGATGAAGCTAACTAG TTGTGATTGATAAATTTAGGTCTTGGCATCCTGTGTGAGCATTTTGTGTGTAGTTTTTCC TGTGGACTAAGTTCTCTGAGTAGTAAAGTAGAGGAAAGACAGATAGAGTCTGTCTCTATG TCAGTCGTTACTGTGGTCAGCATCTAATAAAATGATGTTGGCTGAGCTAGGGCTGCATCT CAGTTGACAGAGCCTACCTAGGGTGCACAGAGTCAGAACCAGATGTGGACACAGCCTGTA GAGGAGAACTTGAGGGTCATGCTTGGCTACAGCATAGAACTAAGTTCAAAGCACTTAGTT ACATCAACTACCTGTCTCGAAAAAATTGAAACAAAGCAGTTATTGGTAGGAACACAAGTA ATGTAATCTTTTACTGTTCACTTGTTTCTTTAGCTATAGACATAGATAGGCCTGGTTTTT CATATCTGCTAAGCAATATTGGTAGAAACAAGTCTTAACAATTCTCTAAGGGAAAAAAAT AACTGTATTGTGTGTTTATTTAACAATAAAAATCACAGCTAGAGCCACGGAGATGGCTCA GTGAAAGTGCTTGCCGTAATCACTTACCCATGTAAGCCTGATGGTGGTGTCTCTCTTATG GTGATGAAGAAGGCAGAGATGAGAAGTGGGAGCTTGTGAGCCACAGACCAACCAGAAAGA CCCTGCTTCAACAAGGTAGAAGATGAGAACTAATTCCCCAAAGTTGTCCTTTGATCTCCA AGTGTGCCATGGCACATGCATGCCTGTAAACAGACAAAACTGCATCACATAATTTTAAAC AAGCTGCCATTTCTTGAATGTTACTGTTCTACTCTCCATTAAGTTCTCTTGAGATAGATA CATGGCTTCCAGTTTTGTGGAAGGCAGACATTACTAGTTGTTATTGTTTCCCTCTCCACA GAGGTTTAAAACCCTGGCCAAGAGTCGTTACTCCTGCCCA..........

Sequence Detail Report

Gene Symbol (Gene ID)	Gtf3c3 (ENSMUSG00000041303)
Transcript ID	ENSMUST00000041638

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 883 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information