MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Ecm2 (ENSMUSG00000043631)

Cross Reference

CCDS	CCDS26502.1
EMBL	AK038812, AK040995, AK134746, ...show all
Fantom	6330547B13, A230065E01, A530057I08
GO	GO:0005518, GO:0005578, GO:0005614, ...show all
goslim_goa	GO:0003674, GO:0005575, GO:0005576, ...show all
MGI_trans_name	Ecm2-201
protein_id	AAH65151.1, AAH89559.1, BAE20541.1, ...show all
RefSeq_mRNA	NM_001012324.2
RefSeq_peptide	NP_001012324
UCSC	uc007qjl.1

UniParc	UPI000023302B
Uniprot/SWISSPROT	Q5FW85

Definition

protein_id:ENSMUSP00000060402
translation:

MKLAVLFCFILLIVLQTDCERGTRRQRRRMHQRRLRKSSSFHLRANRQLEVQQTTAAPDA
RLPTANSDYSVEENIESLLSNLGVESSYSVLPGKKGYCFVKGMIMYNKAVWSPEPCTTCL
CSNGRVLCDETECHPKACPYTIKPEGECCPICSDAEQESINKLHKQVPPPQMEMDQVAIK
EALQSEEDEEIAEGHKEHKKETSVPTKIHGDGERTERKLRPEKEGRSAHQPLYHGRREEE
ESKEETEREGEEEEEEEEEEEEDAIRGDVFRMSSRVIPGTPRGRPRLPRSCSLSYRTISC
VHADFTEIPPITAPEVTNLELVGNSIISIPDEAFNGLPNLERLDLSRNNITSSGIGPKAF
KSLKKLMRLNMDGNNLVHIPSDLPSTLEELKINDNNLQAIDEKSLSDLNQLVTLELEGNN
LSEINVDPLAFQSLESLSYLRLGRNKFRIIPQGLPASTEELYLENNQIEEITEICFNHTR
KITMIILRYNKIEESRIAPLAWINQENLESIDLSYNKLYHVPSYLPKSLLHLVLIGNQID
RIPGYVFGHMQPGLEYLYLSFNRLSDDGVDLVSFYGAYHSLRELFLDHNDFKSIPPGIQD
MKALHFLRLNNNKIRNIHPEQICNAEEDEDSALEHLHLENNYIRTREISSYAFSCIRLYS
SIVLKPQHIK

Chromosome

Length
Position(start - end)

16,607
49,514,823 - 49,531,431

Orient to Chromosome

plus

Link

Location : (13:49514823-49531431)
/

Detail Map

name	Cenpp (ENSMUSG00000021391)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Cenpp note : centromere protein P [Source:MGI Symbol;Acc:MGI:1913586]

name	Ecm2 (ENSMUSG00000043631)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Ecm2 note : extracellular matrix protein 2, female organ and adipocyte specific [Source:MGI Symbol;Acc:MGI:3039578]

name	Cenpp (ENSMUSG00000021391)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000021818

name	Ecm2 (ENSMUSG00000043631)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000051504

name	Cenpp (ENSMUSG00000021391) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS26501.1 Uniprot/SWISSPROT:Q9CZ92 RefSeq_peptide:NP_079771 RefSeq_mRNA:NM_025495.3 Uniprot/SPTREMBL:B2RVI6 UCSC:uc007qjk.1 Fantom:1700022C02 Fantom:2810036G11 Fantom:4921518G09 Fantom:4921520E21 EMBL:AK006234 EMBL:AK012863 EMBL:AK014919 EMBL:AK076577 EMBL:BC094280 EMBL:BC147207 EMBL:BC147208 EMBL:CH466546 GO:GO:0000775 GO:GO:0003674 GO:GO:0005515 GO:GO:0005575 GO:GO:0005634 GO:GO:0008150 GO:GO:0034080 MGI_trans_name:Cenpp-201 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005694 goslim_goa:GO:0006461 goslim_goa:GO:0008150 goslim_goa:GO:0022607 goslim_goa:GO:0043226 goslim_goa:GO:0051276 goslim_goa:GO:0065003 protein_id:AAI47208.1 protein_id:AAI47209.1 protein_id:BAB24472.1 protein_id:BAB28519.1 protein_id:BAB29620.1 protein_id:BAC36401.1 protein_id:EDL41079.1 Reactome:R-MMU-162582 Reactome:R-MMU-1640170 Reactome:R-MMU-194315 Reactome:R-MMU-195258 Reactome:R-MMU-2467813 Reactome:R-MMU-2500257 Reactome:R-MMU-2555396 Reactome:R-MMU-5663220 Reactome:R-MMU-606279 Reactome:R-MMU-68877 Reactome:R-MMU-68882 Reactome:R-MMU-68886 Reactome:R-MMU-69278 Reactome:R-MMU-73886 Reactome:R-MMU-774815 UniParc:UPI0000027672
definition	note : transcript_id=ENSMUST00000021818 protein_id : ENSMUSP00000021818 translation : MDSETRELRALEAEVAALQRECRMLQNAGEKASGAWKSFQKISQSDSEEWESLKDLRSQLEHLRSEHSFLSKLTGFNIRNYSKMEDIVNTEETEKDTKKVLQKHRLSGNCNMVTFQLEFEVLEMETKEKKSSIITDLSIIMEPTEYSELSEFASRAEEKRDLLMFFRSLHFFVEWCEYRENTFKHFKEKYPDTVYLLEGTCSHCMEIRSTRQPGFELVIVWKIQIDEEGMVFPKLDLLTKVPERALGLDKNRVIETAPLSFRSLLGVLGIEAALDSLIRLFSGDNN

name	Ecm2 (ENSMUSG00000043631) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS26502.1 Uniprot/SWISSPROT:Q5FW85 RefSeq_peptide:NP_001012324 RefSeq_mRNA:NM_001012324.2 UCSC:uc007qjl.1 Fantom:6330547B13 Fantom:A230065E01 Fantom:A530057I08 EMBL:AK038812 EMBL:AK040995 EMBL:AK134746 EMBL:BC065151 EMBL:BC089559 GO:GO:0005518 GO:GO:0005578 GO:GO:0005614 GO:GO:0008201 GO:GO:0010811 GO:GO:0030198 GO:GO:0070052 MGI_trans_name:Ecm2-201 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005578 goslim_goa:GO:0008150 goslim_goa:GO:0030198 goslim_goa:GO:0043167 protein_id:AAH65151.1 protein_id:AAH89559.1 protein_id:BAE20541.1 protein_id:BAE20587.1 protein_id:BAE22265.1 UniParc:UPI000023302B
definition	note : transcript_id=ENSMUST00000051504 protein_id : ENSMUSP00000060402 translation : MKLAVLFCFILLIVLQTDCERGTRRQRRRMHQRRLRKSSSFHLRANRQLEVQQTTAAPDARLPTANSDYSVEENIESLLSNLGVESSYSVLPGKKGYCFVKGMIMYNKAVWSPEPCTTCLCSNGRVLCDETECHPKACPYTIKPEGECCPICSDAEQESINKLHKQVPPPQMEMDQVAIKEALQSEEDEEIAEGHKEHKKETSVPTKIHGDGERTERKLRPEKEGRSAHQPLYHGRREEEESKEETEREGEEEEEEEEEEEEDAIRGDVFRMSSRVIPGTPRGRPRLPRSCSLSYRTISCVHADFTEIPPITAPEVTNLELVGNSIISIPDEAFNGLPNLERLDLSRNNITSSGIGPKAFKSLKKLMRLNMDGNNLVHIPSDLPSTLEELKINDNNLQAIDEKSLSDLNQLVTLELEGNNLSEINVDPLAFQSLESLSYLRLGRNKFRIIPQGLPASTEELYLENNQIEEITEICFNHTRKITMIILRYNKIEESRIAPLAWINQENLESIDLSYNKLYHVPSYLPKSLLHLVLIGNQIDRIPGYVFGHMQPGLEYLYLSFNRLSDDGVDLVSFYGAYHSLRELFLDHNDFKSIPPGIQDMKALHFLRLNNNKIRNIHPEQICNAEEDEDSALEHLHLENNYIRTREISSYAFSCIRLYSSIVLKPQHIK

name
type	misc_feature
link
xref
definition	note : contig AC123954.4 1..143415(-1)

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Ecm2 (ENSMUSG00000043631)
Transcript ID	ENSMUST00000051504

Reports
substitution
cSNPs	5
Insertion	12
Deletion	14
SNPs	-1kb 49501160(c.-13663C>T), 49501191(c.-13632T>C), 49502019(c.-12804C>T), 49502169(c.-12654C>G), 49502240(c.-12583A>G), 49502485(c.-12338A>G), 49502679(c.-12144G>A), 49503114(c.-11709A>C), 49503879(c.-10944A>T), 49503995(c.-10828T>C), 49504170(c.-10653A>G), 49504172(c.-10651G>A), 49504300(c.-10523T>C), 5'UTR CDS 49518378(c.354C>T), 49520681(c.576T>G), 49520748(c.643A>G), 49520786(c.681A>G), 49520791(c.686A>G), 3'UTR 49504841(c.-194G>A), 49531564(c.133T>C), 49531639(c.208T>C), 49532419(c.988G>T), 49532423(c.992G>T), 49532427(c.996G>T), 49532431(c.1000G>T), 49532435(c.1004G>T), 49532637(c.1206T>C), INTRON 49505558(c.-30+553G>A), 49505923(c.-30+918G>A), 49506156(c.-30+1151A>G), 49506500(c.-30+1495A>G), 49506580(c.-30+1575C>A), 49506917(c.-30+1912C>A), 49507117(c.-30+2112A>C), 49507279(c.-30+2274A>T), 49507317(c.-30+2312A>C), 49507427(c.-30+2422T>C), 49507625(c.-30+2620G>C), 49507762(c.-30+2757C>T), 49508227(c.-30+3222G>A), 49508302(c.-30+3297C>G), 49509378(c.-30+4373T>C), 49509668(c.-30+4663G>A), 49509928(c.-29-4866A>T), 49510127(c.-29-4667T>C), 49510221(c.-29-4573A>G), 49510950(c.-29-3844C>G), 49510985(c.-29-3809G>A), 49513234(c.-29-1560A>G), 49513577(c.-29-1217T>C), 49514383(c.-29-411A>G), 49514564(c.-29-230T>C), 49514612(c.-29-182C>G), 49515247(c.277+148A>C), 49515370(c.277+271T>A), 49515517(c.277+418G>A), 49516616(c.277+1517T>C), 49516648(c.277+1549T>A), 49517041(c.278-1261T>C), 49517127(c.278-1175T>A), 49517253(c.278-1049A>C), 49517326(c.278-976A>T), 49518546(c.466+56T>G), 49518588(c.466+98T>A), 49518823(c.466+333C>T), 49519381(c.466+891T>G), 49520204(c.467-368C>T), 49521175(c.967+103T>C), 49521177(c.967+105G>A), 49521200(c.967+128G>A), 49521578(c.967+506G>T), 49521622(c.967+550A>G), 49522006(c.968-770T>C), 49522018(c.968-758C>A), 49522381(c.968-395G>C), 49522395(c.968-381T>C), 49524284(c.1084-39G>A), 49525835(c.1219+1377T>C), 49526298(c.1220-1312T>A), 49526368(c.1220-1242C>T), 49526996(c.1220-614G>A), 49527151(c.1220-459A>G), 49527240(c.1220-370T>C), 49528795(c.1378-79A>G), 49529307(c.1517+294G>A), 49529386(c.1517+373A>G), 49529456(c.1517+443A>G), 49529673(c.1518-392G>A), 49529838(c.1518-227C>T), 49529855(c.1518-210T>C), +1kb 49534108(c.2677T>C), 49534153(c.2722A>T), 49534200(c.2769A>G), 49534242(c.2811C>T), 49534680(c.3249G>A), 49534792(c.3361A>G), 49535011(c.3580C>G), 49535050(c.3619A>G), 49535129(c.3698A>C), 49535941(c.4510G>A), 49535943(c.4512C>T), 49537131(c.5700T>A), 49537519(c.6088C>T), 49537778(c.6347C>A),
Insertions	-1kb 49502732 (c.-12091_-12090insGGACCGGG), 49503267 (c.-11556_-11555insA), 49504182 (c.-10641_-10640insA), 5'UTR CDS 3'UTR INTRON 49505316 (c.-30+314dupA), 49505576 (c.-30+572_-30+578dupTATTAAA), 49507502 (c.-30+2498dupG), 49516802 (c.278-1489_278-1487dupCCA), 49519952 (c.467-612dupT), 49521233 (c.967+167_967+168dupAA), 49526500 (c.1220-1104dupA), 49530403 (c.1844+17dupT), +1kb 49537461 (c.6030_6031insAAAC),
Deletions	-1kb 49503709 (c.-11113delT), 5'UTR CDS 49520876 (c.783_785delAGA), 3'UTR INTRON 49510043 (c.-29-4740_-29-4739delAA), 49516673 (c.277+1575_277+1578delTTTT), 49517282 (c.278-1015delT), 49517464 (c.278-834_278-828delTGTAAAA), 49520227 (c.467-341_467-337delGGTTA), 49523322 (c.1083+443delA), 49524588 (c.1219+151_1219+153delGTT), 49525772 (c.1219+1328delA), +1kb 49536069 (c.4639delC), 49536498 (c.5068_5070delACT), 49536576 (c.5146_5148delAAC), 49536581 (c.5151_*5153delCAA),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	3
non-synonymous num	2
synonymous substitutions	49518378 (p.Thr118Thr), 49520681 (p.Ala192Ala), 49520786 (p.Ser227Ser),
non-synonymous substitutions	49520748 (p.Thr215Ala), 49520791 (p.His229Arg),
B6 transcript (ENSMUST00000051504)	MKLAVLFCFILLIVLQTDCERGTRRQRRRMHQRRLRKSSSFHLRANRQLEVQQTTAAPDA RLPTANSDYSVEENIESLLSNLGVESSYSVLPGKKGYCFVKGMIMYNKAVWSPEPCTTCL CSNGRVLCDETECHPKACPYTIKPEGECCPICSDAEQESINKLHKQVPPPQMEMDQVAIK EALQSEEDEEIAEGHKEHKKETSVPTKIHGDGERTERKLRPEKEGRSAHQPLYHGRREEE ESKEETEREGEEEEEEEEEEEEDAIRGDVFRMSSRVIPGTPRGRPRLPRSCSLSYRTISC VHADFTEIPPITAPEVTNLELVGNSIISIPDEAFNGLPNLERLDLSRNNITSSGIGPKAF KSLKKLMRLNMDGNNLVHIPSDLPSTLEELKINDNNLQAIDEKSLSDLNQLVTLELEGNN LSEINVDPLAFQSLESLSYLRLGRNKFRIIPQGLPASTEELYLENNQIEEITEICFNHTR KITMIILRYNKIEESRIAPLAWINQENLESIDLSYNKLYHVPSYLPKSLLHLVLIGNQID RIPGYVFGHMQPGLEYLYLSFNRLSDDGVDLVSFYGAYHSLRELFLDHNDFKSIPPGIQD MKALHFLRLNNNKIRNIHPEQICNAEEDEDSALEHLHLENNYIRTREISSYAFSCIRLYS SIVLKPQHIK*
MSMv4 transcript	MKLAVLFCFILLIVLQTDCERGTRRQRRRMHQRRLRKSSSFHLRANRQLEVQQTTAAPDA RLPTANSDYSVEENIESLLSNLGVESSYSVLPGKKGYCFVKGMIMYNKAVWSPEPCTTCL CSNGRVLCDETECHPKACPYTIKPEGECCPICSDAEQESINKLHKQVPPPQMEMDQVAIK EALQSEEDEEIAEGHKEHKKETSVPTKIHGDGERAERKLRPEKEGRSARQPLYHGRREEE ESKEETEREGEEEEEEEEEEEEDAIRGDVFRMSSRVIPGTPRGRPRLPRSCSLSYRTISC VHADFTEIPPITAPEVTNLELVGNSIISIPDEAFNGLPNLERLDLSRNNITSSGIGPKAF KSLKKLMRLNMDGNNLVHIPSDLPSTLEELKINDNNLQAIDEKSLSDLNQLVTLELEGNN LSEINVDPLAFQSLESLSYLRLGRNKFRIIPQGLPASTEELYLENNQIEEITEICFNHTR KITMIILRYNKIEESRIAPLAWINQENLESIDLSYNKLYHVPSYLPKSLLHLVLIGNQID RIPGYVFGHMQPGLEYLYLSFNRLSDDGVDLVSFYGAYHSLRELFLDHNDFKSIPPGIQD MKALHFLRLNNNKIRNIHPEQICNAEEDEDSALEHLHLENNYIRTREISSYAFSCIRLYS SIVLKPQHIK*
homology	99.70 (671 / 671)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Ecm2 (ENSMUSG00000043631)
Transcript ID	ENSMUST00000051504


..........TATTCACAATTTTCTTGTTTCAAAATTTGATATGTAGAGGCAAGTATCAT
TCACCACATAAGTCACTTATGATTTATCATCATCTGCAAGTATGTTAAGTCTTTGTCTTT
ATTATTACTAAATGTCAAGTCTATGTGTCTTGATAGTAGTTGGTTGTCATCTCACCTGGT
TCTTCCACAGAGTAACTCAAGCACCCAGCAGTGCTGGGTGCTTTTCTAACTTTCTTATGG
AGAGATAAAGAAACAGGAGGCCAAAGCACACAACTAATTTGCTAGAATAACCAGTAATGA
GGAGGCTTGCTGCTCCCTTATACATTAAATGTGCATGCACACACACACACACACACACAC
ACACACACACGCACACACAGAGGAAAAAAACCTAGGTGTAATGTTGCATACTTTTAATCC
TAGCACTGGGAGAGAGAGAGAGTCAGGCAGATCCTCTGTGAGTTCAAGTGCAGCCTGGTT
TTACATAATGAGTTCCAGGTCAGCTAGAGATAGAGATACATGTATTTCATATATATGAAA
TCAATAATTTTTTGTAGACAGGGTCTTATGTAGCCCAGAATGATCTTAAACTCCCAGTGC
TTCTACCTCCCACGTGCTGTGATTACACCTGTGCACTACCACCCAGCTGCTGAAATCACA
TAATCTAATGGTATTAATATGTAACTAGTTTTTGTTTCCTTAATACAGACAAATTTAACC
CAATTTAAACAGGATTGGAGATACATACAGGTTGTAGGTGATGAGACTACCACCCCTATA
ACCCTGACAAATCTCCAGTAGTTTGTTGGCTTGTTTGAACATCAATATTCGTGCAATATT
TTATGTAAAAAGCCTATGAAAGTCACAGATTTTTTTTTTAATGCCTTTTCAGCCTGCAAA
GGAAATGGCCCCCCACCCCCACCCCGCCCAACTCCCGCTGATGTTTTCCACTTTTCCTGT
GATTAAAAAAATTTTTTCCCTTGGAAACCATTTTCCCTAGTTACTTCTTT
GGCTGATTTTCCACACAAAGAACTGAAAGGCATTTATCCCAAGGGAAGCAGTTCTTTTAGATTTTACTAAGAAGTCAGCTAACACTTTTCAACATTCCCTTCTCTTCTTTGTTTTTAAAGAAAGTTCTGGTTTTGTTTCACTTTCATCGGGAGACTTAAATGACACCAAGCAAAGCTACTTAGTTTAGATTTCCAG
GTAAACATGTTTTAAATTTTAAGTT..........ATAACTTTAAATTTTTTCCTTTTAG
AAGTTCTTGGTGGAAAAAAAAAATCAAGCATGAAGCTAGCAGTGTTGTTTTGTTTCATTCTGCTTATTGTTCTTCAAACTGATTGTGAACGAGGTACTAGGAGGCAAAGGAGAAGGATGCATCAGAGAAGACTCAGGAAAAGCTCTTCATTCCACCTCAGAGCCAACAGGCAGCTTGAAGTTCAGCAAACCACTGCTGCTCCAGATGCTAGACTACCCACTGCCAACTCTGATTACAGTGTGGAAGAAAACATAGAATCGCTTCTAAGTAATCTTGGAGTAGAATCAAGTTACAGTGTTTTACCAG
GTAAGAGAATGTGTGAGGGAGAAAA..........ACAAACAGTCCCTTTTCTCTTCTAG
GAAAGAAAGGATACTGCTTTGTAAAGGGCATGATCATGTACAACAAAGCTGTCTGGTCTCCTGAGCCCTGCACCACTTGCCTCTGCTCAAATGGAAGAGTGCTTTGTGATGAAACCGAGTGCCACCCCAAGGCGTGCCCCTATACCATTAAACCGGAAGGAGAGTGCTGCCCCATCTGCTCTGATGCTG
GTATACAATATAAAACAAAGTATCA..........ACTGAGTTTTCTGGTGATTCTTCAG
AACAAGAATCCATTAACAAACTTCACAAGCAAGTGCCACCTCCTCAGATGGAAATGGACCAAGTAGCCATAAAAGAAGCTCTTCAATCTGAGGAGGATGAAGAGATAGCGGAAGGACACAAGGAGCACAAGAAAGAGACCTCAGTGCCTACTAAGATCCATGGCGATGGGGAAAGAGCTGAGAGAAAACTGAGGCCGGAGAAAGAAGGGAGGTCGGCACGTCAACCACTCTACCATGGAAGAAGGGAGGAAGAGGAGAGCAAGGAGGAGACTGAGAGGGAAGGAGAGGAGGAAGAGGAGGAGGAGGAAGAAGAAGAAGAGGATGCTATAAGAGGAGATGTGTTCAGAATGTCCTCCCGGGTAATTCCTGGAACCCCAAGAGGCAGGCCACGTCTGCCCAGAAGCTGTTCCCTGTCCTACAGGACTATCAGCTGCGTTCATGCAGACTTCACTGAGATCCCACCAATAACAGCACCAGAAGTAACGAACCTGGAGTTGGTTG
GTAAGAGATGACGACTTACTTCATG..........CTAATACAACTACTGTACATCCTAG
GGAATTCGATCATCTCCATTCCGGATGAAGCATTTAATGGATTACCAAATTTGGAAAGACTTGATCTGAGCAGAAATAATATCACTTCTTCGGGCATAGGTCCAAAAGCATTCAAG
GTACATACTTCCATTAGTATGTAGC..........GTAACTTTGAGATTTGTCTTTTAAG
TCTTTGAAGAAGTTAATGCGTCTGAACATGGATGGAAATAATTTGGTACATATTCCTTCAGACTTACCATCTACACTAGAAGAACTTAAAATAAATGACAACAATCTCCAGGCTATCGATGAGAAAAGTTTATCAG
GTATTTTAGTCATGTGGAGTGGGGT..........TATTTGGATTATTTTATTTTTCTAG
ACTTAAATCAACTTGTCACTTTAGAATTGGAAGGAAACAATCTCAGTGAAATCAATGTCGACCCTCTAGCTTTCCAATCTTTGGAAAGTCTATCGTATCTACGTCTGGGAAGAAACAAATTTAGAATCATACCACAAGGTCTTCCTGCTTCTACTGAG
GTACTGATATCTGTCTTCTAGCCTC..........AAAATAATAATTTCTCTGTTTATAG
GAGTTATACCTAGAAAATAATCAAATTGAAGAAATAACTGAAATTTGTTTCAATCATACCAGAAAGATAACTATGATCATTCTACGTTACAATAAAATAGAAGAAAGTCGGATTGCTCCTTTAGCATGGATAAATCAAGA
GTAAGTATCTACCACAATTTAACTT..........GCTGCTCACTTTCTTTTTGTTGCAG
AAATCTTGAATCTATTGACCTGTCCTATAACAAGCTCTACCACGTCCCCTCCTACCTACCCAAATCTCTTCTGCACCTTGTCCTAATTGGGAACCAAATCGATCGGATCCCTGGCTATGTGTTTGGCCACATGCAACCAGGCCTGGAGTACTTGTACCTGTCATTTAACAGACTTTCTGATGATGGTGTGGACCTAGTCTCGTTCTATGGAGCATATCATTCTCTGAGAGAATTATTTCTGGATCACAATGACTTCAAATCTATACCACCTGGAATACAAGACATGAAAGCACTGCATTTTCTGAGGCTGAACAACAATAAGATTCG
GTAAATTTTAGATTTTTCAAGTATC..........AATTTATACGTGTATCTTTCCTTAG
GAATATTCATCCTGAGCAAATCTGCAATGCTGAAGAGGATGAGGACTCAGCTCTCGAGCATCTTCATCTTGAAAACAATTATATTAGAACTAGAGAGATATCATCCTATGCATTTTCATGCATAAGACTGTATTCAAGTATTGTTCTTAAACCACAACACATCAAGTGATTTCAAGCTTCCTTCTGCCATTATTGTTTTTTGTTTGTTTGTTTTCTGAGACAGGGTTTCTCTGTGTAGCTCTGGCTGTCCTGGAACTCACTTTGTAGACCAGACTGGCCTCGAACTCAGAAATCCACCTGTCTTTGCCTCCCAAGTGCTAGGATTAAAGGCGTGCGCCACCACCGCCCGGCACCTTCTGCCATTTATAAATTTTACCGAAGCATTAACAAAATTACGTCTCTTTTATTGTGTGTGTGTGTTTCTGTATGTGTTTGTGCACATGAGTTCTGTGCTCTCAGTAACCAGAAGAAGGTGTTGGTTGCCCTGGAGCTGGAGTTACAAGTGGTTCTGAGCCAGTTGATAAGTGTGCTGTAAAATGAACTTGGGTATGTGGTAAGAGCAGTACATGTTCTTAACTGCTTGATCCATGTCTCCAGTCTCCAAAACACCATTCTAATGCTAATTTCTTGGTTTAAATAATTTTACAGTGGTTACATATACACACTGGTAATGGTAAGGAAAGCTAGCAGAAGGGCATACAAAAATTCTACACTATAAGTCTAGAATTAGTTTTCAAAGTTAAAATAAAGCCATTTCAAGACTGCTTTCATTCTGCAGCAAGATAAAAAAATTAGAAAAAGTAAACTGAGCATGGTGGCACATGCCTTTAACCCCAGCGCTGTGAGACAGAGGCCAAAGGATCTCAGTGAGTATGAGGCCAGCCGGGTCTATATAGTGAGATCCAGGACAGCCTGAACTATGTAAAGACCCTATCTCAAAAAAAGACTACAAAATGTAAGCACTCTTCTAAAAATACAAATTACTGTTAATTATAAGCTGACATAAATGTAAATACAACTCATTCCTACACTAGTTATATAGTTAGCAACCATCTCTTTTGCCAGTTACTAAAATATACTTTTTATCAGTTTAATGAACAAAGTAGCACTCATTACACACTGACTTGTAATGATTTCTTTTAATGTAAACCTGATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTACCTACCTACCTACCTACCTACCTACCTACCTACCTGTCTGTCTATGATCTAGCTATTAAGAGAGACTCTTACTGTATAGCTCTGGCTGGCCTGGCACTTAACCAGGTGCAAGGATTAAAGGCATGTGCAATCTTTGATCTCTGTATTTATACAAAATTTTATATAATACATATAGAAACTCTGTTGATTTCTTTTATTAACTCTTAAATTATTGTTCTGAAGAAATACTAGTGTCATGACTTAAGCTCTAGCTTTGGGATCTACCTTAGTTTCTTTTCCTGTTACTGTGATAAAAATACCTCAATAAAAGCTAACTCAAAG
AAGAAAGGGTTTATTTTGTTGCAAAGATTAGGAGTACAGTCCATCATGAGGCAAGGAAGT
CAAGGGAACAGGAGAATGAAACAGCTGGTCCCATTGTGTTTAAAATCAGGAATTACAGGC
AAAGACTGCTTGTGCTCAGGTCAAAGGGAACTCGGGCTCAGTGAGATGAGCCAATGGAAT
TATTTAATACAACAGTGGAAGCTATTAAATAATTTACTTTGTATCCACACACTCTCTTTT
CAAATGGGGTCTCACTCTGTAGCTCAGGCTGCCTTGGAACTCACAATGGTCCTTCTGAAT
TTCTGCTTCCCAAGGTCAGGATTACAGGTATGCAACACCTGTCACCCTTACGGTGACTTT
CTTCAGCTGCATTATGATGCCACTTCAGAGAGCAAATATCAAACATAACTGAGAAGTTGT
CTCCTTTCCTGTAGGAATGTAAGCAGAAAATCAAGGACCAGGCAAGAGCTGTCAATCAGC
TAATCAGGGTGATGAAAAGAACATACCAGCCCAGGCTTCCCTGGTCAGGGCCTGAGAGTG
CTCTGGAATATGGGCCACAGTCAGCAGCCTGCACAGAAAAGATGGCATATGCAGCAGCAG
ATACAGATAACCCAACTGTGGTAAGGTGCAGAATCCCCTATAAAGCTAAAAATCAGAATG
ACAGTTAGAACTTTGCCCTGAATTTGGAAGATTCATTTATTTCAACTGGTTTTATACTTT
TGTGAACATTTCCAGCATGGAACCTGTTCAGTCTTGAAATTTCATCATGTTCTGAATGGG
ATGCTTTAATTACATAGAAATAGTGATAAATGTCCTTACAGCAAACCCTCCTCTTGATAA
CAAACAGATGTTCAGTCTGGTCTCGTAAATCTGCTGTAATCACTAGCACATATGTGAACT
AAGGAAGTCTTAGAATAAGAATGGTCAAGAAAACATTAATGTCATATCTTGACATTCCAC
ATATGTACAAAGAATGCTATCTGTATTTTTAATTTTGAGA..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........TATTCACAATTTTCTTGTTTCAAAATTTGATATGTAGAGGCAAGTATCAT TCACCACATAAGTCACTTATGATTTATCATCATCTGCAAGTATGTTAAGTCTTTGTCTTT ATTATTACTAAATGTCAAGTCTATGTGTCTTGATAGTAGTTGGTTGTCATCTCACCTGGT TCTTCCACAGAGTAACTCAAGCACCCAGCAGTGCTGGGTGCTTTTCTAACTTTCTTATGG AGAGATAAAGAAACAGGAGGCCAAAGCACACAACTAATTTGCTAGAATAACCAGTAATGA GGAGGCTTGCTGCTCCCTTATACATTAAATGTGCATGCACACACACACACACACACACAC ACACACACACGCACACACAGAGGAAAAAAACCTAGGTGTAATGTTGCATACTTTTAATCC TAGCACTGGGAGAGAGAGAGAGTCAGGCAGATCCTCTGTGAGTTCAAGTGCAGCCTGGTT TTACATAATGAGTTCCAGGTCAGCTAGAGATAGAGATACATGTATTTCATATATATGAAA TCAATAATTTTTTGTAGACAGGGTCTTATGTAGCCCAGAATGATCTTAAACTCCCAGTGC TTCTACCTCCCACGTGCTGTGATTACACCTGTGCACTACCACCCAGCTGCTGAAATCACA TAATCTAATGGTATTAATATGTAACTAGTTTTTGTTTCCTTAATACAGACAAATTTAACC CAATTTAAACAGGATTGGAGATACATACAGGTTGTAGGTGATGAGACTACCACCCCTATA ACCCTGACAAATCTCCAGTAGTTTGTTGGCTTGTTTGAACATCAATATTCGTGCAATATT TTATGTAAAAAGCCTATGAAAGTCACAGATTTTTTTTTTAATGCCTTTTCAGCCTGCAAA GGAAATGGCCCCCCACCCCCACCCCGCCCAACTCCCGCTGATGTTTTCCACTTTTCCTGT GATTAAAAAAATTTTTTCCCTTGGAAACCATTTTCCCTAGTTACTTCTTT
1	EXON 1	49,504,810	49,505,005	-	-	196	GGCTGATTTTCCACACAAAGAACTGAAAGGCATTTATCCCAAGGGAAGCAGTTCTTTTAG ATTTTACTAAGAAGTCAGCTAACACTTTTCAACATTCCCTTCTCTTCTTTGTTTTTAAAG AAAGTTCTGGTTTTGTTTCACTTTCATCGGGAGACTTAAATGACACCAAGCAAAGCTACT TAGTTTAGATTTCCAG
	INTRON 1 - 2	49,505,006	49,514,793			9,788	GTAAACATGTTTTAAATTTTAAGTT..........ATAACTTTAAATTTTTTCCTTTTAG
2	EXON 2	49,514,794	49,515,099	-	1	306	AAGTTCTTGGTGGAAAAAAAAAATCAAGCATGAAGCTAGCAGTGTTGTTTTGTTTCATTC TGCTTATTGTTCTTCAAACTGATTGTGAACGAGGTACTAGGAGGCAAAGGAGAAGGATGC ATCAGAGAAGACTCAGGAAAAGCTCTTCATTCCACCTCAGAGCCAACAGGCAGCTTGAAG TTCAGCAAACCACTGCTGCTCCAGATGCTAGACTACCCACTGCCAACTCTGATTACAGTG TGGAAGAAAACATAGAATCGCTTCTAAGTAATCTTGGAGTAGAATCAAGTTACAGTGTTT TACCAG
	INTRON 2 - 3	49,515,100	49,518,301			3,202	GTAAGAGAATGTGTGAGGGAGAAAA..........ACAAACAGTCCCTTTTCTCTTCTAG
3	EXON 3	49,518,302	49,518,490	1	1	189	GAAAGAAAGGATACTGCTTTGTAAAGGGCATGATCATGTACAACAAAGCTGTCTGGTCTC CTGAGCCCTGCACCACTTGCCTCTGCTCAAATGGAAGAGTGCTTTGTGATGAAACCGAGT GCCACCCCAAGGCGTGCCCCTATACCATTAAACCGGAAGGAGAGTGCTGCCCCATCTGCT CTGATGCTG
	INTRON 3 - 4	49,518,491	49,520,571			2,081	GTATACAATATAAAACAAAGTATCA..........ACTGAGTTTTCTGGTGATTCTTCAG
4	EXON 4	49,520,572	49,521,072	1	1	501	AACAAGAATCCATTAACAAACTTCACAAGCAAGTGCCACCTCCTCAGATGGAAATGGACC AAGTAGCCATAAAAGAAGCTCTTCAATCTGAGGAGGATGAAGAGATAGCGGAAGGACACA AGGAGCACAAGAAAGAGACCTCAGTGCCTACTAAGATCCATGGCGATGGGGAAAGAGCTG AGAGAAAACTGAGGCCGGAGAAAGAAGGGAGGTCGGCACGTCAACCACTCTACCATGGAA GAAGGGAGGAAGAGGAGAGCAAGGAGGAGACTGAGAGGGAAGGAGAGGAGGAAGAGGAGG AGGAGGAAGAAGAAGAAGAGGATGCTATAAGAGGAGATGTGTTCAGAATGTCCTCCCGGG TAATTCCTGGAACCCCAAGAGGCAGGCCACGTCTGCCCAGAAGCTGTTCCCTGTCCTACA GGACTATCAGCTGCGTTCATGCAGACTTCACTGAGATCCCACCAATAACAGCACCAGAAG TAACGAACCTGGAGTTGGTTG
	INTRON 4 - 5	49,521,073	49,522,775			1,703	GTAAGAGATGACGACTTACTTCATG..........CTAATACAACTACTGTACATCCTAG
5	EXON 5	49,522,776	49,522,891	1	0	116	GGAATTCGATCATCTCCATTCCGGATGAAGCATTTAATGGATTACCAAATTTGGAAAGAC TTGATCTGAGCAGAAATAATATCACTTCTTCGGGCATAGGTCCAAAAGCATTCAAG
	INTRON 5 - 6	49,522,892	49,524,322			1,431	GTACATACTTCCATTAGTATGTAGC..........GTAACTTTGAGATTTGTCTTTTAAG
6	EXON 6	49,524,323	49,524,458	0	1	136	TCTTTGAAGAAGTTAATGCGTCTGAACATGGATGGAAATAATTTGGTACATATTCCTTCA GACTTACCATCTACACTAGAAGAACTTAAAATAAATGACAACAATCTCCAGGCTATCGAT GAGAAAAGTTTATCAG
	INTRON 6 - 7	49,524,459	49,527,609			3,151	GTATTTTAGTCATGTGGAGTGGGGT..........TATTTGGATTATTTTATTTTTCTAG
7	EXON 7	49,527,610	49,527,767	1	0	158	ACTTAAATCAACTTGTCACTTTAGAATTGGAAGGAAACAATCTCAGTGAAATCAATGTCG ACCCTCTAGCTTTCCAATCTTTGGAAAGTCTATCGTATCTACGTCTGGGAAGAAACAAAT TTAGAATCATACCACAAGGTCTTCCTGCTTCTACTGAG
	INTRON 7 - 8	49,527,768	49,528,873			1,106	GTACTGATATCTGTCTTCTAGCCTC..........AAAATAATAATTTCTCTGTTTATAG
8	EXON 8	49,528,874	49,529,013	0	2	140	GAGTTATACCTAGAAAATAATCAAATTGAAGAAATAACTGAAATTTGTTTCAATCATACC AGAAAGATAACTATGATCATTCTACGTTACAATAAAATAGAAGAAAGTCGGATTGCTCCT TTAGCATGGATAAATCAAGA
	INTRON 8 - 9	49,529,014	49,530,064			1,051	GTAAGTATCTACCACAATTTAACTT..........GCTGCTCACTTTCTTTTTGTTGCAG
9	EXON 9	49,530,065	49,530,391	2	2	327	AAATCTTGAATCTATTGACCTGTCCTATAACAAGCTCTACCACGTCCCCTCCTACCTACC CAAATCTCTTCTGCACCTTGTCCTAATTGGGAACCAAATCGATCGGATCCCTGGCTATGT GTTTGGCCACATGCAACCAGGCCTGGAGTACTTGTACCTGTCATTTAACAGACTTTCTGA TGATGGTGTGGACCTAGTCTCGTTCTATGGAGCATATCATTCTCTGAGAGAATTATTTCT GGATCACAATGACTTCAAATCTATACCACCTGGAATACAAGACATGAAAGCACTGCATTT TCTGAGGCTGAACAACAATAAGATTCG
	INTRON 9 - 10	49,530,392	49,531,262			871	GTAAATTTTAGATTTTTCAAGTATC..........AATTTATACGTGTATCTTTCCTTAG
10	EXON 10	49,531,263	49,532,789	2	-	1,527	GAATATTCATCCTGAGCAAATCTGCAATGCTGAAGAGGATGAGGACTCAGCTCTCGAGCA TCTTCATCTTGAAAACAATTATATTAGAACTAGAGAGATATCATCCTATGCATTTTCATG CATAAGACTGTATTCAAGTATTGTTCTTAAACCACAACACATCAAGTGATTTCAAGCTTC CTTCTGCCATTATTGTTTTTTGTTTGTTTGTTTTCTGAGACAGGGTTTCTCTGTGTAGCT CTGGCTGTCCTGGAACTCACTTTGTAGACCAGACTGGCCTCGAACTCAGAAATCCACCTG TCTTTGCCTCCCAAGTGCTAGGATTAAAGGCGTGCGCCACCACCGCCCGGCACCTTCTGC CATTTATAAATTTTACCGAAGCATTAACAAAATTACGTCTCTTTTATTGTGTGTGTGTGT TTCTGTATGTGTTTGTGCACATGAGTTCTGTGCTCTCAGTAACCAGAAGAAGGTGTTGGT TGCCCTGGAGCTGGAGTTACAAGTGGTTCTGAGCCAGTTGATAAGTGTGCTGTAAAATGA ACTTGGGTATGTGGTAAGAGCAGTACATGTTCTTAACTGCTTGATCCATGTCTCCAGTCT CCAAAACACCATTCTAATGCTAATTTCTTGGTTTAAATAATTTTACAGTGGTTACATATA CACACTGGTAATGGTAAGGAAAGCTAGCAGAAGGGCATACAAAAATTCTACACTATAAGT CTAGAATTAGTTTTCAAAGTTAAAATAAAGCCATTTCAAGACTGCTTTCATTCTGCAGCA AGATAAAAAAATTAGAAAAAGTAAACTGAGCATGGTGGCACATGCCTTTAACCCCAGCGC TGTGAGACAGAGGCCAAAGGATCTCAGTGAGTATGAGGCCAGCCGGGTCTATATAGTGAG ATCCAGGACAGCCTGAACTATGTAAAGACCCTATCTCAAAAAAAGACTACAAAATGTAAG CACTCTTCTAAAAATACAAATTACTGTTAATTATAAGCTGACATAAATGTAAATACAACT CATTCCTACACTAGTTATATAGTTAGCAACCATCTCTTTTGCCAGTTACTAAAATATACT TTTTATCAGTTTAATGAACAAAGTAGCACTCATTACACACTGACTTGTAATGATTTCTTT TAATGTAAACCTGATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC TATCTACCTACCTACCTACCTACCTACCTACCTACCTACCTGTCTGTCTATGATCTAGCT ATTAAGAGAGACTCTTACTGTATAGCTCTGGCTGGCCTGGCACTTAACCAGGTGCAAGGA TTAAAGGCATGTGCAATCTTTGATCTCTGTATTTATACAAAATTTTATATAATACATATA GAAACTCTGTTGATTTCTTTTATTAACTCTTAAATTATTGTTCTGAAGAAATACTAGTGT CATGACTTAAGCTCTAGCTTTGGGATCTACCTTAGTTTCTTTTCCTGTTACTGTGATAAA AATACCTCAATAAAAGCTAACTCAAAG
	3' upstream sequence						AAGAAAGGGTTTATTTTGTTGCAAAGATTAGGAGTACAGTCCATCATGAGGCAAGGAAGT CAAGGGAACAGGAGAATGAAACAGCTGGTCCCATTGTGTTTAAAATCAGGAATTACAGGC AAAGACTGCTTGTGCTCAGGTCAAAGGGAACTCGGGCTCAGTGAGATGAGCCAATGGAAT TATTTAATACAACAGTGGAAGCTATTAAATAATTTACTTTGTATCCACACACTCTCTTTT CAAATGGGGTCTCACTCTGTAGCTCAGGCTGCCTTGGAACTCACAATGGTCCTTCTGAAT TTCTGCTTCCCAAGGTCAGGATTACAGGTATGCAACACCTGTCACCCTTACGGTGACTTT CTTCAGCTGCATTATGATGCCACTTCAGAGAGCAAATATCAAACATAACTGAGAAGTTGT CTCCTTTCCTGTAGGAATGTAAGCAGAAAATCAAGGACCAGGCAAGAGCTGTCAATCAGC TAATCAGGGTGATGAAAAGAACATACCAGCCCAGGCTTCCCTGGTCAGGGCCTGAGAGTG CTCTGGAATATGGGCCACAGTCAGCAGCCTGCACAGAAAAGATGGCATATGCAGCAGCAG ATACAGATAACCCAACTGTGGTAAGGTGCAGAATCCCCTATAAAGCTAAAAATCAGAATG ACAGTTAGAACTTTGCCCTGAATTTGGAAGATTCATTTATTTCAACTGGTTTTATACTTT TGTGAACATTTCCAGCATGGAACCTGTTCAGTCTTGAAATTTCATCATGTTCTGAATGGG ATGCTTTAATTACATAGAAATAGTGATAAATGTCCTTACAGCAAACCCTCCTCTTGATAA CAAACAGATGTTCAGTCTGGTCTCGTAAATCTGCTGTAATCACTAGCACATATGTGAACT AAGGAAGTCTTAGAATAAGAATGGTCAAGAAAACATTAATGTCATATCTTGACATTCCAC ATATGTACAAAGAATGCTATCTGTATTTTTAATTTTGAGA..........

Sequence Detail Report

Gene Symbol (Gene ID)	Ecm2 (ENSMUSG00000043631)
Transcript ID	ENSMUST00000051504

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 671 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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