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Target CDS Information

Gene Symbol (Gene ID) A830018L16Rik (ENSMUSG00000057715)
Cross Reference
CCDS CCDS35513.1
Clone_based_vega_transcript AC103635.1-001
EMBL AK034391, AK081222, AK081622, ...show all
Fantom 9330002C10, 9330185L09, C030011I11, ...show all
GO GO:0003674, GO:0005575, GO:0008150
goslim_goa GO:0003674, GO:0005575, GO:0008150
MGI_trans_name A830018L16Rik-001
OTTP OTTMUSP00000046228
OTTT OTTMUST00000085549
protein_id BAC28694.1, BAC38170.1, BAC38273.1, ...show all
RefSeq_mRNA NM_177173.6
RefSeq_peptide NP_796147
UCSC uc007ahx.2
UniParc UPI00000EA3FD
Uniprot/SWISSPROT Q8BZJ8
Vega_transcript AC103635.1-001, OTTMUST00000085549
Vega_translation 178713, OTTMUSP00000046228
Definition protein_id:ENSMUSP00000043857
translation:
MASRQQTRIQAYLEKNKIGPLFEELMTKLITETPDQPIPFLIDHLQSKQGNQGQLQRALS
GSAALWAESESSEPKGTRRDFRSYDKPWQMNAKKPKKSKSDLAVSNISPPSPDSKSLPRS
VDHLKWNWRTKPQSRDFDELNHILQESKKLGKALENLSRSIAISDELDKETLAFNSSLLR
PRVIGEWIGRAENDADPLAAEMLQPPVPRSKNDSWESEDSSSSPAGSLKMEPKTKGLKQQ
QQQHKKLLAAMLSQDSFESIHSPTPSVIEEDIDNEDDAMELLENLDDLRMEGVTTLVLSG
SKFNQGRPTHPAEPQAKVTLNICSRLQGDNLMERTEDTLQILHTPDEIIPDSLDSLPGTE
ETLMEEGEDFEKTSNLTEPGEASSGAHSLKSYMEEDESLKQLQVVHQPWLLPSDTESEGI
EAEQDKRSADLLCVPCSSCPTLIYSGLSVKPAKEVASGP

Chromosome 1
Length
Position(start - end)
560,396
11,414,569 - 11,974,966
Orient to Chromosome plus
Link Location : (1:11414569-11974966)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) A830018L16Rik (ENSMUSG00000057715)
Transcript ID ENSMUST00000048613
Reports
substitution
cSNPs3
Insertion266
Deletion368
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num3
non-synonymous num0
synonymous substitutions 11518591 (p.Thr77Thr), 11588451 (p.Ala195Ala), 11588532 (p.Ser222Ser),
non-synonymous substitutions
B6 transcript
(ENSMUST00000048613)
MASRQQTRIQAYLEKNKIGPLFEELMTKLITETPDQPIPFLIDHLQSKQGNQGQLQRALS
GSAALWAESESSEPKGTRRDFRSYDKPWQMNAKKPKKSKSDLAVSNISPPSPDSKSLPRS
VDHLKWNWRTKPQSRDFDELNHILQESKKLGKALENLSRSIAISDELDKETLAFNSSLLR
PRVIGEWIGRAENDADPLAAEMLQPPVPRSKNDSWESEDSSSSPAGSLKMEPKTKGLKQQ
QQQHKKLLAAMLSQDSFESIHSPTPSVIEEDIDNEDDAMELLENLDDLRMEGVTTLVLSG
SKFNQGRPTHPAEPQAKVTLNICSRLQGDNLMERTEDTLQILHTPDEIIPDSLDSLPGTE
ETLMEEGEDFEKTSNLTEPGEASSGAHSLKSYMEEDESLKQLQVVHQPWLLPSDTESEGI
EAEQDKRSADLLCVPCSSCPTLIYSGLSVKPAKEVASGP*
MSMv4 transcript
MASRQQTRIQAYLEKNKIGPLFEELMTKLITETPDQPIPFLIDHLQSKQGNQGQLQRALS
GSAALWAESESSEPKGTRRDFRSYDKPWQMNAKKPKKSKSDLAVSNISPPSPDSKSLPRS
VDHLKWNWRTKPQSRDFDELNHILQESKKLGKALENLSRSIAISDELDKETLAFNSSLLR
PRVIGEWIGRAENDADPLAAEMLQPPVPRSKNDSWESEDSSSSPAGSLKMEPKTKGLKQQ
QQQHKKLLAAMLSQDSFESIHSPTPSVIEEDIDNEDDAMELLENLDDLRMEGVTTLVLSG
SKFNQGRPTHPAEPQAKVTLNICSRLQGDNLMERTEDTLQILHTPDEIIPDSLDSLPGTE
ETLMEEGEDFEKTSNLTEPGEASSGAHSLKSYMEEDESLKQLQVVHQPWLLPSDTESEGI
EAEQDKRSADLLCVPCSSCPTLIYSGLSVKPAKEVASGP*
homology100.00 (460 / 460)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) A830018L16Rik (ENSMUSG00000057715)
Transcript ID ENSMUST00000048613
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TTCGAGTTATCAATAGTGGCTAATAGCCCAATTCCTCTAGTAGATTTCGT
GTATGTGAATTATTAAAGGCAATTATTATAATACTTCCTGGAACAATCCATTCTCATCTT
AACTATTGCACAATGCTTAGATAATTTAAAACGGAGAGAAAAAGCTTGGACAGATACAGG
TCACAGAAACCTGAACACAGTGCAGAAAAAGAAGAAATCTACACTGTCGCAGTTGGTTTT
AAAGAAACCCGTGCCTATTATTGTAGAGACAGCCAACAGTTTTAGTATAAACGTTCTGAT
TTGGCAATACAAAATGGTTTAGAACCAGACAACTCATCTTTGGGGTTTTAGTGCTTTATA
TCGTTTTTTGGTTTTTTAAATGCAAAGAACTCTACACGGAACCTTGTGATAACTGCAGAT
CTTAACCTTGAAAAGTCGTCTCATAGTAAGAAGGTATGAGGTAAAGTTGATGTGCTTCTG
AAGTATCTGGAGGAATAACTGTTGGGTGGGAGCTCAGAGCCCCTGAGCTGTAGCCAGAGG
TGTAGCAGACAGAGCTGAAGGTGTAGGCAAACTTGGAAGCAGAGAGAGCTGGCTTGCTTT
TGTTTCATCTCCCTGCCAAATGCCTAAGGGTTGCTTCCAGCCTTTGGGTGTCTGTACTTC
GGGAATTTTCAATCAGTTCTCAGGCAGCAACGCCGGTTGTGGCTGACTTGCTCAAGGCCA
AGATAGATATATCTGTTCCTTTCTTTTTTCTTTTTAACATAAGCAACTTTGTTTTCGCGG
CAAAACCCACCCATAGTTCTCATCTCCGGCTTTTTCTCATCCCAGGCTAGTGAAGGCAGA
GCGCTGGGCCAGGAGAAGATCAAGCTGAGTGGTTTGGAACTGCGGGTGTAGCTGCCAAGG
AGTAGCCAACAAGCACCAGATTTATGTGCACTTTGAAAGAAGCACCTTTACCATTGGCTT
TTTGAGCGGCTCTGTCGCTAGGGAGCGAGCACCGCCTCGGGGAGCAGCTT
1 EXON 1 11,414,105 11,414,637 - 0 533
GGGTGCTGGTTCCTGGCAGCCAGGAGCTGGGCGCACACCCTGGCGCGCTCTGGGCGGTTC
CGCGCGCTGTCGCCCCTGCGGCCCGCGCGGTCCCCCGCTCGGCTCGCGGAGGCGCTGCAC
AGACACTCGCCTTCGGCCACCGGCTCCTGCTGCTGCTGCCGCCCAGAGGACAGACCAGCC
TCTGCCCGCGATTTCGCCTCGGCGGCGGCGCTGCGGAAAGCGGAGAGCGGGTGGGCGCGA
GCTGCAGGATGCGATGTAGTTCTCTCCTTGCCTCGGAGTTGTCTGAGTTGGTAGAGCCTC
GCCCGGGTTCCCTGAGCCCTGCTCCCTTCGGGCTCGCTGCTAACGGAGTTGCTAGCCATC
GCTGTGCCAGAAAGCTCAGGCTCGGAGCTCCTGCCCTGGGGTAGAGTAGAGCTGTCCCCA
GCCGAGGCGCATTGTCTTCTCTCTGCTGACCCATCTGTTTTCTCATGGCATCTCGTCAAC
AAACCCGAATCCAGGCTTACCTGGAGAAAAACAAGATCGGTCCTCTGTTTGAG
INTRON 1 - 2 11,414,638 11,511,917 97,280
GTAAGGAGCCCTGGTGGGGAATGGT..........AATGCTTGTCTTGTTCTGTCTTTAG
2 EXON 2 11,511,918 11,512,065 0 1 148
GAATTAATGACCAAGTTAATAACTGAGACACCTGACCAGCCAATTCCATTTCTCATTGAC
CATCTTCAATCTAAACAAGGAAACCAAGGACAACTGCAAAGAGCTTTGTCAGGGTCAGCA
GCTCTCTGGGCAGAAAGTGAATCATCAG
INTRON 2 - 3 11,512,066 11,518,577 6,512
GTAATTGGGTGGAGGAAACCAAACT..........ATCTGTTTATATTTTGTTTTAACAG
3 EXON 3 11,518,578 11,518,709 1 1 132
AACCCAAAGGAACAAGAAGGGATTTTAGAAGCTATGATAAACCTTGGCAGATGAATGCAA
AGAAGCCTAAAAAATCAAAAAGTGATCTGGCTGTATCTAATATTTCTCCTCCATCACCAG
ACTCCAAATCAT
INTRON 3 - 4 11,518,710 11,545,153 26,444
GTAAGTTTGTTACTTAAATGTTATT..........AAATAACCGTTTCTTTTAAACATAG
4 EXON 4 11,545,154 11,545,282 1 1 129
TGCCAAGGTCAGTAGACCATCTTAAGTGGAACTGGCGGACTAAACCACAAAGCCGTGATT
TTGATGAATTGAACCACATCCTTCAAGAGAGCAAGAAGCTGGGGAAAGCCCTTGAGAATC
TCTCTCGAA
INTRON 4 - 5 11,545,283 11,562,962 17,680
GTAAGTTCGTTTTCTTGACAATAAT..........CTTGTAAATCTCTTTTGAATCCCAG
5 EXON 5 11,562,963 11,562,991 1 0 29
GTATCGCGATTTCAGATGAACTTGATAAG
INTRON 5 - 6 11,562,992 11,588,373 25,382
GTAAGCTGTGCTCTGTATCTAAAGA..........GCTTTTTCTCTCTTTGCACCTGCAG
6 EXON 6 11,588,374 11,588,546 0 2 173
GAAACATTGGCTTTCAATTCCTCTCTTCTGAGACCTCGTGTGATTGGGGAGTGGATCGGC
AGGGCAGAAAATGATGCCGATCCCCTTGCAGCTGAAATGCTGCAGCCGCCGGTTCCGCGG
AGTAAGAATGACTCATGGGAAAGTGAAGACAGCAGCTCTAGTCCAGCAGGAAG
INTRON 6 - 7 11,588,547 11,596,150 7,604
GTGAGGATCTCCTTCGTGAATCCGT..........AACTAACCTATCAATATTTCTTCAG
7 EXON 7 11,596,151 11,596,317 2 1 167
CTTAAAGATGGAGCCCAAGACGAAAGGATTAAAACAGCAGCAGCAGCAGCACAAGAAACT
CCTGGCTGCAATGCTTTCCCAGGACTCCTTCGAGTCCATCCATAGCCCCACACCATCTGT
AATAGAAGAAGACATTGATAATGAAGACGATGCAATGGAGTTGCTGG
INTRON 7 - 8 11,596,318 11,747,964 151,647
GTAATTTTAAAAATTAATAACTTCT..........TCTGTCACTGTTTGTGTTGTTGCAG
8 EXON 8 11,747,965 11,748,091 1 2 127
AAAATCTGGATGACTTAAGGATGGAGGGTGTAACCACTCTGGTACTTTCGGGGAGCAAAT
TTAACCAAGGTCGTCCTACTCACCCTGCCGAGCCACAGGCCAAAGTCACACTGAACATCT
GTTCAAG
INTRON 8 - 9 11,748,092 11,798,480 50,389
GTGTGCCAGGTAAAACTTATTCTTG..........CCAATGATGATTTTTAATTATTTAG
9 EXON 9 11,798,481 11,798,566 2 1 86
GCTTCAAGGAGACAACTTGATGGAAAGAACAGAAGACACACTACAAATACTTCATACTCC
AGATGAGATAATCCCAGACTCATTAG
INTRON 9 - 10 11,798,567 11,829,814 31,248
GTAAGTTTTAAATTCAAAAGTGTTT..........CTTTTATTTTTAAAAATTAAAATAG
10 EXON 10 11,829,815 11,829,891 1 0 77
ATTCTTTACCTGGGACAGAAGAAACTCTTATGGAGGAAGGTGAAGATTTTGAGAAAACAT
CAAACTTAACAGAACCA
INTRON 10 - 11 11,829,892 11,933,543 103,652
GTAAGTATATTAATTTGTTTTTGTT..........CTCTCCAACCTCTGTTTGCCTCTAG
11 EXON 11 11,933,544 11,933,591 0 0 48
GGAGAAGCCTCTAGTGGAGCACACTCTTTGAAATCCTACATGGAAGAA
INTRON 11 - 12 11,933,592 11,950,962 17,371
GTGAGTTTCTAGGGACTCTACCATA..........TCTAAAATAATCTTTTCTCTGACAG
12 EXON 12 11,950,963 11,951,056 0 1 94
GATGAGTCTTTGAAGCAATTGCAGGTTGTGCATCAGCCATGGCTTTTACCAAGTGACACA
GAAAGTGAAGGAATTGAAGCAGAGCAAGACAAAC
INTRON 12 - 13 11,951,057 11,972,045 20,989
GTAAGTAGATTCCACGTTCAAATCA..........TACCCCTTCTCTTTCAATTTCACAG
13 EXON 13 11,972,046 11,972,102 1 1 57
GTTCTGCTGATCTTCTCTGTGTGCCATGCTCGTCCTGTCCTACCCTGATCTATTCAG
INTRON 13 - 14 11,972,103 11,974,922 2,820
GTATGTTTGCTCAGGGAATTTGTAG..........ATTTTTATTTTTTATTCCTCTACAG
14 EXON 14 11,974,923 11,975,901 1 - 979
GTCTGTCTGTGAAACCGGCAAAGGAAGTTGCAAGTGGTCCTTAAGAATATTATAGCTGAC
TGAATCCTTACTTATTGTCCTAATTTGATGTACTAAATGTAATATCTAAAGAAATGTCAT
TTTCCTAATGTCAATAATAAACAAGAACTCTTGTAAGTAGGGCGTGCACTAATGTATAGT
ACAAGAACACTAATTCAGGCACAGCAGTCTGTTGTCTATGGGATTTGATACTCTTTGATC
TGGTCAGTGTCTTGGGTTTATGTTACTTTATATGTAGTTATTAAAATAGTGCTTAAAATT
TTCTGGATTTTAATTTAGCTAGGGTTTTCTACTTCTATTTTTATAATAATAGCTCATATT
TTGGATTAATACACATTATACTTGCCCACATGTGCCACATTAGTCCTGTGCAGCAGTTGA
CTGCTTAGTGTTAACCTCTTTGCATCAGGAAGAAATTTATCCCCCACAACTGTCCCAATA
TGATTATATTACCTATTCCTATTTAAATATGATGGGTATGTTACTTCAGTAAAGCAAACT
AATGAATAATGAAATGCATGCCCTCAGGACACTTGCAAGGAAAAATCACTTGATTATGTA
TGCAATTATTGAGCTACACCTTACTTTTGGAATGTGCTTTGTACTTATTCTAAATGAATT
GATATCAGTCAATCTATTGACTATATCTGCTATATTTTATCTTATTTGTCTTAATGCAAG
TTTTTTTTGGTGGGCTTTAATGAATTAAGGCTAAATTATACAACTCTGTATAACTGTAAA
AGAAACAATTGTTAAAGACTCGACCATAGCTAAGGAATAAACAAGCAGTTTCTGACTTCT
GAATTAAGTCATGTTTAAAATATAAATACAGAAATTAGAAATGATGTAATAAATTTTCTT
ACATTTTTTTCTTGTATGATGAAACTAATTTTAGTAATAAGTATTTTTATAAATGGCAAT
AAATTAAAGGTTATGTATC
3' upstream sequence
AGTTGCTGTTCTTGGAGGTGACAACGTGACTGAGTACCATCAACCTAAAGGAGAAGGTTT
TATTTTGATCCATGTTTTTGGAGGTTTCAGAGCATGGTCTACTAGCTTCTTTGCCTGTAG
TGAAGCAGATTGTCATGGCAGAAGGAATATGTGACATGAGATAACTTACTTCATGAAGGC
CCAGAAGCATAGAGAGTGACAGGCAGGAGCAACATATACCTTTCAGTGACCCACTTCCTC
CAGTCAGGTCCACCTTTTAAGTTCCACTACGTTCCAATAACCCATTAACTGTCCTTTCAT
AAATAGATCACCCCACTGATAAAGGTCTGAGAACTTAAGAGCCAATTGCTTCTCTAAAAC
CTTACTTATGGAAATGTAATTGGGAACCCTACAAATCTTGGAGTGGGGACATTTTTATGC
AAATTATAACAGCTTGGAAAACAATTTTTAAGCAAAAAGCCAGAAAGTAGGAGATTGGGA
TTATAGGATCAGATGCCAGGCAGTGGTGGCACACACATTTGATCCCAGCACTTAGCAGGC
AGAGGCAGGTGGATCTCTGTGAGTTTGAAGCCAGCCTGATGTACAGAGCGAGTTCCATGA
CAGCTAGGGTTACTCAGCGAAACCCTGTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGGCAGAGACAGAGACAGATAGAGAGAGAGGCAGAGACAGAGACAGATAGAG
AGAGAGACAGAGACAGAGAGACAGAGAGACAGAGACAGACAGAGAGACAGAGAGACAGAT
GGAGAGACAGAGAGATGGAGAGACAGAGAGATGGAGAGACAGAGATTGAGATTATGAAAA
GGAGTTTCAAAAATGATTCAACTGAGGATTTAATTTTTTTTTCTTGTTAAAAATTTTTGG
TTTAAAATATGTCACAAAAATGTGTTTATCTGAAAGCCATGTTTTCCTTCAATAATGACA
TATTCAAACTTGGCTTTCCATTTGCCAACGTGCCTTATAT..........

Sequence Detail Report

Gene Symbol (Gene ID) A830018L16Rik (ENSMUSG00000057715)
Transcript ID ENSMUST00000048613
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 460 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information