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Target CDS Information

Gene Symbol (Gene ID) Pklr (ENSMUSG00000041237)
Cross Reference
CCDS CCDS17489.1
EMBL AC161600, CH466547
GO GO:0000287, GO:0001666, GO:0004743, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005576, ...show all
MGI_trans_name Pklr-001
OTTP OTTMUSP00000019089
OTTT OTTMUST00000042489
protein_id EDL15236.1
Reactome R-MMU-1430728, R-MMU-70171, R-MMU-70326, ...show all
RefSeq_mRNA NM_013631.2
RefSeq_peptide NP_038659
UCSC uc008pxp.1
UniParc UPI00000266A1
Uniprot/SPTREMBL G3X925
Vega_transcript OTTMUST00000042489, Pklr-001
Vega_translation 187641, OTTMUSP00000019089
Definition protein_id:ENSMUSP00000035417
translation:
MSVQENELPQQLWPWIFKSQKDLAKSALSGAPGGPAGYLRRASVAQLTQELGTAFFQQQQ
LPAAMADTFLEHLCLLDIDSEPVAARSTSIIATIGPASRSVDRLKEMIKAGMNIARLNFS
HGSHEYHAESIANIREAAESFATSPLSYRPVAIALDTKGPEIRTGVLQGGPESEVEIVKG
SQVLVTVDPKFRTRGDAKTVWVDYHNITQVVAVGGRIYIDDGLISLVVRKIGPEGLVTEV
EHGGFLGNRKGVNLPNAEVDLPGLSEQDLLDLRFGVEHNVDIIFASFVRKASDVVAVRDA
LGPEGRGIKIISKIENHEGVKKFDEILEVSDGIMVARGDLGIEIPAEKVFLAQKMMIGRC
NLAGKPVVCATQMLESMITKARPTRAETSDVANAVLDGADCIMLSGETAKGSFPVEAVKM
QHAIAREAEAAVYHRQLFEELRRAAPLSRDPTEVTAIGAVEASFKCCAAAIIVLTKTGRS
AQLLSRYRPRAAVIAVTRSAQAARQVHLSRGVFPLLYREPPEAVWADDVDRRVQFGIESG
KLRGFLRVGDLVIVVTGWRPGSGYTNIMRVLTIS

Chromosome 3
Length
Position(start - end)
9,389
89,136,183 - 89,145,573
Orient to Chromosome plus
Link Location : (3:89136183-89145573)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Pklr (ENSMUSG00000041237)
Transcript ID ENSMUST00000047111
Reports
substitution
cSNPs7
Insertion9
Deletion14
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num7
non-synonymous num0
synonymous substitutions 89141541 (p.Ala137Ala), 89141547 (p.Glu139Glu), 89141610 (p.Pro160Pro), 89141813 (p.Thr186Thr), 89141822 (p.Pro189Pro), 89142273 (p.Leu254Leu), 89144991 (p.Gln534Gln),
non-synonymous substitutions
B6 transcript
(ENSMUST00000047111)
MSVQENELPQQLWPWIFKSQKDLAKSALSGAPGGPAGYLRRASVAQLTQELGTAFFQQQQ
LPAAMADTFLEHLCLLDIDSEPVAARSTSIIATIGPASRSVDRLKEMIKAGMNIARLNFS
HGSHEYHAESIANIREAAESFATSPLSYRPVAIALDTKGPEIRTGVLQGGPESEVEIVKG
SQVLVTVDPKFRTRGDAKTVWVDYHNITQVVAVGGRIYIDDGLISLVVRKIGPEGLVTEV
EHGGFLGNRKGVNLPNAEVDLPGLSEQDLLDLRFGVEHNVDIIFASFVRKASDVVAVRDA
LGPEGRGIKIISKIENHEGVKKFDEILEVSDGIMVARGDLGIEIPAEKVFLAQKMMIGRC
NLAGKPVVCATQMLESMITKARPTRAETSDVANAVLDGADCIMLSGETAKGSFPVEAVKM
QHAIAREAEAAVYHRQLFEELRRAAPLSRDPTEVTAIGAVEASFKCCAAAIIVLTKTGRS
AQLLSRYRPRAAVIAVTRSAQAARQVHLSRGVFPLLYREPPEAVWADDVDRRVQFGIESG
KLRGFLRVGDLVIVVTGWRPGSGYTNIMRVLTIS*
MSMv4 transcript
MSVQENELPQQLWPWIFKSQKDLAKSALSGAPGGPAGYLRRASVAQLTQELGTAFFQQQQ
LPAAMADTFLEHLCLLDIDSEPVAARSTSIIATIGPASRSVDRLKEMIKAGMNIARLNFS
HGSHEYHAESIANIREAAESFATSPLSYRPVAIALDTKGPEIRTGVLQGGPESEVEIVKG
SQVLVTVDPKFRTRGDAKTVWVDYHNITQVVAVGGRIYIDDGLISLVVRKIGPEGLVTEV
EHGGFLGNRKGVNLPNAEVDLPGLSEQDLLDLRFGVEHNVDIIFASFVRKASDVVAVRDA
LGPEGRGIKIISKIENHEGVKKFDEILEVSDGIMVARGDLGIEIPAEKVFLAQKMMIGRC
NLAGKPVVCATQMLESMITKARPTRAETSDVANAVLDGADCIMLSGETAKGSFPVEAVKM
QHAIAREAEAAVYHRQLFEELRRAAPLSRDPTEVTAIGAVEASFKCCAAAIIVLTKTGRS
AQLLSRYRPRAAVIAVTRSAQAARQVHLSRGVFPLLYREPPEAVWADDVDRRVQFGIESG
KLRGFLRVGDLVIVVTGWRPGSGYTNIMRVLTIS*
homology100.00 (575 / 575)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Pklr (ENSMUSG00000041237)
Transcript ID ENSMUST00000047111
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TGGGGTCAGGAGAATCCCCAGTCTAGGGTCATCTGGGATATGGAAAAAAA
GTAAGTGCCAGGTGGTCCGTCTGTTGGTCGGGGTAGTTATAGGGAATTTTGACAGCAGGA
CTGCAGCTTATGCTCATGGTGGTCAGCAAGGCAAGGTCACTCTCCCTGGTGCCTTGGTAA
AAAGTGAGTTGGGTGCGATGTCCCCACGATGGCTGAAGAACTCCCCTGTGCTCAGGCTTC
CTGTGTTTACTAATATGGTTCGTCAACATCAATCTAAACAAGTTTATCAATTAGTGCCTA
GAACTGTTTATAGTTTCATCTTTGGATTCACAGAGGAACAGATGCGAGAAACTGAGATAC
CCTCTAACGTCTATCAAAGGGTTCCCCTCTGCCAGGTGGTGGTGGCGCACGCCTTTAATC
CCAGCACTTGGGAGGCAGAGGCAAGCAGATTTCTGCGTTCGAGGCCAGCCTGGTCTACAC
AGAGAAACCCTGTCTAGAAGAGAAAAGGAAAGGAAAGGAAAGGGAAGGGAAGGGAAGGGA
AGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGAGAAGAGA
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA
AGAGAAGAGAAAAAAAAGTTCCTCCCTCTTTTCCACAATCTAGTCCCCACATTCAAGCTC
TTGCTCTGAGAATATACCTAAGATTCTTGTCAATAAAATACAAAGAGAAAAGGATTGTAT
CACTGGCGATGAACTAGTCTCTATTGAAGCTGATGAACTGACAGTATGAATGGACTAAAA
ATTGACCAGGAAAAACGGATGACCTAGGGGAAGGAAAGATGTGGGGACTGACAACCGACA
GCCCTCCAGAAGGGACTCTGTGTGGGGATGGGGCTGCCTACTGGGTGTGCCTCTTTTCTA
TTCTCTGGCTCCTGCAGATAAGACCAGCAGTTAGGGTACACTCTCCTCCC
1 EXON 1 89,136,142 89,136,282 - 1 141
AGTCTGTGGTTCTTGCAGCCCCAGTCCCACACTTTGGAAGCATGTCTGTCCAAGAGAACG
AGCTACCCCAGCAGCTCTGGCCCTGGATCTTTAAGTCCCAAAAAGACTTAGCAAAGTCTG
CTTTAAGTGGGGCTCCAGGAG
INTRON 1 - 2 89,136,283 89,137,223 941
GTAAGAAGAGGAAGGGAAGCCACTG..........GATCCTGAGTCTCCATCTACCGCAG
2 EXON 2 89,137,224 89,137,406 1 1 183
GGCCAGCAGGATACCTGAGACGTGCCAGTGTGGCCCAGCTGACCCAGGAGCTGGGCACTG
CCTTCTTCCAGCAGCAGCAACTGCCCGCAGCTATGGCGGACACCTTCCTGGAACACCTCT
GCCTTCTGGATATCGACTCAGAGCCTGTGGCCGCTAGGAGCACCAGCATCATTGCCACCA
TCG
INTRON 2 - 3 89,137,407 89,141,314 3,908
GTAAGACCACCCAACCCTGGGCCGC..........TTTCTTAGTGGCTCTCTGGTTCCAG
3 EXON 3 89,141,315 89,141,406 1 0 92
GGCCGGCGTCACGCTCTGTGGACCGCCTCAAGGAGATGATCAAGGCAGGGATGAACATTG
CACGACTCAACTTCTCCCATGGCTCCCATGAG
INTRON 3 - 4 89,141,407 89,141,505 99
GTGTGGGGAAGTCGTGGAGGGCGGA..........TGCTCTCTCTCTCTCTCACTGCTAG
4 EXON 4 89,141,506 89,141,637 0 0 132
TACCATGCAGAGTCCATCGCCAACATTCGGGAGGCAGCTGAGAGCTTTGCAACCTCCCCA
CTCAGCTACAGACCCGTGGCCATCGCCCTGGACACCAAGGGTCCTGAGATACGCACTGGA
GTCCTGCAGGGG
INTRON 4 - 5 89,141,638 89,141,762 125
GTGAGAAGCAAGCCTCTGTCTGGGG..........TCTCTGCCCATCCCACCCCCTCCAG
5 EXON 5 89,141,763 89,141,949 0 1 187
GGTCCAGAGTCGGAGGTGGAAATTGTGAAGGGTTCACAGGTGCTGGTGACCGTGGATCCA
AAGTTCCGGACAAGGGGCGATGCAAAGACAGTGTGGGTGGACTACCACAATATCACCCAG
GTCGTTGCAGTGGGGGGCCGCATCTACATTGACGACGGGCTCATCTCCTTAGTGGTGCGG
AAAATTG
INTRON 5 - 6 89,141,950 89,142,205 256
GTACAGAAATGCTTTCTGATCTTAT..........GACACTGGCTCTTTTATACCTGCAG
6 EXON 6 89,142,206 89,142,476 1 2 271
GCCCAGAGGGACTGGTGACCGAAGTGGAACACGGTGGTTTCTTGGGCAACAGGAAGGGTG
TGAACTTACCAAATGCCGAGGTGGACCTGCCTGGGCTATCAGAGCAAGATCTTTTGGATC
TGCGCTTCGGGGTGGAGCATAATGTGGACATCATCTTTGCCTCCTTTGTACGAAAAGCCA
GTGATGTGGTGGCAGTCCGAGATGCCCTAGGGCCAGAAGGACGGGGCATCAAAATTATCA
GCAAAATCGAGAACCATGAAGGCGTGAAGAA
INTRON 6 - 7 89,142,477 89,142,591 115
GTGAGGCTTGGTCTTTGGTTCCGTC..........AGCCTGGATTCCTCCAACCACCCAG
7 EXON 7 89,142,592 89,142,742 2 0 151
GTTTGATGAGATCCTAGAAGTGAGCGATGGCATCATGGTGGCTCGGGGTGACCTTGGCAT
TGAGATCCCAGCAGAGAAGGTTTTCTTGGCTCAGAAGATGATGATTGGACGCTGCAACCT
GGCTGGCAAGCCTGTCGTTTGTGCCACACAG
INTRON 7 - 8 89,142,743 89,142,961 219
GTCTGGAGTGAACCCTTGGGCTAGG..........CTTTGCCATCCACGGTGTCATTCAG
8 EXON 8 89,142,962 89,143,114 0 0 153
ATGCTGGAGAGCATGATCACTAAGGCTCGACCAACTCGGGCGGAGACAAGCGATGTGGCC
AATGCTGTGCTGGATGGGGCTGACTGTATCATGCTGTCTGGAGAGACCGCCAAAGGCAGT
TTCCCCGTGGAGGCTGTAAAGATGCAACATGCG
INTRON 8 - 9 89,143,115 89,143,209 95
GTAGGAACTCAGTCCTGAAAAGCCG..........CAACCTGACCTACTGGTGCCTGCAG
9 EXON 9 89,143,210 89,143,376 0 2 167
ATTGCCCGGGAGGCAGAGGCCGCTGTGTACCACCGCCAGTTGTTTGAGGAGCTACGCCGG
GCAGCGCCGCTGAGCCGTGACCCAACCGAGGTCACTGCAATTGGAGCCGTGGAGGCTTCC
TTCAAGTGCTGTGCCGCAGCCATCATTGTGCTGACAAAGACTGGCCG
INTRON 9 - 10 89,143,377 89,144,825 1,449
GTGAGAAAAGTATTGGAAACAGGGC..........AGCTAACCCTCTCTCCCTCATACAG
10 EXON 10 89,144,826 89,145,007 2 1 182
CTCAGCTCAGCTTCTGTCTCGCTACCGACCTCGGGCTGCTGTCATTGCTGTGACTCGTTC
TGCCCAGGCTGCCCGACAGGTCCACCTGTCCCGAGGAGTCTTCCCCTTGCTCTACCGTGA
GCCTCCAGAGGCTGTCTGGGCAGATGATGTGGACCGAAGGGTCCAGTTTGGCATCGAAAG
TG
INTRON 10 - 11 89,145,008 89,145,466 459
GTGAGCCTTGCCCTCTCCTCCCCAG..........TGACTATCACCTTTTCCTCCACCAG
11 EXON 11 89,145,467 89,146,594 1 - 1,128
GAAAGCTTCGTGGCTTCCTCCGAGTTGGTGATCTGGTGATTGTGGTGACAGGCTGGCGAC
CTGGCTCTGGCTATACCAACATTATGCGGGTGCTGACCATATCCTGAAACGCCTCTCCCC
TTTCTGACCTAGTTGCACCCCATTTTTTTCAACCCACACCCCTCCCATAGTCCCACATCT
GCCATCTAGCCACAGTCTGGTACTTCACACAGGCCCTGAATGTCTGCGTACAATTACGCA
CCGGCCACCCAGCAGCATCAGTCGTATATCCCTGTCTCAATCCGCTCAGCTGGACTCTAA
GATGCCCTGAGCCTTTAATCCCAGCCCAGCTGGTTAATTCGATTCCTCCTGGGTCCTGAT
AATTAGAACGGGGGAGTGGAGACTGGGTAAACTTATCCAAATTCCATAGAACAATTATTT
TAAAACACTCTGTCCTCGGATATAGCCCTCATGACCAGTTCCCTAGCAAAGTGTCACCTC
CTGATGGCCTCAAGTCAGGGTAGAATACTCCTTCAGGGAGCACAGCTCCACACTTTAGGG
AAGGCTGGGGTAGATGGGTGCTGGAGAGAACTAAGCTAAACTGGCTTTTTTCTTTTCTTT
TTTTTCTGATACAAGGTCTCATTGTATAGCTCTGACTGGCCCCAGACTCCTAGAAATCCT
CCTGCCTGACCCTCCTGAGGGGGTAAGGACTGCAGGCATGAGTGACCAGCTGGACTTTAG
GTAGTCTTACTTTCTTACTGACTCCACAAACCATGGAGCCGAGCTTACGAGCCACTAATC
TGGCTGTTCTCTTGCCCACTGATCTGCTGGGTCAGATGAAATTCTTCCACAACCACTTTG
TCCCCACATACAGATCAGAAGCAAAAATGAATCTTTTCTTTTAAACCCAACTGTTTAGGT
GCAATTATAAAAAACAACTCCCACAGGCAAAGAATCCCAGACTCTCCCACCCAAAGAGTT
GTGTGGTCCTGGCCCCATGCTACAGTGTACTTCTGAAGGGGAACAGAGCGGGTGGGCAGG
GGATTATTCTTGTCCCTGAGAAGGTGGAGGGGCTACTGGCCCACCCTTCCTAGGATTGGA
TACTCCAGGCCTCCCTCTTCTTCACAACAGCAAACCCAGATGAGGATG
3' upstream sequence
AAAAAACTAAGCTCAGGCCTCCTGCTCCCCCCTACCCCCCCCCCCCCCCGGCCACCACCT
CATCACAGAATTTGAGTATTGCTGCAGATGGCATTGTGCAAGGACCACAAAGATGTTCCC
CAGGCCCCTACCAGAAGGTGGGGAGGACAAAGGAATGAGTGAATAAGTGAACAAGTCAAA
TTAGCAAATGAATAAATAAAATTAATAAACGACCAAATAAATAAGACAAAGAGGGAAAGA
TAAAAGGTCACATGAGGATTCAGCCCCTGGCCCCCTACCTGGGGGGAACTAGGCTGGCAC
AGTAGGTAAGGAGGTGCCGCGTGCCCCCTAGCTTTAGGGGCAACACCACTGAGGCAGGGG
GCACAGTGAAGAGCAGCTTCTAGCTCATAAAGGTAGTGCGTCCACACAGGAGCTGCGGAG
GGCAGACTACAGTGGGCAGACGTGAATTCTCACTTGGTGTGGACAAGGAGGGCCCACAGG
TGCCAGTCAGAGGGTCGATGTTCACACCCAGGGCTCTAGACATCTGTTGGCTGTACTAGA
TAATTGATGGTACCCAGCTACGACAAAGGAGATGGGAAGAGAGGACGCACTGGCACCACC
TGCAGGGTCACTGACAGGGAGACAGCCGTCTAGTTACTCGGCAGTGATGGAGGCAGCAAG
TACTTGTGCTTAATAAAGGCAGGGCTGTGGGCCCAGGCCTGCGCCTGGCAGGACCGTGGC
CTGGGGACACCCTTGTTAAGGGGCTTCGAGTTATTTCTACTTGGCAGTGGATACACAGTA
CCTAGCACAGTGCCTTGAACATGGTAGGCATGGGGTACCTATGACAAATGGGTATGTGAT
TAGGATTAGCAGGCTGCAGCTGCTTTGAGCTGAGGACACAGAGAACAGCTTTGTGGTGAT
AAAGGGCAGTATGTTAGGTCCCCCACAGCCTTCCCCCAAGGGGCGTCTACCCTCGGGCAC
ACGTTATTGCGTGCCAATAGCTAAGGCCAGTGTAACCTAG..........

Sequence Detail Report

Gene Symbol (Gene ID) Pklr (ENSMUSG00000041237)
Transcript ID ENSMUST00000047111
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 575 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information