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Target CDS Information

Gene Symbol (Gene ID) Col9a1 (ENSMUSG00000026147)
Cross Reference
CCDS CCDS35527.1
EMBL AC129325, AC153653, CH466536
GO GO:0001894, GO:0003417, GO:0005594, ...show all
goslim_goa GO:0005575, GO:0008150, GO:0040007, ...show all
MGI_trans_name Col9a1-001
OTTP OTTMUSP00000026168
OTTT OTTMUST00000054775
protein_id EDL14410.1
Reactome R-MMU-1266738, R-MMU-1442490, R-MMU-1474228, ...show all
RefSeq_mRNA NM_007740.3
RefSeq_peptide NP_031766
UCSC uc007amo.2
UniParc UPI000154944D
Uniprot/SPTREMBL G3X995
Vega_transcript Col9a1-001, OTTMUST00000054775
Vega_translation 178849, OTTMUSP00000026168
Definition protein_id:ENSMUSP00000051579
translation:
MKNFWKISVFFCVCSCLGPWVSATLKRRARFPANSISNGGSELCPKIRIGQDDLPGFDLI
SQFQIEKAASRRTIQRVVGSTALQVAYKLGSNVDFRIPTRHLYPSGLPEEYSFLTTFRMT
GSTLEKHWNIWQIQDSAGREQVGVKINGQTKSVAFSYKGLDGSLQTAAFLNLPSLFDSRW
HKLMIGVERTSATLFIDCIRIESLPIKPRGQIDADGFAVLGKLVDNPQVSVPFELQWMLI
HCDPLRPRRETCHELPIRITTSQTTDERGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGP
PGPPGPPGDPGKPGAPGKPGTPGADGLTGPDGSPGSVGPRGQKGEPGVPGSRGFPGRGIP
GPPGPPGTTGLPGELGRVGPIGDPGKRGPPGPPGPPGPSGTIGFHDGDPLCPNSCPPGRS
GYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGDQGPPGPQGLRGITGIVGDK
GEKGARGFDGEPGPQGIPGAAGDQGQRGPPGETGPEGDRGIQGSRGIPGSPGPKGDTGLP
GVDGRDGIPGMPGTKGEAGKPGPPGDVGLQGLPGVPGIPGAKGVAGEKGNTGAPGKPGQL
GSSGKPGQQGPPGEVGPRGPRGLPGSRGPVGPEGSPGIPGKLGSVGSPGLPGLPGPPGLP
GMKGDRGVFGEPGPKGEQGASGEEGEAGARGDLGDMGQPGPKGSVGNPGEPGLRGPEGIR
GLPGVEGPRGPPGPRGMQGDQGATGLPGIQGPPGRAPTDQHIKQVCMRVVQEHFAEMAAS
LKRPDTGASGLPGRPGPPGPPGPPGENGFPGQMGIRGLPGIKGPPGALGLRGPKGDLGEK
GERGPPGRGPKGLPGAIGLPGDPGPASYGKNGRDGEQGPPGVAGIPGVPGPPGPPGPPGF
CEPASCTLQSGQRAFSKGPDK

Chromosome 1
Length
Position(start - end)
74,005
24,177,855 - 24,251,861
Orient to Chromosome plus
Link Location : (1:24177855-24251861)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Col9a1 (ENSMUSG00000026147)
Transcript ID ENSMUST00000054588
Reports
substitution
cSNPs14
Insertion51
Deletion58
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num8
non-synonymous num6
synonymous substitutions 24178328 (p.Arg28Arg), 24195531 (p.Thr265Thr), 24197458 (p.Asp309Asp), 24220752 (p.Arg486Arg), 24224551 (p.Gly604Gly), 24231459 (p.Phe669Phe), 24239280 (p.Gly796Gly), 24251858 (p.Lys921Lys),
non-synonymous substitutions 24214579 (p.Asp461Ala), 24221621 (p.Glu516Lys), 24224511 (p.Thr591Met), 24237221 (p.Met737Val), 24237232 (p.Asp740Glu), 24251734 (p.Pro880Leu),
B6 transcript
(ENSMUST00000054588)
MKNFWKISVFFCVCSCLGPWVSATLKRRARFPANSISNGGSELCPKIRIGQDDLPGFDLI
SQFQIEKAASRRTIQRVVGSTALQVAYKLGSNVDFRIPTRHLYPSGLPEEYSFLTTFRMT
GSTLEKHWNIWQIQDSAGREQVGVKINGQTKSVAFSYKGLDGSLQTAAFLNLPSLFDSRW
HKLMIGVERTSATLFIDCIRIESLPIKPRGQIDADGFAVLGKLVDNPQVSVPFELQWMLI
HCDPLRPRRETCHELPIRITTSQTTDERGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGP
PGPPGPPGDPGKPGAPGKPGTPGADGLTGPDGSPGSVGPRGQKGEPGVPGSRGFPGRGIP
GPPGPPGTTGLPGELGRVGPIGDPGKRGPPGPPGPPGPSGTIGFHDGDPLCPNSCPPGRS
GYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGDQGPPGPQGLRGITGIVGDK
GEKGARGFDGEPGPQGIPGAAGDQGQRGPPGETGPEGDRGIQGSRGIPGSPGPKGDTGLP
GVDGRDGIPGMPGTKGEAGKPGPPGDVGLQGLPGVPGIPGAKGVAGEKGNTGAPGKPGQL
GSSGKPGQQGPPGEVGPRGPRGLPGSRGPVGPEGSPGIPGKLGSVGSPGLPGLPGPPGLP
GMKGDRGVFGEPGPKGEQGASGEEGEAGARGDLGDMGQPGPKGSVGNPGEPGLRGPEGIR
GLPGVEGPRGPPGPRGMQGDQGATGLPGIQGPPGRAPTDQHIKQVCMRVVQEHFAEMAAS
LKRPDTGASGLPGRPGPPGPPGPPGENGFPGQMGIRGLPGIKGPPGALGLRGPKGDLGEK
GERGPPGRGPKGLPGAIGLPGDPGPASYGKNGRDGEQGPPGVAGIPGVPGPPGPPGPPGF
CEPASCTLQSGQRAFSKGPDK*
MSMv4 transcript
MKNFWKISVFFCVCSCLGPWVSATLKRRARFPANSISNGGSELCPKIRIGQDDLPGFDLI
SQFQIEKAASRRTIQRVVGSTALQVAYKLGSNVDFRIPTRHLYPSGLPEEYSFLTTFRMT
GSTLEKHWNIWQIQDSAGREQVGVKINGQTKSVAFSYKGLDGSLQTAAFLNLPSLFDSRW
HKLMIGVERTSATLFIDCIRIESLPIKPRGQIDADGFAVLGKLVDNPQVSVPFELQWMLI
HCDPLRPRRETCHELPIRITTSQTTDERGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGP
PGPPGPPGDPGKPGAPGKPGTPGADGLTGPDGSPGSVGPRGQKGEPGVPGSRGFPGRGIP
GPPGPPGTTGLPGELGRVGPIGDPGKRGPPGPPGPPGPSGTIGFHDGDPLCPNSCPPGRS
GYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGAQGPPGPQGLRGITGIVGDK
GEKGARGFDGEPGPQGIPGAAGDQGQRGPPGETGPKGDRGIQGSRGIPGSPGPKGDTGLP
GVDGRDGIPGMPGTKGEAGKPGPPGDVGLQGLPGVPGIPGAKGVAGEKGNMGAPGKPGQL
GSSGKPGQQGPPGEVGPRGPRGLPGSRGPVGPEGSPGIPGKLGSVGSPGLPGLPGPPGLP
GMKGDRGVFGEPGPKGEQGASGEEGEAGARGDLGDMGQPGPKGSVGNPGEPGLRGPEGIR
GLPGVEGPRGPPGPRGVQGEQGATGLPGIQGPPGRAPTDQHIKQVCMRVVQEHFAEMAAS
LKRPDTGASGLPGRPGPPGPPGPPGENGFPGQMGIRGLPGIKGPPGALGLRGPKGDLGEK
GERGPPGRGPKGLPGAIGLPGDPGPASYGKNGRDGEQGPLGVAGIPGVPGPPGPPGPPGF
CEPASCTLQSGQRAFSKGPDK*
homology99.35 (922 / 922)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Col9a1 (ENSMUSG00000026147)
Transcript ID ENSMUST00000054588
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TACAGAGATGATTGGCCCCCCTGATTCTGCGTTCCTCCGACATTTGTATC
CTCCAAGATGGAACCGGAAGTCAGGCATCCTTTGCTTGCCGTACAGGGCCAGGAGTCCTG
TTGCTCCTGAGGAGTGCTCAGGTTCAGGAGGAGGTCTGTGCACAAGAAACAGTGGCGTGT
GCACACCTCCTGTCTAGGCCTGTGATGCTAGTAATTCACTCTCTGGTTTCTTATGGGCAA
GATTGTGTTGTGTTCTCCCCGGTCTATTCAAACGCATACTATTAATCTCAGAGATTGAGA
GCAAACAATTAAAAGACTTGAGGTCATATCGTATCAGAATTTCCCATGGCGAGTTAGAGA
GCTGACTTGCAATGAATAGCATCAATGGTGCTCTGGGAGAGTCACCCTCTCATCTAGAGA
ATAACGATGTGTAGTCTAACTTCACGAGTGGTTGTGAGACTCATATGCTACTAAGCTGTA
GGCATGGACAAGAGAGGGACACACACAATGACTTGTTATCAGGATAAGGTTGCCAGCGGA
TGAGTTTGGCATGAGATTTTTTATCTTTGCCAATCTCATTTGATTTCCCTCAGGAACTGC
TGTTAAGGAACAACTTTGGTCCCATTTTACAGATAAGGTAGTTAACTACTGGAAGGCTAA
TTATATTGCTCAAGTTCACATAACTGCTAAAGCAGAAGTGGGTTTAAACTTAAGTCGACT
AAGCGGCAAGGCTCCGGTGAGCCCCCACATTTCTGCCACGGAATAGGCAGCTCTTTGCTG
GATCCTGGACCACTAAAAGCCTCTACTGTGCCCTTATAACAGCTTTCAAAGCCTCTACTG
TGCCCTATAGCTGTTCTAAAAGCCTGCACTGTATTCCTATAGCAGCTTGCTGCATTTCTC
TGGTTAAATCCCCCACATCCTGGTTTTTTCTTCTTTTTTTTCTTCTCAGTAAGGCTTTTC
CCATTCAGTCCCTCCTTCAGTGTGACCTTGTTAGTTTTGAGCCAGGCACA
1 EXON 1 24,177,610 24,177,868 - 2 259
CCCCTGGCTGGGCCTGGGTTACAGGCTGCCTCTCCCCACCCCTTTCCTTTGCTTCAGCTT
AAAGGGTTATTGCATGCCTCCAATTCACTCTTTTTGCTTTTAGCCCTGAGAGGGGCAAGA
AGGAGCAAGCTTGGGGCCAAAACTCGAAGTCCGAGAAGGGTAGAGAGGGGGTCTTAGGGA
GTAGTGACCCCCCCTCCAAACCCTTTACGGTGACTCTTATAAACCACAGAGAACCCACTG
GGAAAATGAAGAACTTCTG
INTRON 1 - 2 24,177,869 24,178,258 390
GTAAGCCCATGCCTCTGGAGGGAGC..........GGTCATTTCTCTCTCTTTTCTTCAG
2 EXON 2 24,178,259 24,178,332 2 1 74
GAAAATCTCAGTTTTCTTCTGTGTGTGCAGTTGTCTGGGACCCTGGGTATCCGCAACTCT
TAAGCGTCGCGCAA
INTRON 2 - 3 24,178,333 24,179,283 951
GTAAGAGCCATGGTTTATGGGGTGA..........GGATGAGACAGTATTGCTTTTGCAG
3 EXON 3 24,179,284 24,179,361 1 1 78
GATTTCCTGCCAATTCCATTTCTAATGGTGGAAGTGAACTGTGTCCCAAGATCAGGATTG
GCCAAGATGACTTACCAG
INTRON 3 - 4 24,179,362 24,179,474 113
GCAAGTAGCACTGTATCATACTGGA..........TTCCTTTCTCTTTCCCTTTCTGTAG
4 EXON 4 24,179,475 24,179,607 1 2 133
GGTTTGACCTGATTTCTCAGTTCCAAATTGAGAAGGCTGCATCTCGAAGGACTATCCAGA
GGGTGGTGGGATCCACAGCCTTACAAGTGGCTTACAAGCTGGGAAGTAATGTAGACTTCA
GGATTCCAACAAG
INTRON 4 - 5 24,179,608 24,185,037 5,430
GTAACCTTTCAGAAAGACTCTAATT..........TTTATTATTTTCAAACTCTTCTCAG
5 EXON 5 24,185,038 24,185,434 2 0 397
GCATTTGTATCCCAGTGGACTGCCTGAAGAATATTCCTTTTTAACTACTTTCCGGATGAC
TGGAAGCACACTTGAAAAGCACTGGAACATTTGGCAGATCCAGGATTCCGCAGGGAGAGA
GCAAGTTGGCGTGAAGATAAATGGCCAAACAAAGTCTGTCGCATTTTCATACAAGGGACT
GGATGGGAGTCTCCAAACGGCTGCCTTCTTGAATTTGCCGTCCTTGTTTGACTCCCGGTG
GCATAAGCTCATGATTGGCGTGGAAAGAACAAGCGCCACTCTTTTTATTGACTGCATCAG
GATCGAATCTTTACCTATAAAGCCAAGAGGCCAGATTGATGCGGATGGCTTTGCAGTGCT
GGGAAAACTTGTGGACAATCCTCAGGTTTCTGTTCCT
INTRON 5 - 6 24,185,435 24,194,682 9,248
GTAAGTATAAAATCACAAGGTATCA..........AACCTGCTCTCTTGCTTTTCCCCAG
6 EXON 6 24,194,683 24,194,766 0 0 84
TTTGAACTCCAGTGGATGCTGATTCATTGTGACCCCCTGAGACCCAGGAGAGAAACCTGT
CATGAGCTGCCAATCAGAATCACA
INTRON 6 - 7 24,194,767 24,195,516 750
GTGAGTCCTCGAACCGACTTTCTCC..........TCTTTCCATCTTTTTCTGTCCGCAG
7 EXON 7 24,195,517 24,195,537 0 0 21
ACCAGCCAGACCACCGATGAG
INTRON 7 - 8 24,195,538 24,196,890 1,353
GTAAGCTGGGAGAAAACCCGAAAAC..........AACCTCTGTGTGTTGTTTTTGGCAG
8 EXON 8 24,196,891 24,196,965 0 0 75
AGAGGTCCTCCGGGTGAGCAGGGGCCTCCAGGGCCTCCTGGGCCTCCTGGAGTTCCGGGC
ATAGATGGCATTGAT
INTRON 8 - 9 24,196,966 24,197,299 334
GTAAGTTTCTATGTCCCTTGTTCTC..........TATATCCCTGTCTCTATGTCTCCAG
9 EXON 9 24,197,300 24,197,335 0 0 36
GGTGACCGAGGTCCAAAGGGTCCCCCAGGACCTCCG
INTRON 9 - 10 24,197,336 24,197,443 108
GTAAGTTGATTGGCATGATGGTGCA..........GCTTCATTTTCTCTCCATTGCTCAG
10 EXON 10 24,197,444 24,197,506 0 0 63
GGTCCTCCTGGAGATCCAGGCAAGCCAGGAGCACCAGGCAAGCCAGGCACACCAGGAGCT
GAT
INTRON 10 - 11 24,197,507 24,202,013 4,507
GTGAGTATGTGTGTGTGTGTGTGTG..........TGACACTATTTTCTTGCTTCATTAG
11 EXON 11 24,202,014 24,202,067 0 0 54
GGATTAACAGGACCTGATGGATCCCCTGGCTCTGTTGGACCAAGGGGACAAAAA
INTRON 11 - 12 24,202,068 24,202,296 229
GTAAGTTAGCCACCTGGTCTTACCT..........TTTTTATTTCTTTCTTTACTTTTAG
12 EXON 12 24,202,297 24,202,332 0 0 36
GGAGAACCTGGTGTACCTGGGTCTCGTGGATTTCCA
INTRON 12 - 13 24,202,333 24,204,657 2,325
GTAAGTATTTTAAGCAGTAAAGCAA..........AACCATTTTTATTTTGATATTTTAG
13 EXON 13 24,204,658 24,204,681 0 0 24
GGCCGTGGTATTCCAGGACCCCCT
INTRON 13 - 14 24,204,682 24,205,053 372
GTAAGTATTGTTTCATTGTTTATTT..........TGTCCCTTTGATTTGTTGATTTCAG
14 EXON 14 24,205,054 24,205,107 0 0 54
GGTCCTCCTGGGACCACAGGACTTCCTGGAGAACTTGGCCGAGTAGGCCCTATT
INTRON 14 - 15 24,205,108 24,207,385 2,278
GTGAGTACCCTGGTACACTTTGACT..........GTGTCTCTACTTTGAAATGACCTAG
15 EXON 15 24,207,386 24,207,439 0 0 54
GGAGACCCTGGGAAAAGAGGACCACCTGGCCCTCCTGGACCTCCAGGACCCAGT
INTRON 15 - 16 24,207,440 24,208,173 734
GTAAGTAATTTTCAGTTTAAATTTT..........TCATCTATTTTATTCTTAATTTTAG
16 EXON 16 24,208,174 24,208,206 0 0 33
GGAACAATTGGATTTCATGATGGAGACCCATTG
INTRON 16 - 17 24,208,207 24,209,058 852
GTAAGATTTTTCTTATGAATACAAT..........CTCTCTTCTTCCTTCTCTCTTTCAG
17 EXON 17 24,209,059 24,209,115 0 0 57
TGCCCCAATTCCTGCCCACCAGGTCGCTCTGGATATCCAGGCCTACCAGGCATGAGG
INTRON 17 - 18 24,209,116 24,210,372 1,257
GTAAGAATAATTTTGTTATTCTGTC..........TTGTATCTATTTTCATATTTGTTAG
18 EXON 18 24,210,373 24,210,426 0 0 54
GGCCATAAAGGGGCGAAAGGAGAAATCGGCGAGCCAGGAAGACAAGGACACAAG
INTRON 18 - 19 24,210,427 24,214,538 4,112
GTAAGGAAAGGGCATTTAGTAGGTC..........ATCCTCTTTTTTTTTTCCATTTTAG
19 EXON 19 24,214,539 24,214,592 0 0 54
GGTGAAGAGGGTGACCAGGGGGAACTGGGAGAAGTTGGCGCTCAAGGACCTCCA
INTRON 19 - 20 24,214,593 24,217,535 2,943
GTAAAGTATTTTTTTTTATTGTTTA..........GCCCCCACCCCTTTCACTTTTCCAG
20 EXON 20 24,217,536 24,217,589 0 0 54
GGACCTCAGGGTCTGAGAGGCATCACTGGCATAGTTGGAGACAAAGGAGAAAAG
INTRON 20 - 21 24,217,590 24,220,743 3,154
GTAAGATATCTATGATAAAGTCATA..........TTTTATTTCTTTGTTTTGTTTTCAG
21 EXON 21 24,220,744 24,220,797 0 0 54
GGTGCTCGAGGATTTGATGGAGAGCCTGGACCTCAGGGCATTCCAGGTGCAGCT
INTRON 21 - 22 24,220,798 24,221,578 781
GTAAGTAGTTTTTCTTTTACAAACA..........ATTGGGAACTTCTGCGTTCATACAG
22 EXON 22 24,221,579 24,221,632 0 0 54
GGTGATCAAGGACAGCGAGGCCCTCCAGGAGAAACAGGTCCTAAGGGAGACAGA
INTRON 22 - 23 24,221,633 24,221,769 137
GTGAGTACAAAATTAGTTTGAATCC..........TTCTTTTATCTCTTCTGCCCTACAG
23 EXON 23 24,221,770 24,221,823 0 0 54
GGCATTCAAGGTTCCCGAGGAATTCCTGGATCCCCAGGGCCAAAAGGAGACACG
INTRON 23 - 24 24,221,824 24,221,944 121
GTATGTCCCGAGCTGTGGGTGTCAC..........AGTGTGCTCTTTGTGTGTCTTATAG
24 EXON 24 24,221,945 24,221,998 0 0 54
GGCTTGCCAGGTGTAGATGGCCGAGATGGAATACCAGGAATGCCCGGGACAAAG
INTRON 24 - 25 24,221,999 24,222,421 423
GTAGATGTGTGGACTGGGTTTGCCT..........TGTGTGATAATGAACTTGCTTTCAG
25 EXON 25 24,222,422 24,222,475 0 0 54
GGTGAAGCAGGGAAGCCTGGACCCCCCGGGGACGTGGGATTGCAGGGCTTACCA
INTRON 25 - 26 24,222,476 24,223,574 1,099
GTATGTGCTAATATTTTGTTTCTTA..........TCAGAATCTGTGTGTGTTCCTTTAG
26 EXON 26 24,223,575 24,223,619 0 0 45
GGTGTCCCTGGAATCCCTGGTGCAAAAGGTGTTGCCGGTGAAAAG
INTRON 26 - 27 24,223,620 24,224,503 884
GTAAAAACCAAATTGAGCTTGCAGC..........TCTAAATGTTGTCTTTTGTCTTTAG
27 EXON 27 24,224,504 24,224,557 0 0 54
GGTAACATGGGTGCTCCAGGAAAGCCCGGTCAGTTGGGAAGTTCAGGAAAACCA
INTRON 27 - 28 24,224,558 24,224,646 89
GTAAGACTATGTTTATGCTTTTCTG..........TGTATCTCTGCTTTCCTTTCCACAG
28 EXON 28 24,224,647 24,224,700 0 0 54
GGCCAACAAGGGCCCCCAGGAGAGGTTGGACCTCGGGGACCCAGGGGCCTTCCA
INTRON 28 - 29 24,224,701 24,230,195 5,495
GTGAGTACTCTTCTCCCATGCCTTC..........GATGACAACATATATGTTTTCACAG
29 EXON 29 24,230,196 24,230,249 0 0 54
GGCAGTAGAGGCCCGGTAGGACCAGAAGGGTCTCCAGGCATACCAGGGAAACTG
INTRON 29 - 30 24,230,250 24,230,882 633
GTAAGTGAAGTTTCCACTCTATATG..........TGAAGATTTTCTGTTTGTTTTCCAG
30 EXON 30 24,230,883 24,230,954 0 0 72
GGATCTGTTGGCAGCCCTGGCCTTCCTGGCTTGCCTGGGCCCCCTGGACTTCCTGGAATG
AAAGGAGACAGG
INTRON 30 - 31 24,230,955 24,231,450 496
GTAAGCTATCCAGAGGTCTACGTGG..........AAATGTCAAATTTTATTTACTCCAG
31 EXON 31 24,231,451 24,231,486 0 0 36
GGTGTATTCGGTGAACCGGGTCCCAAGGGTGAACAG
INTRON 31 - 32 24,231,487 24,232,184 698
GTAAGTGTTGAGTGTTGTTAGCGGA..........GTGACATTTTATCTTAAAATTTTAG
32 EXON 32 24,232,185 24,232,229 0 0 45
GGTGCCTCTGGTGAAGAAGGTGAAGCAGGAGCAAGGGGTGACCTT
INTRON 32 - 33 24,232,230 24,233,570 1,341
GTAAGACATTTTTAAAAAATTGGTT..........ATATAATTTTGTCTTACTGATTTAG
33 EXON 33 24,233,571 24,233,603 0 0 33
GGAGATATGGGACAACCTGGCCCAAAGGGATCT
INTRON 33 - 34 24,233,604 24,237,124 3,521
GTAAGTATGATGAACAGTAATATTA..........TTTTATAGTATACTGTTTGTTCTAG
34 EXON 34 24,237,125 24,237,271 0 0 147
GTGGGTAACCCCGGGGAGCCGGGTCTGAGGGGGCCTGAAGGAATCAGAGGGCTTCCTGGA
GTGGAAGGACCAAGAGGACCACCTGGACCCCGGGGCGTGCAGGGAGAACAGGGTGCCACT
GGGCTGCCTGGTATCCAGGGCCCTCCG
INTRON 34 - 35 24,237,272 24,237,441 170
GTGAGTGGGCAGATACATCCCATGG..........CCTGCCTTTTTCTTTCTCATCCCAG
35 EXON 35 24,237,442 24,237,496 0 1 55
GGCAGAGCGCCGACCGACCAGCACATCAAGCAGGTTTGCATGAGAGTCGTGCAAG
INTRON 35 - 36 24,237,497 24,239,206 1,710
GTAAATAAATTGCAGCGGGTTGAAC..........TGTTTGTTTGTTTATTGTCTTGCAG
36 EXON 36 24,239,207 24,239,395 1 1 189
AGCATTTTGCGGAAATGGCAGCCAGCCTCAAGAGACCAGACACAGGAGCCTCTGGTCTTC
CTGGGAGGCCTGGTCCCCCTGGGCCTCCGGGCCCCCCTGGAGAGAATGGTTTCCCTGGTC
AGATGGGAATCCGTGGTCTCCCAGGCATTAAGGGTCCCCCTGGTGCTCTTGGCTTAAGAG
GACCTAAAG
INTRON 36 - 37 24,239,396 24,244,357 4,962
GTAAGATTTCTTTTTAAGTTTTATT..........GTAACATTTGTTTATTGTAATGCAG
37 EXON 37 24,244,358 24,244,435 1 1 78
GAGACTTGGGAGAAAAAGGAGAACGTGGTCCTCCAGGAAGAGGTCCTAAGGGTTTGCCTG
GAGCGATAGGTCTCCCAG
INTRON 37 - 38 24,244,436 24,251,676 7,241
GTAAGTGGGTTCTGCTGTAGAATGG..........TGTGTGGGCTTTTTATCTGTTTCAG
38 EXON 38 24,251,677 24,252,684 1 - 1,008
GTGACCCAGGCCCTGCCAGCTATGGGAAAAATGGCCGTGACGGAGAGCAAGGTCCCCTGG
GAGTGGCAGGAATTCCTGGTGTGCCTGGACCCCCAGGTCCTCCAGGCCCTCCTGGGTTCT
GTGAGCCAGCCTCTTGCACCCTGCAGTCTGGTCAAAGAGCATTTAGCAAAGGGCCGGACA
AATGAAATCCGTAGCGTTGTAGGCTCCCTACACAAAGCACACCTGTTAGCAGAGTGTGGG
GGGAGAAACGATACCAACACTGGGGCAAAGCCTCAAAGGTTTCACCTCTGACATCATTAC
ACAAGTGCTACTTGACAATCAGATTTAGAGCAACTGGTGCTATTCAGTAAGTCTTGTTCC
TTGTCCATGGAAGGAAGGTAGGAGAGTCATCAGACAAGAGACAAATTCAATTTCTCTTTA
GCCAAATTTATAAATCCTCTTCCCAGGAGTCTGAATTTTAGTGTGCTATGAATGGATATA
TGATGTGTTGTGGGTCACTGTGCCAACAACAACAACAACAACAAGCTGTTCACATTACCT
CAGTTGCTGTCATTATTTTTATTTCAATTAAGATATTGATCTCAGATTATTCATTCAGTT
ATATCAAGTATTGCTAGGATACTAAGGAACAGACCCCACTACATTCAATAAAATTGGTGC
TTAAAATCTTCATCAGGGCTGTGTCCCAAAAGTGGTCTCTATACATCGCATGGTGGTTTT
GATATTTACTATGAATTTGTGAATAGTGTGTACTGCATCCAATCCCATTTGTATTCTAAA
ATCCACGTGAAAGCAAAGAAGTAATACCCTGACACACATATGTTTTGTGGCTGACATTAT
TTATTTTAAAAGTTTGAGGTAACATGTCTGATTGTATCAAAGAAAAAATAAACACGGTTT
CCTAGTCTTTTGTGTGTTCTAAAATAAGTAGTCATGTTAAATGTGGTTACATGTTAATTG
AACTGGTTTAGAGTCATTAAAATTTTGACTTACTGCTACTTCTTAAAA
3' upstream sequence
TGTATTTATTTTACTGGTTTATTCTATCTGAAGAAATCTGAAGAGTTCCCACTGGTCCAT
GGAGTTATTCTATGACTGTGTATGTGTGAATGTGCATGTGTGTGTGTATTGAGAGACTTA
ATGGATTTCTTTGAAATTCTAATGAAGACTATGAACCCGTTTTCCACGGGCAAACACACA
AGTGCATGTGCATGTGCACTTTGTACACTATTTCAGAGAGTCCTTGGAGTGCCGTAAACC
TGGTTTTTCTTGGTCTCTAGATTAGGAACCACACTTTCATTTCAGAGGATGTAGTGCCTC
CTTGCAACCTCACGGATGCAGAAATAACCTACCTCTCACCATTTTCAAAAAAAAATTTAC
GAAACAGTTCTTTAAAAAAATGTAGATAGTTTAGAGTTACATTATGGTAGTTAAGAACAT
GTGTATATTAGTTAAATCATGACAATACACATTTCCATTTCTTCAATTATTATTCTATGT
GTTCAGAACTATGTAGTTTAACTATTTTGAAATTCATCAGAGCTGGCTTCCAGTATAGAG
GGTAGCCAGTAGTTGTCATCATCTGTCAAAGAGGGGCTGTTGGCAATCCCTCCAGTCTGG
GCTTTGTGCCCCTGTATTACACTTCCTAGTCTGTCTCCTGTTCCCCACACCCTGACTCTC
TAGTGACCGCTGTTCCTTTCTTTGTTGATCCTTCACCAAAGGGCACGTATGTTGTTTCAT
AGTGCTGAAATAGACATGGAACATTTATACACACACACACACACACACACACACACACAC
ACACACATGCACGCGCGCGCGCACACACATATATATGTTTAAAATTTTTTGAGTCTCCGC
AATGTTTTTCATAATGACTTTTAGGGAACTTTTCTTCTCTCTAATACTTGCTAGTGTTTG
CTATTTTTGTCTTTTATGATAGCCATCAAAGTGGAGTTGGATTGTCACTCGTTTTCACAT
TCCCTAGCAATGGCTGGCATTGCAGTTTTGTTTTCATGCC..........

Sequence Detail Report

Gene Symbol (Gene ID) Col9a1 (ENSMUSG00000026147)
Transcript ID ENSMUST00000054588
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 922 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information