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Target CDS Information

Gene Symbol (Gene ID) Gm6563 (ENSMUSG00000051255)
Cross Reference
EMBL AK003453, AK018773, AK088266, ...show all
Fantom 1110005A23, 1500016M05, E430008O03, ...show all
GO GO:0000346, GO:0003677, GO:0003723, ...show all
goslim_goa GO:0003674, GO:0003677, GO:0003723, ...show all
MGI_trans_name Gm6563-201
protein_id AAH27510.1, AAI57910.1, AAI58024.1, ...show all
UniParc UPI00000011CF
Uniprot/SPTREMBL B2RXM7
Uniprot/SWISSPROT Q9D1J3
Definition protein_id:ENSMUSP00000137244
translation:
MAAETVELHKLKLAELKQECLARGLETKGIKQDLINRLQAYLEDHAEEEANEEDVLGDET
EEEEPKPIELPVKEEEPPEKAVDMASEKKVVKITSGIPQTERMQKRAERFNVPVSLESKK
AARAARFGISSVPTKGLSSDTKPMVNLDKLKERAQRFGLNVSSISRKSEDDEKLKKRKER
FGIVTSSAGTGTTEDTEAKKRKRAERFGIA

Chromosome 19
Length
Position(start - end)
631
23,675,848 - 23,676,480
Orient to Chromosome plus
Link Location : (19:23675848-23676480)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Gm6563 (ENSMUSG00000051255)
Transcript ID ENSMUST00000056396
Reports
substitution
cSNPs0
Insertion9
Deletion7
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num0
synonymous substitutions
non-synonymous substitutions
B6 transcript
(ENSMUST00000056396)
MAAETVELHKLKLAELKQECLARGLETKGIKQDLINRLQAYLEDHAEEEANEEDVLGDET
EEEEPKPIELPVKEEEPPEKAVDMASEKKVVKITSGIPQTERMQKRAERFNVPVSLESKK
AARAARFGISSVPTKGLSSDTKPMVNLDKLKERAQRFGLNVSSISRKSEDDEKLKKRKER
FGIVTSSAGTGTTEDTEAKKRKRAERFGIA*
MSMv4 transcript
MAAETVELHKLKLAELKQECLARGLETKGIKQDLINRLQAYLEDHAEEEANEEDVLGDET
EEEEPKPIELPVKEEEPPEKAVDMASEKKVVKITSGIPQTERMQKRAERFNVPVSLESKK
AARAARFGISSVPTKGLSSDTKPMVNLDKLKERAQRFGLNVSSISRKSEDDEKLKKRKER
FGIVTSSAGTGTTEDTEAKKRKRAERFGIA*
homology100.00 (211 / 211)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Gm6563 (ENSMUSG00000051255)
Transcript ID ENSMUST00000056396
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GCTTGCTACATTGAAGTCTGTGCCAGATGTTAAGAGAGAGAGAAAAAAAA
AAACTCAGATCAAATGTTCATTCATCTCACTCTCTAATAAAGCTTGAGAGTGTGGGTATG
AGAATAAGCATATACGTGCATTTATTAATATACACATATGTGTGTGTGTGGCCAAAGTAA
AGTATAAAGTGACGGGGACAACCCTGAAGGACAAGTAAATTTCAACAAAATGCATGAACC
TGTTCAGTATCTACTGGCAACCTTTTAGAAAAAAAAAATCAACTGACAACATGCGGACTT
TGGGCTCCTTGTGATCAGGGTTCTGGCTAAGTTCCTAGGGGACTTCCTGTCTGTTTGCTT
ATTACATTTACACTTCGTATCGGCTGTCTTATGCTCACCAGTTATTCCTCATCGCTTCTT
CCATCTAGTCATGCATCCTCTTACGCACTGATTGAAGAAGTACTCTACACGCAGGGCAAG
GAATGGAGAACATAGCATCGCAGAGCCTAACGGGATTCTGACTTTTGTGTTTACATTCTC
TAGGGCAAAGATATAGAACAGCAATGGACAGCTACATAGTTCTATTCATCAGATATACAA
ATGCTTATGTGTGTGTAATGAGGGCATTTGGTCCTTCATTCCTATGAGGGGTTGTATTTT
GTTTGCAGGAAATACATGTGCCTTATCACATGTGTCACAGAGGGTGGGAGGTGGGGCATC
CAGAGCCTTGCCAAGGCACACCTCTGTAGTTTCACTAAAAGGAAGGGTGAGTTGCTTCAT
TTTATAGATGCTATCACTCTAGGCGAGCCTGTTTGGATCCTGGATGTAGTATTCTCTCAA
TGAATCCTTTGAGTTGCTGATTGAATACCCATCGTTCTGAATGGCTTCCAGAGCAGTTGG
AGACTCTGAAACAAATGTAAACCTCCATGCAAGCTGATCTGGACCATGTGACTCAGCATG
CCAAATGGTACTTGAAACAGCGGATCAGGGTCCGGTGGACTGAGGCGCAT
1 EXON 1 23,675,844 23,676,712 - - 869
CAAGATGGCGGCCGAGACGGTGGAGCTCCACAAGCTGAAGCTTGCTGAACTAAAGCAAGA
ATGTCTTGCTCGTGGTTTAGAGACCAAGGGAATAAAACAAGATCTTATAAATAGGCTGCA
GGCCTATCTTGAAGACCATGCAGAAGAAGAAGCAAATGAAGAAGATGTACTGGGAGATGA
AACTGAGGAAGAAGAACCAAAGCCCATAGAACTGCCTGTTAAAGAGGAAGAACCTCCTGA
AAAGGCTGTTGATATGGCATCGGAAAAGAAGGTGGTAAAGATTACATCTGGAATACCTCA
GACTGAAAGAATGCAGAAGAGGGCTGAACGATTCAATGTACCTGTAAGCCTGGAGAGTAA
GAAGGCTGCCCGGGCGGCTAGGTTTGGAATTTCTTCAGTTCCAACAAAAGGTTTATCATC
TGACACCAAGCCTATGGTTAACCTGGATAAACTAAAGGAAAGAGCACAGAGATTTGGTTT
GAATGTCTCTTCCATCTCTAGAAAGTCTGAGGATGATGAGAAGCTGAAGAAACGGAAGGA
GAGATTTGGGATTGTGACAAGTTCAGCTGGAACTGGAACCACAGAGGATACAGAGGCAAA
GAAAAGAAAAAGAGCAGAGCGTTTTGGAATTGCATAATGAAAAGTTCGTGCTTTCTGCAC
CATAGTGTTTTCCATTTCTCAAATTTTTCTTGGTTTTATATATACATACACACCCCTACC
TACGTATCTATCTACATACACAGTCATGTGCCTCACAGTGAGGAAGCATGTACGTTTGGT
ACATCCTTGAATTCAGTAGCAGTTTTATTTAACTGCTCTTCTGCGTTTAAGATTGTTGTG
GTTTTTGTTTTTAATTATTTTTGCTTATT
3' upstream sequence
AATAAAAAAGGAAGAAAAGAAAAAAAAAGAAAGAAAGAAACAGCGGATCAGAATGCTCAC
ACAGTAGCAAATAAAAATGTTACAATGCCCTCAGGTGTTTGGAGAAGTCAGTCTTCTGTT
GCTAAGTGTTACTTTTGGGGGAGAGTTCAGTCCTTGGGACTGAAGATATGAGACATCAAA
TGATCGTGTGACCTAAGATGCTTCTTTGGCTCACATTGCTACAGTGTTGTAAGCCGGGTA
CACAAGACCAGTTTCATTCGTCTCCGAAGACAGAAATGGCATGTGTAAGTGACTCAGACA
TCCTTACCACTTACCTGTGCTGCAGTGACATGCCTTTCCCTGAGCTATGCCCTAGAGCAG
CATGGAGAATCCCCCTCCCCAAGACACTTGACTGAGCATGTCTAGTTTCCAAGTAGTTTT
TCATACTCTGATGGTACTGCGTTTTAGCATTTTAGCCTACTTGTGGTCTTAAAGAACCAA
GTCAAAAGGGGATTCTCCATGTGAACATCAGATTGGGTGTCTAAGTTGTCCACTCAGATT
GGAAGAAAGCATGACCAGAAGAGTGATCTAAGTGGTTCTGCGGACAGCAGCAAATACTTT
GGTAGCTGTATGAAAAATTATATAGGAATTAGTAAAATTTAGGAATTGATAATCTGAGGA
GAAGAAGAATGTCATGGTTTGAATGAGAATGGTCCCCACAGGCTCATATTTTTTAACACT
TGGCTCCCAGTTAGTGGAACTGTTTGGGAAGGATTAGCAGGGGTGGCCTTGTGGGAGGAG
TTATGTCAATAAGATGGGCCCTGAAGTTTCAGAAAATGCTTGCCACAGTCTCTCCTTCTC
TCTTTCTCTCTCTCCCTCTCTGCCTTGTGCTTATGGATCCAAATGTAAGCTTTCAGCTGC
TCTTTCAGCACCACAATGACTGCCCACTACCATGCTCCCTGCAAGGATATTCAACGACTC
TAAACCTCTGAGACTGTAGGATAAACTCTTTCTTCTACAA..........

Sequence Detail Report

Gene Symbol (Gene ID) Gm6563 (ENSMUSG00000051255)
Transcript ID ENSMUST00000056396
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 211 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information