top page

Tutorials are available here.

Target CDS Information

Gene Symbol (Gene ID) Prr7 (ENSMUSG00000034686)
Cross Reference
CCDS CCDS26546.1
EMBL AK133129, BC138854, BC138856, ...show all
Fantom 4930589C02
GO GO:0003674, GO:0005575, GO:0008150, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005623, ...show all
MGI_trans_name Prr7-201
protein_id AAI38855.1, AAI38857.1, BAE21522.1, ...show all
RefSeq_mRNA NM_001030296.4
RefSeq_mRNA_predicted XM_006517289
RefSeq_peptide NP_001025467
UCSC uc007qrb.2
UniParc UPI0000026480
Uniprot/SPTREMBL B2RSG4
Uniprot/SWISSPROT Q3V0I2
Definition protein_id:ENSMUSP00000046776
translation:
MVMSQGTYTFLTCFAGFWLIWGLIVLLCCFCSFLRRRLKRRQEERLREQNLRALELEPLE
LEGSLAGSPPGLAPPPPPHRSRLEAPVHAHSHVHVHPLLHHGPAPPHAHPHPHHHALPHP
PPPHLAVPPRPWSYPRQAESDMSKPPCYEEAVLMAEPPPPYSEVLTDTRGLYRKIVTPFL
SRRDSAEKQEQPPPSYKPLFLDRGYTSALHLPSAPRPAAPCPALCLQAERSRRVFPSWTD
SELSSREPLEHGAWRLPVSIPLFGRTTAV

Chromosome 13
Length
Position(start - end)
964
55,472,025 - 55,472,990
Orient to Chromosome plus
Link Location : (13:55472025-55472990)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Prr7 (ENSMUSG00000034686)
Transcript ID ENSMUST00000046533
Reports
substitution
cSNPs3
Insertion5
Deletion4
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num1
non-synonymous num2
synonymous substitutions 55472219 (p.Leu65Leu),
non-synonymous substitutions 55472319 (p.Leu99Met), 55472347 (p.Ala108Val),
B6 transcript
(ENSMUST00000046533)
MVMSQGTYTFLTCFAGFWLIWGLIVLLCCFCSFLRRRLKRRQEERLREQNLRALELEPLE
LEGSLAGSPPGLAPPPPPHRSRLEAPVHAHSHVHVHPLLHHGPAPPHAHPHPHHHALPHP
PPPHLAVPPRPWSYPRQAESDMSKPPCYEEAVLMAEPPPPYSEVLTDTRGLYRKIVTPFL
SRRDSAEKQEQPPPSYKPLFLDRGYTSALHLPSAPRPAAPCPALCLQAERSRRVFPSWTD
SELSSREPLEHGAWRLPVSIPLFGRTTAV*
MSMv4 transcript
MVMSQGTYTFLTCFAGFWLIWGLIVLLCCFCSFLRRRLKRRQEERLREQNLRALELEPLE
LEGSLAGSPPGLAPPPPPHRSRLEAPVHAHSHVHVHPLMHHGPAPPHVHPHPHHHALPHP
PPPHLAVPPRPWSYPRQAESDMSKPPCYEEAVLMAEPPPPYSEVLTDTRGLYRKIVTPFL
SRRDSAEKQEQPPPSYKPLFLDRGYTSALHLPSAPRPAAPCPALCLQAERSRRVFPSWTD
SELSSREPLEHGAWRLPVSIPLFGRTTAV*
homology99.26 (270 / 270)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Prr7 (ENSMUSG00000034686)
Transcript ID ENSMUST00000046533
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TGTTATCTCCCTGAGAACCGGTTGTTCACACTCAAGGAAGGCACTAACCC
CTAGGCGGTTGTGTGGAGTATGTATCCTTCTCTACCCCCAAGGCATGAGTTAGTTCATTG
GACAGGCGTCCTAGATGTCACCTGTGCATTTGTCTTTACTAGAGCTACTGGGAAAGACAG
TTTTCTCACTGGGAATGGCTGGCAGAGCTTAAATCCAGCTGTTGGAGACCACCCATACCT
CCATTTGGGGGCAGCGTGCCTAATGCCAACGTTTGAAACGCCTGGAACCAACTGTGACAT
GAGTTCTGGGTTCACTGGCTTTATGTGCCCTTTCCCCTTGGCCTCCAGTTTAAGATCCTG
GCTCTCAGAGCCATTACTGTTCCAGTTGACATGGTGGGAGGTGCTTCGGGGAGTTCACCC
TTAATGCCACAGAGAAGTTGAAATAGAAACGGTAGAAAGGCAAGCACAACCAGTGTCAAA
TGAAGATGGAGCCAGCTATGAGCATGCCCGTGGAACCATAGCAGTTTAGTGCTCAGGTGG
GTCTGTGATGCTTCTCAGTTGCAATGTTGGAATGCATACCTTCTGGAACAGTGGTTGGGG
TCGTGAGTTGGGAGGAAGCCACACCGGGGTGCTGATTCCATCGAGTCCCTGCCCCCATTA
CCTGTGTTTGAATATGCCCAGGTTGAGTTGTGTGAGTCTCCGGGTTTGTTACCTCAGCTG
CTCCGCTAAGCATCCGGCGTCTATGGCCGCAAAGCTGCCAGTGTGGCCTTCACCTCCAGC
CCCTTTAGATAGCCTGTTGCCTGGGAGCTGTACGGAGTGTACTTTTTATTTTTTTGCGCT
GGGATGCCCTTGGTATTGCGAGCCCACATCCTCTGCCGCGTCTGGGTGCGGCAGGTGGGT
CCGGAGTCCCACCCACCCCTTCCCTCGCAGCAGCCTTGGCGGCGTGAGGGGGGGGGGGCT
CTGTTGGCTGCGCGCGCGCGCACGCCAGGCTCAGCACGCGCCCGTGCGCG
1 EXON 1 55,464,267 55,464,414 - - 148
CGCCCCGCGCCTCCAGCCCAACGCTCCGAGCGGCTTTCGTTGCCACTGTCTGCTCCCCGG
AGCCGCTGCCGGCTCTAAGCTTGGGTTCTGTCCGTTGGGCCGCTTGCCCCGAGGCAGGAA
GACGAGTTCGAAGAGGATGCCTGGGCCC
INTRON 1 - 2 55,464,415 55,471,787 7,373
GTGAGTACCGCGACGGCTGCGGGCC..........GCTGAGCCCTGTGTCTGCCCCGCAG
2 EXON 2 55,471,788 55,472,436 - 1 649
GTTGCTCGCGGCCCCGGGTGAAGCAGGCCCGCGCCGGCCGGCGCCATGGGAAGGAGCGGG
AACCACAGTTGCCCCTCGCCGGCATGTGCGCCTATTGAGCCCCGCCGCAGGCAGCCCCCG
GCCGCAGGTCCCCGAGTGACACTGGCGGCACCTGGGAGCGTGGCGCGGCCCCGGGGCCAC
GCCGAGGAGCCCAGCGTCCAGTAGAGCTGCCGAGGACCTGCCGCTTGTGCCGCAGCCATG
GTGATGTCCCAGGGCACCTACACGTTCCTCACTTGCTTCGCCGGCTTCTGGCTCATCTGG
GGTCTCATCGTCCTGCTCTGCTGCTTCTGCAGCTTCCTGCGCCGCCGCCTCAAACGGCGC
CAGGAGGAGCGACTAAGGGAGCAGAACTTGCGTGCCCTGGAGCTGGAGCCCCTCGAGCTT
GAGGGCAGCCTAGCTGGAAGTCCTCCCGGCCTGGCGCCGCCGCCGCCACCGCACCGCAGC
CGTCTGGAGGCGCCTGTGCACGCGCACTCGCACGTGCACGTGCACCCGCTGATGCACCAC
GGGCCGGCGCCGCCGCACGTGCACCCGCACCCACACCATCACGCACTGCCGCACCCACCG
CCGCCGCACCTCGCCGTGCCGCCCCGGCCCTGGAGCTATCCGCGCCAAG
INTRON 2 - 3 55,472,437 55,472,592 156
GTAAGGCTGCGTTTCGGCAGGCGAG..........CACCAGCCCGCTTCCCGTTCCGCAG
3 EXON 3 55,472,593 55,473,155 1 - 563
CGGAATCGGACATGTCTAAGCCGCCGTGCTACGAGGAGGCGGTGCTGATGGCCGAGCCGC
CGCCTCCCTACAGCGAGGTGCTCACGGACACTCGCGGCCTCTACCGCAAGATCGTCACGC
CCTTTCTGAGCCGCCGCGACAGCGCGGAGAAGCAGGAGCAGCCGCCTCCGAGTTACAAGC
CTCTCTTCCTGGACCGGGGCTATACTTCGGCGCTGCATCTTCCCAGCGCCCCGCGGCCCG
CCGCACCCTGCCCTGCCCTCTGTCTGCAGGCGGAACGCAGCCGCCGGGTTTTCCCCAGCT
GGACCGACTCAGAGCTCAGCAGCCGAGAGCCCCTGGAGCACGGAGCTTGGCGTCTGCCGG
TCTCCATCCCCTTGTTCGGGAGGACTACAGCCGTATAGAGGGGCGCCCGGCGTCCCGAGC
CCCACGGGCGAACTCCTAGCCTGACTGCGAGGCTTTTTAAATGCTTCCCTTGGACTGCAG
GGAGGGGTGGGGGGGAGGGAGGGATTTCTTACCCTGTTTGTTACATTTTGAGGATAATAA
AGGTGTGTGATCTGCTTTGGTAC
3' upstream sequence
AAGCGGAGGGGGATACCAGCTGCTTTAAGCACAAGGTGCTAGTGACCGGGCATGTGGACT
TTAGGGAAAGTGCCCGAGTCCTGGCCTTGAGAGCAGAGGGCTGGTGTTCGGAAACCAAAG
GTTGTTTCTCAAGGGCTTAATGTTCCGTCTCCTCCTAACCTGTTTTTGTGCGCCCCCTGT
AGCCTCGGAGGTGACAGGAGTTGGGAAGCTGGTCGTGAGGGCCGGCGCCCACGCCAGATC
AACCCCTGGAGGCCCAGAGCAGCAGGCCCGAAGGGATCTGGATTTCTTTATTAACAGACA
TGAGCACGACCCATTACATAAGTTTGTGCTTAGAAAAAAAAAAAAAGTTAATGTGAAAAA
GAACCCAAGCAGAGAGGAAGGAATTGGGGAGGGGCCACCCAAACCACTGGGTCCCATCAA
TAAGCCCTGACTTGAGTCATGCCTAGGACCTCCAGCCTGGGACCTGCCCGGCAGGAGAGG
GCGGGAAGCCAAGGGGCCCCAGGTGGGTCTGATAATTCCTTCTGACCAAGCAGCGAGGGT
AAAGAGAAGGGGAAGGGTCCCAGGGAGCCAGAGCCCACGAGCCATTTATTGCCATGTTTT
AAATTTCGTGCAAAATATCTGAAGCCCTGGATAGAGAATACAAAGTGATTTTTTTTCCAA
GAAACATAAAACTAGGAAAAGTGATGGGGGGAACATTTTCCCACCAGAACCCCCGACCCC
CACCAGGTCCCAAACAAGGTGAGGCCTCCACCCTGGTCAGCTGAGCAGAAAGAACTAAGC
TACAATCTGGTCTGGGCAGGAAGGGGGTGGAATCTGCAACATTGTTTCAACTACCAACGG
GAGGAAAACCAGTCAATTGTACAAGTCTATCAACTTTTAAAAAAAAGAGAAAAGCTGTAA
AAGTCAGGCCCTGTGGGTAAGGAAGCAGACAGGTCCCCGGCCAGTGCCGGAATCCAGAGT
GGGAGCCAGGCGGGGCTGCTGCTAATGCTGGCACTGCAAG..........

Sequence Detail Report

Gene Symbol (Gene ID) Prr7 (ENSMUSG00000034686)
Transcript ID ENSMUST00000046533
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 270 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information