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Target CDS Information

Gene Symbol (Gene ID) Atp6v1h (ENSMUSG00000033793)
Cross Reference
CCDS CCDS14808.1
EMBL AK078767, BC009154
Fantom 8030460K23
GO GO:0000221, GO:0005515, GO:0005765, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005576, ...show all
MGI_trans_name Atp6v1h-001
OTTP OTTMUSP00000068761
OTTT OTTMUST00000127490
protein_id AAH09154.1, BAC37382.1
Reactome R-MMU-162582, R-MMU-382551, R-MMU-74752, ...show all
RefSeq_mRNA NM_133826.4
RefSeq_mRNA_predicted XM_006495433
RefSeq_peptide NP_598587
RefSeq_peptide_predicted XP_006495496.1
UCSC uc007afn.1
UniParc UPI00000EA911
Uniprot/SWISSPROT Q8BVE3
Vega_transcript Atp6v1h-001, OTTMUST00000127490
Vega_translation 178625, OTTMUSP00000068761
Definition protein_id:ENSMUSP00000040756
translation:
MTKMDIRGAVDAAVPTNIIAAKAAEVRANKVNWQSYLQGQMISAEDCEFIQRFEMKRSSE
DKQEMLQTEGSQCAKTFINLMTHISKEQTVQYILTMVDDMLQENHQRVSIFFDYAKRSKS
TAWPYFLPMLNRQDPFTVHMAARIIAKLAAWGKELMEGSDLNYYFNWIKTQLSSQKLRGS
GVAVETGTISSSDSSQYVQCVAGCLQLMLRVNEYRFAWVEADGVNCIMGVLSNKCGFQLQ
YQMIFSIWLLAFSPQMCEHLRRYNIIPVLSDILQESVKEKVTRIILAAFRNFLEKSTERE
TRQEYALAMIQCKVLKQLENLEQQKYDDEDISEDIKFLLEKLGESVQDLSSFDEYSSELK
SGRLEWSPVHKSEKFWRENAVRLNEKNYELLKILTKLLEVSDDPQVLAVAAHDVGEYVRH
YPRGKRVIEQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMVHNWEYLGKQLQSEQPQTAA
ARS

Chromosome 1
Length
Position(start - end)
77,713
5,084,451 - 5,162,165
Orient to Chromosome plus
Link Location : (1:5084451-5162165)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Atp6v1h (ENSMUSG00000033793)
Transcript ID ENSMUST00000044369
Reports
substitution
cSNPs2
Insertion64
Deletion70
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num2
non-synonymous num0
synonymous substitutions 5124313 (p.Gln238Gln), 5124457 (p.Leu286Leu),
non-synonymous substitutions
B6 transcript
(ENSMUST00000044369)
MTKMDIRGAVDAAVPTNIIAAKAAEVRANKVNWQSYLQGQMISAEDCEFIQRFEMKRSSE
DKQEMLQTEGSQCAKTFINLMTHISKEQTVQYILTMVDDMLQENHQRVSIFFDYAKRSKS
TAWPYFLPMLNRQDPFTVHMAARIIAKLAAWGKELMEGSDLNYYFNWIKTQLSSQKLRGS
GVAVETGTISSSDSSQYVQCVAGCLQLMLRVNEYRFAWVEADGVNCIMGVLSNKCGFQLQ
YQMIFSIWLLAFSPQMCEHLRRYNIIPVLSDILQESVKEKVTRIILAAFRNFLEKSTERE
TRQEYALAMIQCKVLKQLENLEQQKYDDEDISEDIKFLLEKLGESVQDLSSFDEYSSELK
SGRLEWSPVHKSEKFWRENAVRLNEKNYELLKILTKLLEVSDDPQVLAVAAHDVGEYVRH
YPRGKRVIEQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMVHNWEYLGKQLQSEQPQTAA
ARS*
MSMv4 transcript
MTKMDIRGAVDAAVPTNIIAAKAAEVRANKVNWQSYLQGQMISAEDCEFIQRFEMKRSSE
DKQEMLQTEGSQCAKTFINLMTHISKEQTVQYILTMVDDMLQENHQRVSIFFDYAKRSKS
TAWPYFLPMLNRQDPFTVHMAARIIAKLAAWGKELMEGSDLNYYFNWIKTQLSSQKLRGS
GVAVETGTISSSDSSQYVQCVAGCLQLMLRVNEYRFAWVEADGVNCIMGVLSNKCGFQLQ
YQMIFSIWLLAFSPQMCEHLRRYNIIPVLSDILQESVKEKVTRIILAAFRNFLEKSTERE
TRQEYALAMIQCKVLKQLENLEQQKYDDEDISEDIKFLLEKLGESVQDLSSFDEYSSELK
SGRLEWSPVHKSEKFWRENAVRLNEKNYELLKILTKLLEVSDDPQVLAVAAHDVGEYVRH
YPRGKRVIEQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMVHNWEYLGKQLQSEQPQTAA
ARS*
homology100.00 (484 / 484)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Atp6v1h (ENSMUSG00000033793)
Transcript ID ENSMUST00000044369
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........ATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACCATGTTC
ATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAG
GAATGGATACAGAAAATGTGGTACATCTACACAATGGAGCTAAAGGGATCTGCAACCCTA
TAGGTGGATCAACATTATGAACTAACCAATATCCCGGAGCTCTTGACTCTAGCTGCATAT
GTATCAAAAGATGGCCTAGTCGGCCATCACTGCAAAGAGAGGCCCATATAAAGGCAAACT
TTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGTGGGAGAGGGTGGGTAAGGGA
GTGGGGGGGGGGAGGGTATGGGGGACTTTTGGGATAGCACTGGAAATGTAAATGAGGAAA
ATACCTAATAAAAATATTAAAAATTAAAAGATTGCCCAGCCAACTATAAAAGGGGCTGCT
TGGGACCTCCTCTCTCTCTTAAGCTCTCACCTTTCTTACTCCTCTCTAGCCCTCCTTCTC
TCCCTTCCCCCTCTCTCCACTTGGCTATGGCCGGCCCCTCTCTTTCTTTTATCTTCTCTT
TTTCTCTTTATCTTCCTACAATAAAGCTCTAAATTCATAGACTGTCTCTGTTCATCATAT
AAGCCTAGAGAAAAATGAAGTTAGGTAAACAATGAATAACTTTTTCTGAGACATGTATTA
CTGGTGGGTCTACATATACTTATACCATGGGTCTATGATTCATTTCTCAGTCTGAGTTTT
ATGCTTAAAATCGGAGTATGAATGCCTGGCCCGCTGAGATGTTTAATTCAAACTAACCCA
AACCACTCAAAGGTCATAAACCAAGCTTCTTCAAAGATTTTTGGCTTTTTGGCACCAGTG
GCCTGCAGAGTGGCGAGCTCTGCCAGTTTGAAGTGACCAAGTTAAGTGGCCTGGGAAAGG
CCACTTGGTGCGCGGTCCAGCAGTTTTGGGCGCTCTCGGCTTCCGCCCTC
1 EXON 1 5,083,080 5,083,278 - - 199
AGCTGCGGTCACGTGCCGCTGCTCACGTGCCAGACGCTGCTGTCACTTCGTAGCTGTTCC
GGCTTCCTCTGAGTGAGGCTCGCAACGTCTTCCACGGAGTCGCCTTCGTTCTGCTCTGGG
TCTCCCGTGGTCACTGAGACCTCGGAGCTCGACCGGCGCCTGCCCGCCCGTGCGGCCCTC
ACTCCCCGAGGCTATCCAG
INTRON 1 - 2 5,083,279 5,084,416 1,138
GTGAGGCCGCCTGGGGTCCCTCCCC..........CTGCTATCCTGTTTTTATCTTGAAG
2 EXON 2 5,084,417 5,084,563 - 2 147
GTCTGTGGGAAACATTCAAAGACATAAAGTTTAGATGACCAAGATGGACATTCGAGGTGC
TGTGGATGCTGCTGTCCCAACTAACATCATTGCGGCCAAGGCTGCTGAAGTTCGTGCCAA
CAAAGTGAACTGGCAGTCTTATCTTCA
INTRON 2 - 3 5,084,564 5,089,008 4,445
GTGCGTACTGGTTTGTTGTGAGTCA..........AGAATAATTCATTCTTACTTTCTAG
3 EXON 3 5,089,009 5,089,111 2 0 103
GGGGCAGATGATTTCTGCTGAAGATTGTGAATTTATTCAAAGGTTTGAAATGAAAAGAAG
TTCCGAGGACAAGCAAGAGATGCTTCAAACTGAAGGCAGCCAG
INTRON 3 - 4 5,089,112 5,093,362 4,251
GTAATCCTTACTTTTATTTTATAAT..........ATAACATTAATTTGATGTTTTGCAG
4 EXON 4 5,093,363 5,093,452 0 0 90
TGTGCTAAAACATTTATAAATCTGATGACGCACATCTCCAAAGAACAGACAGTGCAGTAC
ATACTAACCATGGTTGACGATATGCTGCAG
INTRON 4 - 5 5,093,453 5,095,614 2,162
GTGAGTGTGATATACTAACCATGGT..........CATTATGTGCTTGGTTTTCTTTTAG
5 EXON 5 5,095,615 5,095,728 0 0 114
GAAAATCACCAGCGTGTCAGCATTTTCTTTGACTATGCGAAACGAAGCAAGAGCACTGCC
TGGCCATACTTCCTGCCAATGTTGAATCGCCAGGATCCCTTTACTGTTCATATG
INTRON 5 - 6 5,095,729 5,098,028 2,300
GTAAATTTTGAATTGATCACATTCT..........AGATGTATTTCTTATTCATTTTCAG
6 EXON 6 5,098,029 5,098,133 0 0 105
GCAGCAAGAATTATCGCCAAGTTAGCTGCTTGGGGGAAAGAACTGATGGAAGGCAGTGAC
TTAAATTACTATTTCAATTGGATAAAAACTCAGCTGAGTTCACAG
INTRON 6 - 7 5,098,134 5,101,069 2,936
GTAACAGAAATTTCCTTTATTATCC..........TACTAAGTCATTTATTTTGTAATAG
7 EXON 7 5,101,070 5,101,123 0 0 54
AAACTTCGTGGCAGCGGTGTTGCTGTTGAAACAGGAACAATCTCTTCAAGTGAT
INTRON 7 - 8 5,101,124 5,117,389 16,266
GTAAGTATGTCCCTTCCAATTGACT..........AACACAGCACACTTTTCCTGTGTAG
8 EXON 8 5,117,390 5,117,487 0 2 98
AGTTCTCAGTATGTGCAGTGTGTTGCTGGCTGTCTGCAGCTGATGCTCCGGGTCAATGAG
TACCGGTTTGCCTGGGTAGAAGCAGATGGAGTGAACTG
INTRON 8 - 9 5,117,488 5,124,276 6,789
GTGAGTGAGTGCCCTTTACTTTTAT..........AAATGTTTTCTCTGTTCTTTTTCAG
9 EXON 9 5,124,277 5,124,469 2 0 193
TATAATGGGCGTTTTGAGTAACAAGTGTGGTTTTCAGCTTCAATACCAAATGATTTTTTC
AATATGGCTCCTGGCATTCAGTCCTCAAATGTGTGAGCACCTTCGTCGCTATAATATCAT
TCCTGTTCTATCAGACATCCTTCAAGAATCTGTCAAAGAGAAAGTAACAAGAATCATTCT
CGCAGCATTCCGG
INTRON 9 - 10 5,124,470 5,133,083 8,614
GTAAGTGCTCAGTGAAGGAGATTGT..........CTTCATGTCTCTTTGTCTAACTCAG
10 EXON 10 5,133,084 5,133,262 0 2 179
AATTTCTTAGAAAAATCAACGGAAAGAGAAACTCGCCAAGAGTATGCTCTGGCTATGATT
CAATGCAAAGTACTGAAACAGTTGGAGAATTTGGAGCAGCAGAAGTATGATGATGAAGAT
ATCAGTGAAGACATCAAATTTCTTTTGGAAAAACTTGGTGAGAGTGTCCAGGACCTTAG
INTRON 10 - 11 5,133,263 5,135,811 2,549
GTGTGTTATCATCTTCATCATTGTC..........CTGGAATTTTAAAATAATTTTATAG
11 EXON 11 5,135,812 5,135,937 2 2 126
CTCATTTGATGAATACAGTTCAGAACTTAAATCTGGAAGATTGGAATGGAGCCCTGTACA
CAAGTCTGAGAAATTTTGGAGAGAAAATGCCGTGAGGTTGAATGAGAAGAACTATGAACT
CTTGAA
INTRON 11 - 12 5,135,938 5,143,749 7,812
GTAAGTTAGGATCCCATGTTCTGCT..........TATGTTGGAATTAAATTTATTTCAG
12 EXON 12 5,143,750 5,143,851 2 2 102
AATCTTGACAAAACTTCTGGAGGTATCAGATGATCCACAAGTCTTAGCTGTTGCTGCTCA
CGATGTTGGAGAATATGTCCGGCATTATCCCCGGGGAAAACG
INTRON 12 - 13 5,143,852 5,149,947 6,096
GTAAAAGACAAGGACAAACCTATGT..........TCACCAAGTCTTTTCTGTTCTGTAG
13 EXON 13 5,149,948 5,150,061 2 2 114
GGTTATTGAGCAGCTTGGTGGAAAGCAGTTGGTGATGAACCACATGCACCATGAAGACCA
GCAGGTTCGCTACAATGCTCTTCTGGCCGTGCAGAAGCTCATGGTGCACAACTG
INTRON 13 - 14 5,150,062 5,162,104 12,043
GTATGTCTTGGTGTCTATCTCACCT..........ATGTTACCATGTTCTTGTTTTCTAG
14 EXON 14 5,162,105 5,162,529 2 - 425
GGAATATCTTGGTAAACAACTACAGTCAGAGCAGCCTCAGACTGCTGCTGCTCGGAGCTG
AGCTGACCTGTTCAGCCTTTCTGCACTTCCCATGGACCAGTGGAGTGAGAACCTCAGTCT
TTAGGGTTAAAAGCAAATAGTTTTTAATTTAATGATTACTTCTTTTCTGTTGTATAGCTT
TTCCCTATGGTAATTCCTGGGAGAATAAAAGTGTTTGCTTGTTAAATTGTATAAAAGTAG
ATACTGCCTGTATTAGAGAAATATTACTGTTACTTATATTCTTTATGATTTTTGTATTTA
TTGTCCTCTGAAAATGAATATAATTAAAGGATTCTCACTCCAAACATGTTCTTAAATTTT
GCTTATTCCTATTGTGGACTTTGAATAAACATCATTTATTTCAAATAAAAATTGGGAGAA
GTGTT
3' upstream sequence
CCCAGGTGATGATGAGAAGTAAATGTTTTGAAATGATCATCTCCATCCCCCTCCCCCTCC
CCCTCTCTCTGGCTTTTGCTCTCACTCTCTCTTACTCTTTCACTCATACGGACACACACA
TATGCACACATACATTCTACACCTTCAAGACATTACATAATAACAGGTATGTCCTGAGAA
ATACATTTTTTGGGCAATTTAGTCACTTTGCAAACATTACAGAATATAGGTACATAAGCC
TGCTCTTGATTTGCCCTCTTGATGTAGTGAAGACAGTAAAAGGTGGATGAGGCTGTTGCT
GTCAAAATATGGGAGATTATTTCACAGTAAACTTTAGGAGTACACTTTAATATAGTAACA
ATAAGTAAATAGACACATGGTTATTACCACTACCCACTGTAGTGTACTATACATTGTTCT
GTATTCTTTTTTTCTTTTTTTTTTTTTTCTTTTTTTGTATTCTTATACCACTGCGAGTCA
GCACTTAACTCTCATTATCAGCAGCATCACACAGGTGAGCAAGACCAAGTGCTCCAGTAC
CAGTATCTACAACATTGCTGTGTTTAGAACATTTTGCACCGTTGTGATTTTTATGGCATT
ATCATGGTATATGCAGTGTGTTATTCATGAATGACTGTGAAGTTAAAAAATTTAAACCTT
GAATAAATTTTGTTAGACTTTGTATATTTTATTTCTTTTAGACTTTAAAAAGATCTATTT
TTTATGAAACTAAAATTTAATAATATAAACATCACACTAAAGTTGGACAAGGCAAACTAA
AAGAAGGAAAAGAGCCCCAAAGAAAGCACAAAACTCAGAGACCCATTTTTTCATGTACTT
GGAACTCCCATAAAAACACTAAACTGAAAGCTATAATATATACGTGAAGGACCTGGTGCA
GACATGTGCAGGCCTTGTGCTGCTTTGGTCTCTATGAATTTATATGATCTGTACTCAAGT
TGGTTAGAAACCCTTGTTCTCCTGGTGTCATCCATCTCCT..........

Sequence Detail Report

Gene Symbol (Gene ID) Atp6v1h (ENSMUSG00000033793)
Transcript ID ENSMUST00000044369
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 484 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information