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Target CDS Information

Gene Symbol (Gene ID) Mrpl15 (ENSMUSG00000033845)
Cross Reference
EMBL AC102311, AC117576
GO GO:0000002, GO:0003735, GO:0005739, ...show all
goslim_goa GO:0003674, GO:0003723, GO:0003735, ...show all
MGI_trans_name Mrpl15-003
OTTP OTTMUSP00000037455
OTTT OTTMUST00000072661
UCSC uc007afd.3
UniParc UPI0001611446
Uniprot/SPTREMBL F8WHN1
Vega_transcript Mrpl15-003, OTTMUST00000072661
Vega_translation 178607, OTTMUSP00000037455
Definition protein_id:ENSMUSP00000048472
translation:
MAGTARGCGTSLDLLRSLPRVSLANLKPSPNSRKRFQAPVSAFESQETTVSH

Chromosome 1
Length
Position(start - end)
2,996
4,782,680 - 4,785,677
Orient to Chromosome minus
Link Location : (1:4782680-4785677)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Mrpl15 (ENSMUSG00000033845)
Transcript ID ENSMUST00000045689
Reports
substitution
cSNPs0
Insertion18
Deletion20
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num0
synonymous substitutions
non-synonymous substitutions
B6 transcript
(ENSMUST00000045689)
MAGTARGCGTSLDLLRSLPRVSLANLKPSPNSRKRFQAPVSAFESQETTVSH*
MSMv4 transcript
MAGTARGCGTSLDLLRSLPRVSLANLKPSPNSRKRFQAPVSAFESQETTVSH*
homology100.00 (53 / 53)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Mrpl15 (ENSMUSG00000033845)
Transcript ID ENSMUST00000045689
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........CATTTGCAAGTAAGAATGTATGGACAAAAGGGTATACTGTAGGACACACT
GTGACACACGACAGCTTCACGATGAGGTTTCCTAAACTTTATTTTTATTTTTTGGGGCGG
GGGGTTTGCAAGGGCAAAAAGGACGGAGGGATTGTGGATCTGGAGTGTATGATGTGGAAT
TCACAACGAATCAATAAAATAAAAATAAAGGTTTATTTGAGTTAGAAAAAGCTGCTTATT
AAATTGTCTCACCTTCACTATATAACTGATAGAGCTTGGTAGGAGCAATTCTCCAGCAAG
ACAGTGGAGCAGAAAAAGAATATAAAAATGAACACATTGTTTTCTATATTGCTTGTATTA
AGACAAGTTTTAAAAATCATTTAATTTGGAGAGTTAAATATATGTTTGGCAGTTTAAGTT
CATTAGCTTTGAATCCTATCTATACCATCTGCTGTGACAGCTGGGTCGATCTGATAGGCA
TAAAACCACACCTCGCTTCTAGCATGGTTGTTTATATGAATCTAGTAAGGCTAACTTTAA
CTCAGTGTCTGGCATACCCCAGGAGCTAAGTATGCCCCACCCCCCATCGTTAACTGCAAG
GCACGCTATTAGGTTGAACCTAATTAGACAATTAATTCTAGAGCCAGGCACTGTAACAGT
TGAATTATCAGAGTCTCAAAGCTTGAACCTGTTCACATCATTTTGGATTACTCTTCGCTT
CATGAGGCCCCACTTTTACCGCACAACGTGTTCAGTCATTACAGGGCAGAAGAGAACAGT
TTTCGTTCACAAGATGGTACCCAAGCCAGAGGATAAAGCATGATCTCACAAAAGTTGATG
CAGTTCCCCGAAGTAAAAAGCCATCAAGCCTGGAAGCTGGAAGACACAGCCTACCGACCC
TGATGCGGTCGCTCTGCAGCACGACAGGGGCGGGGCAGTACGGCCGCTGCAGCGCGACAG
GGGCCGGGCGGAGCCGTAAAGCAACGCGGAGTCTACGCCGCTTCCAGGGC
1 EXON 1 4,785,573 4,785,698 - 0 126
GCCCTTGAAGCACCGCGGGTCATGGCTGGCACGGCGCGCGGCTGCGGGACCAGCCTGGAC
CTGCTGCGGTCCTTGCCGAGAGTGAGCCTGGCCAACCTGAAGCCCAGTCCTAACTCCAGA
AAACGG
INTRON 1 - 2 4,782,734 4,785,572 2,839
GTAAACGCTTGGCGGCGGTGCGGGG..........TAATTATTACATTCCTGCTTTGCAG
2 EXON 2 4,782,568 4,782,733 0 - 166
TTTCAGGCACCAGTATCAGCCTTTGAGTCTCAGGAGACTACAGTATCTCATTGATTTAGG
TCGAGTTGATCCAACTCAACCTATTGACCTAACCCAGCTTGTGAATGGGAGAGGTGTGAC
CATCCAGCCGCTTAAGAGGGATTATGGAGTCCAGCTGGTTGAAGAG
INTRON 2 - 3 4,777,649 4,782,567 4,919
GTAACTCTAGATTGGATTTTGTATG..........TTTTTTTTTTTTTTTTTTTTTACAG
3 EXON 3 4,777,525 4,777,648 - - 124
GGTGCTGATACTTTTCAAGCAAAAATTAATATTGAAGTGCAGCTGGCTTCAGAATTAGCC
ATTGCTGCCATTGAAAAAAATGGCGGTGTTGTTACTACAGCCTTCTATGACCCAAGAAGT
CTAG
INTRON 3 - 4 4,774,517 4,777,524 3,008
GTAAGTGTTCTCTGGTCGGTTTAAG..........CAACCATCTGTTTTCCCAATTCCAG
4 EXON 4 4,774,436 4,774,516 - - 81
GGCACTTGATGCACTCTTCTGACTTCCATGGATTTTCGGCAAGACACTCAATACACATAA
AATAATAAAAAAGCCATTGAG
3' upstream sequence
AAAAGACATCTGACCAGCATCTGGCCTCCATGTGTGCCTGCATCTGGTCTCCATGTGTGC
CTGCATCTGGCCTCCATGTGTGCCTGCATCTGCCCCCACATCCCATTTCTAAAGTAAGAG
GGAAACTTTTGTTATGATCTGAGTCCATGGTCTTTTTTTTTAATTGTAAGTCTTTACAAT
TTTCTTTGGGAAGTAGAAGGTCCTTCTTAGGGTGGGGAGTGTCAGACGGGACCAGTACTC
GTTTCACCTAGGGTGGAGGAGAGAGCTCTGATGTTAGTGTGAGTCCCATGACGGTTGTCT
TTCGTGATAACTTGCTGTAGGCAGACCACTACACTCTAGCTTGCTCGTTACATGCTTGGA
GCTGCACAGCCATCTGGGTGAAACACTTGAGTAGGACTTTAAGCAAGACTAGATTTGGGA
CTTTGGCATGCAATTTATTCTCTGCCTCTGTTTCACCATCTGCTAAATGGAGGGTAAAAT
AAAAATTTGGTAATTATAAAATACAAATTCTCTTAGGGATTTTACTGCTATAACCAGCAC
CATGACCAAAAGCCAGTTGGGAAGGAAGATTATTTGGCTCACACTTCCGTAACACTGTTC
ATCAAGGAAGGAAGCCAGGATAAGAAATCAAACAGGGCAGCAGCTCATGTAGAGACCATG
GAGGGTGCTGCTTACTGACTTGCTCCTCATGGCTTGCTCAGCCTGCTTCCTTATAAAACC
CAAGATCACCAGCCCACAGATGGCACCACCCACAATGGGCTGGGTCCTTCCCCATTAATC
ATTAAGAAAATGCCCTACAGGTTTGCCTACAGCTGGATTGTACGGAGGCATTTTCTTAAT
TGAGATTCCTTCATTTCAGATGACTGTCGAGTTGACATAAAATTAGAACAGTTATTATGC
AAGTCGCTAGTGTTTGTAAAGCATGTAGCACACGCCTGTTTCGTAGGCCTCTAGAGTTAG
TGTCTCTTCTGATCTTTAGGTAACTGCCATCCTGTGGATT..........

Sequence Detail Report

Gene Symbol (Gene ID) Mrpl15 (ENSMUSG00000033845)
Transcript ID ENSMUST00000045689
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 53 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information