top page

Tutorials are available here.

Target CDS Information

Gene Symbol (Gene ID) Npas2 (ENSMUSG00000026077)
Cross Reference
CCDS CCDS48244.1
EMBL AC132571, AC142106, CH466536
GO GO:0003677, GO:0003677, GO:0003700, ...show all
goslim_goa GO:0001071, GO:0003674, GO:0003677, ...show all
MGI_trans_name Npas2-001
OTTP OTTMUSP00000052908
OTTT OTTMUST00000094905
protein_id EDL14555.1
RefSeq_mRNA NM_008719.2
RefSeq_peptide NP_032745
RefSeq_peptide_predicted XP_011236754.1
UCSC uc007atd.2
UniParc UPI000058AE75
Uniprot/SPTREMBL G3X9B7
Vega_transcript Npas2-001, OTTMUST00000094905
Vega_translation 179087, OTTMUSP00000052908
Definition protein_id:ENSMUSP00000054719
translation:
MDEDEKDRAKRASRNKSEKKRRDQFNVLIKELSSMLPGNTRKMDKTTVLEKVIGFLQKHN
EVSAQTEICDIQQDWKPSFLSNEEFTQLMLEALDGFVIVVTTDGSIIYVSDSITPLLGHL
PADVMDQNLLNFLPEQEHSEVYKILSSHMLVTDSPSPEFLKSDNDLEFYCHLLRGSLNPK
EFPTYEYIKFVGNFRSYNNVPSPSCNGFDNTLSRPCHVPLGKDVCFIATVRLATPQFLKE
MCVADEPLEEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHIDDLELLARCH
QHLMQFGKGKSCCYRFLTKGQQWIWLQTHYYITYHQWNSKPEFIVCTHSVVSYADVRVER
RQELALEDPPTEAMHPSAVKEKDSSLEPPQPFNALDMGASGLPSSPSPSASSRSSHKSSH
TAMSEPTSTPTKLMAENSTTALPRPATLPQELPVQGLSQAATMPTALHSSASCDLTKQLL
LQSLPQTGLQSPPAPVTQFSAQFSMFQTIKDQLEQRTRILQANIRWQQEELHKIQEQLCL
VQDSNVQMFLQQPAVSLSFSSTQRPAAQQQLQQRPAAPSQPQLVVNTPLQGQITSTQVTN
QHLLRESNVISAQGPKPMRSSQLLPASGRSLSSLPSQFSSTASVLPPGLSLTTIAPTPQD
DSQCQPSPDFGHDRQLRLLLSQPIQPMMPGSCDARQPSEVSRTGRQVKYAQSQVMFPSPD
SHPTNSSASTPVLLMGQAVLHPSFPASRPSPLQPAQAQQQPPPYLQAPTSLHSEQPDSLL
LSTFSQQPGTLGYAATQSTPPQPPRPSRRVSRLSES

Chromosome 1
Length
Position(start - end)
98,662
39,263,344 - 39,362,007
Orient to Chromosome plus
Link Location : (1:39263344-39362007)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Npas2 (ENSMUSG00000026077)
Transcript ID ENSMUST00000056815
Reports
substitution
cSNPs20
Insertion112
Deletion140
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num14
non-synonymous num6
synonymous substitutions 39292736 (p.Pro77Pro), 39292773 (p.Leu90Leu), 39326127 (p.Leu280Leu), 39328335 (p.Cys312Cys), 39328446 (p.Ser349Ser), 39333827 (p.Leu386Leu), 39333851 (p.Ala394Ala), 39334782 (p.Val454Val), 39336045 (p.Leu481Leu), 39345328 (p.Ala567Ala), 39345355 (p.Ala576Ala), 39359709 (p.Ala728Ala), 39359718 (p.Pro731Pro), 39361884 (p.Pro776Pro),
non-synonymous substitutions 39335998 (p.Ala466Pro), 39336005 (p.His468Arg), 39336044 (p.Leu481Pro), 39345311 (p.Thr562Ala), 39359699 (p.Asn725Ser), 39361958 (p.Pro801Gln),
B6 transcript
(ENSMUST00000056815)
MDEDEKDRAKRASRNKSEKKRRDQFNVLIKELSSMLPGNTRKMDKTTVLEKVIGFLQKHN
EVSAQTEICDIQQDWKPSFLSNEEFTQLMLEALDGFVIVVTTDGSIIYVSDSITPLLGHL
PADVMDQNLLNFLPEQEHSEVYKILSSHMLVTDSPSPEFLKSDNDLEFYCHLLRGSLNPK
EFPTYEYIKFVGNFRSYNNVPSPSCNGFDNTLSRPCHVPLGKDVCFIATVRLATPQFLKE
MCVADEPLEEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHIDDLELLARCH
QHLMQFGKGKSCCYRFLTKGQQWIWLQTHYYITYHQWNSKPEFIVCTHSVVSYADVRVER
RQELALEDPPTEAMHPSAVKEKDSSLEPPQPFNALDMGASGLPSSPSPSASSRSSHKSSH
TAMSEPTSTPTKLMAENSTTALPRPATLPQELPVQGLSQAATMPTALHSSASCDLTKQLL
LQSLPQTGLQSPPAPVTQFSAQFSMFQTIKDQLEQRTRILQANIRWQQEELHKIQEQLCL
VQDSNVQMFLQQPAVSLSFSSTQRPAAQQQLQQRPAAPSQPQLVVNTPLQGQITSTQVTN
QHLLRESNVISAQGPKPMRSSQLLPASGRSLSSLPSQFSSTASVLPPGLSLTTIAPTPQD
DSQCQPSPDFGHDRQLRLLLSQPIQPMMPGSCDARQPSEVSRTGRQVKYAQSQVMFPSPD
SHPTNSSASTPVLLMGQAVLHPSFPASRPSPLQPAQAQQQPPPYLQAPTSLHSEQPDSLL
LSTFSQQPGTLGYAATQSTPPQPPRPSRRVSRLSES*
MSMv4 transcript
MDEDEKDRAKRASRNKSEKKRRDQFNVLIKELSSMLPGNTRKMDKTTVLEKVIGFLQKHN
EVSAQTEICDIQQDWKPSFLSNEEFTQLMLEALDGFVIVVTTDGSIIYVSDSITPLLGHL
PADVMDQNLLNFLPEQEHSEVYKILSSHMLVTDSPSPEFLKSDNDLEFYCHLLRGSLNPK
EFPTYEYIKFVGNFRSYNNVPSPSCNGFDNTLSRPCHVPLGKDVCFIATVRLATPQFLKE
MCVADEPLEEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHIDDLELLARCH
QHLMQFGKGKSCCYRFLTKGQQWIWLQTHYYITYHQWNSKPEFIVCTHSVVSYADVRVER
RQELALEDPPTEAMHPSAVKEKDSSLEPPQPFNALDMGASGLPSSPSPSASSRSSHKSSH
TAMSEPTSTPTKLMAENSTTALPRPATLPQELPVQGLSQAATMPTPLRSSASCDLTKQLL
PQSLPQTGLQSPPAPVTQFSAQFSMFQTIKDQLEQRTRILQANIRWQQEELHKIQEQLCL
VQDSNVQMFLQQPAVSLSFSSAQRPAAQQQLQQRPAAPSQPQLVVNTPLQGQITSTQVTN
QHLLRESNVISAQGPKPMRSSQLLPASGRSLSSLPSQFSSTASVLPPGLSLTTIAPTPQD
DSQCQPSPDFGHDRQLRLLLSQPIQPMMPGSCDARQPSEVSRTGRQVKYAQSQVMFPSPD
SHPTSSSASTPVLLMGQAVLHPSFPASRPSPLQPAQAQQQPPPYLQAPTSLHSEQPDSLL
LSTFSQQPGTLGYAATQSTPQQPPRPSRRVSRLSES*
homology99.27 (817 / 817)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Npas2 (ENSMUSG00000026077)
Transcript ID ENSMUST00000056815
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........CAAGACAATCACATTCTAGCAAACACCCCCACCCCGTGACAGCACAGTGG
CAGTGGGCACTGAGATGATTCCCATTTACCCGGGGCACGGATTCTTTGCTACCCCCCTAG
TGACAACTTTAGCAGGACCCTGGCCGGCAGCTCCTCAAATGTCAAGCTCGCCTCCCCTCT
TCCAGGTTCCGTACTAAGCACAGTCTCCCCCTTCCACCGCGCCCAGTCCGGACCAGACTG
GCCGGACCCCCACGTCGATACCCCCACACCCCCCTCCCCAAGCAGCCCCGCAGGACTCGC
AGAGGCCCTGGGGGCGCACCGGTGTCTGCCCCGCCGAGAGTCGCCGGGGGGTCGCAGGGT
CCGCGTCCCTGCGGCACGCGCTGAGTGCGCGGCTCACACTGGGTTTGGACCGTAGGGGGG
TGGGGGGAGCGGGTAGCCGCCGGAGCCTGGAGGCTTAAGAGGAAGAGGAGGAGGAGGAGG
AGGAAGGAGAGCGGGAGGAGGAGGAGAAAGAGAAGAGGGAGGAGGAGGAGGCGGCAGCGG
GGCGGGGAGGTGGCGGCGGTCCCCAGCTCTACGCGCCCAAGAGTTTGCGGCGCGAGCGGC
GGGCTTTTCCGCAGGACCCGAGGGACCCGCGCAGCGGCCGCGGAGCCCCGAGACCCCGGC
GGCAGCGGCGAGAGCAGCGCCTCCCGCCGCCGCCCGGGAGAAGCTCCCCGAGCCCGCCTG
CCGCCCCGGCTCCCCGCGGCGGCGGGAGGCGCGTCTCCCCGGCCCAGTCGGTGCCCGGCC
TGGCGGGGCCGCCCCGGCCCGCTCGGAGGTAAGAGGCCACCGCGCTTGGGGACGCACGAT
CTCGGGTGGGAATACGTGCGCGTGGCTCGCGGCTCTGGTCACCTGCTCGCTAGCGCTGGG
GACGCGCGGGGCAGGGAGGGACGCTCGGGCGCGACACCGCGCGAGGCTGCGCAGCGCAGG
CACCCGGGGGTTGGGGCGCGGGGAGGTGAGTCCTGCGCACTCCGGGTCCT
1 EXON 1 39,194,212 39,194,742 - - 531
GTCGCCCTGGGCTTCGGGTCCTGCCAACCGCTGCAGCCAGACAGACGGTGGGCTCCCGGA
GCTGCTCGCCAAGAGAGAGGACTAGGCACCCCAAACATCGGGATTCGGGGGTCCTCCGAG
GGTGCTAGAGGGGTACTGCGTGCCCGGACAGAAGCTTTCAAGATTGCCCGCTGCCCTTCC
AGAGCCCCACCGCAGGCATCCCGAAGCGTAGGGAGCCCGGGACGCCTGGAGAGTGTGGTT
GCCTGGCCGGGCCCTTGTGTCACTACGTTCCTGGGTCTGACTTGGCTTAGGGCCGGACTG
AAAGCCCAGTCTTTGTGCTTAGACAGCTCTGCGCTCCTGGGACTCCCCGGGTTGGATGCT
ACAACATTGTTTTAGTGGGAGGTGTGCCCCCTCCCCAAGTAGAGGAGGGGTGCGACCTTG
ACTTTTCTAAAAAGCCACTTAGGGTGGGAAGCAGGGGGCAGGGACAGGTACCAAGAGGCT
CAATTCAAAGCCAGCCTCCCCCCTCTGCCCGCCTCTCCTTAACTGCTTAAG
INTRON 1 - 2 39,194,743 39,263,318 68,576
GTAAGAAAGTTTGTTTTCGGCTCTG..........AGATTCCTTTTTCTGTTTTATTTAG
2 EXON 2 39,263,319 39,263,375 - 2 57
CAGGCAAGACTGCATAGAAACTCTAATGGACGAAGATGAGAAGGATAGAGCAAAGAG
INTRON 2 - 3 39,263,376 39,287,467 24,092
GTGAGTGAAGACTGCCCCTGCCTCA..........TAACCTGTGCCTTGTGTGTTCCCAG
3 EXON 3 39,287,468 39,287,616 2 1 149
AGCCTCTCGAAATAAGTCTGAGAAGAAGCGTCGGGACCAGTTCAATGTTCTCATCAAAGA
GCTCAGCTCCATGCTCCCTGGTAACACTCGGAAAATGGACAAAACCACCGTGCTGGAGAA
GGTCATCGGATTCTTGCAGAAACACAATG
INTRON 3 - 4 39,287,617 39,292,686 5,070
GTAAAGGCCGTGTGCGCGTGCTTCT..........TGTTTCTCGTTTGTTTGTTTTTTAG
4 EXON 4 39,292,687 39,292,778 1 0 92
AAGTCTCAGCACAAACAGAAATCTGTGACATCCAGCAGGACTGGAAGCCTTCATTCCTCA
GTAACGAAGAATTCACCCAGCTGATGCTGGAG
INTRON 4 - 5 39,292,779 39,300,643 7,865
GTAAGGTGCACTTCTTCAAGTTAGA..........GCTCTCAAATGTTGCATTTCCCCAG
5 EXON 5 39,300,644 39,300,733 0 0 90
GCATTAGATGGCTTCGTCATCGTCGTGACAACAGACGGCAGCATCATCTATGTGTCCGAC
AGTATCACACCTCTCCTTGGACATTTACCG
INTRON 5 - 6 39,300,734 39,311,840 11,107
GTGAGTTTCTGCTCCAGCGGCCTTG..........TTTTTCTCTTTATTTTCTCTTGCAG
6 EXON 6 39,311,841 39,311,961 0 1 121
GCGGATGTCATGGATCAGAACTTGTTAAATTTCCTTCCAGAGCAAGAACATTCCGAAGTT
TATAAAATCCTTTCTTCCCATATGCTTGTGACGGATTCCCCCTCCCCAGAATTCCTAAAA
T
INTRON 6 - 7 39,311,962 39,312,954 993
GTAAGTCCTCCCTCCTGGTGTTGTT..........CTCTTTTCTCCCTCTAACGACCCAG
7 EXON 7 39,312,955 39,313,068 1 1 114
CTGACAACGATTTAGAGTTTTATTGCCATCTTCTCAGAGGCAGCTTGAACCCAAAGGAAT
TTCCAACTTACGAATATATAAAATTTGTAGGAAATTTTCGCTCTTACAACAATG
INTRON 7 - 8 39,313,069 39,324,439 11,371
GTAAGCTTTAATCGTCCTATTCTTT..........ACTCGTGTGTCTTTCTCCATCTCAG
8 EXON 8 39,324,440 39,324,558 1 0 119
TGCCTAGCCCCTCCTGTAATGGCTTTGACAACACCCTTTCAAGACCCTGCCATGTACCCC
TAGGAAAGGACGTCTGCTTCATCGCCACCGTGCGCCTGGCAACCCCGCAGTTCTTAAAG
INTRON 8 - 9 39,324,559 39,325,295 737
GCAAGTCCCTGACAGTGATGTCATG..........TCTTCTTCTTCCTTTTCCAACACAG
9 EXON 9 39,325,296 39,325,378 0 2 83
GAAATGTGTGTAGCTGACGAACCTTTAGAGGAATTCACTTCGAGGCATAGCTTGGAATGG
AAATTTTTATTTCTGGATCACAG
INTRON 9 - 10 39,325,379 39,326,087 709
GTTTGTGAGGAGAAGAAAAACATAT..........AAGAGTTCCCCATGTCTCCCTGCAG
10 EXON 10 39,326,088 39,326,194 2 1 107
AGCTCCTCCAATCATAGGATACCTGCCCTTTGAAGTACTCGGCACCTCAGGCTACGACTA
CTACCACATTGATGACCTGGAGCTCCTGGCCAGGTGCCACCAGCATC
INTRON 10 - 11 39,326,195 39,328,306 2,112
GTGAGTACCGTACACTCACCTGCCG..........CAGAGTCTGCTGTTTTTCCTCCTAG
11 EXON 11 39,328,307 39,328,454 1 2 148
TGATGCAGTTTGGCAAAGGGAAGTCGTGTTGTTACCGGTTTCTAACCAAAGGGCAGCAGT
GGATTTGGTTGCAAACCCACTACTACATCACCTACCACCAATGGAACTCCAAGCCTGAGT
TCATCGTATGCACACACTCGGTGGTCAG
INTRON 11 - 12 39,328,455 39,330,936 2,482
GTACTGAGTAGCCTGGGCCTCTGGG..........ACAATGGTTTCTCTTTTCTGAGCAG
12 EXON 12 39,330,937 39,331,021 2 0 85
TTACGCAGATGTTCGAGTGGAAAGGAGACAGGAGCTGGCTCTGGAAGACCCACCCACAGA
GGCCATGCACCCCTCTGCAGTGAAG
INTRON 12 - 13 39,331,022 39,333,809 2,788
GTGAGTTCATCCCTGCTAGAGGGAA..........TCATATGCACATGTGTGTGTTTCAG
13 EXON 13 39,333,810 39,333,951 0 1 142
GAAAAGGACTCAAGCCTGGAGCCTCCACAGCCCTTTAATGCCCTTGACATGGGCGCCTCA
GGTCTTCCCAGCAGCCCTTCTCCATCAGCCTCCTCAAGGAGTTCCCACAAGTCCTCACAC
ACAGCCATGTCAGAACCCACCT
INTRON 13 - 14 39,333,952 39,334,702 751
GTGAGTACCATTCCATGGACGGGTA..........AAAACCATCTCTCCTTTCCTTACAG
14 EXON 14 39,334,703 39,334,812 1 0 110
CCACTCCAACCAAGCTGATGGCTGAGAACAGCACCACAGCTTTGCCAAGACCGGCCACCC
TACCCCAGGAGTTACCAGTACAGGGGCTCAGCCAGGCAGCCACAATGCCG
INTRON 14 - 15 39,334,813 39,335,994 1,182
GTGTGTGGGGGACCCCATCTTCTCA..........TCCTATTCTCTCCTCCCCTCCCCAG
15 EXON 15 39,335,995 39,336,096 0 0 102
ACTCCTCTGCGTTCCTCAGCCTCCTGCGACCTCACAAAGCAACTCCTGCCACAGAGCCTG
CCTCAGACCGGCTTGCAGAGTCCACCTGCTCCAGTGACACAG
INTRON 15 - 16 39,336,097 39,338,052 1,956
GTGAGTCAGAGACAGGACAGAGAAG..........AATTTTTTTTTACTTCCTTTTGAAG
16 EXON 16 39,338,053 39,338,199 0 0 147
TTTTCAGCACAATTCAGCATGTTCCAGACCATTAAAGACCAACTGGAGCAGAGGACACGG
ATCCTGCAGGCCAACATTCGGTGGCAGCAGGAAGAGCTTCATAAGATCCAGGAACAACTC
TGCCTGGTCCAGGACTCCAACGTCCAG
INTRON 16 - 17 39,338,200 39,345,268 7,069
GTAATGTGCCTGTGCAGACTGGCCT..........ACAGGCATTTCTCTTCTGTCCTTAG
17 EXON 17 39,345,269 39,345,466 0 0 198
ATGTTTCTGCAGCAGCCAGCTGTGTCCCTGAGCTTCAGCAGTGCGCAGCGACCAGCAGCA
CAGCAGCAGCTGCAGCAAAGGCCCGCTGCACCGTCTCAGCCCCAGCTTGTGGTCAACACT
CCACTGCAGGGGCAGATCACATCCACCCAAGTCACAAACCAGCACCTGCTCCGAGAATCG
AATGTGATATCCGCCCAG
INTRON 17 - 18 39,345,467 39,347,490 2,024
GTACTGTACCCACTTCCGCTTCCTG..........TCTCTCATGTTAAATGATATTCCAG
18 EXON 18 39,347,491 39,347,681 0 2 191
GGTCCAAAGCCAATGAGAAGTTCCCAGCTGCTGCCTGCCAGCGGCCGTTCACTGAGCAGC
CTGCCATCCCAGTTTAGCAGTACAGCTTCCGTGCTCCCGCCTGGCCTGAGCCTCACCACG
ATTGCTCCCACCCCTCAGGATGACAGCCAGTGCCAGCCCAGCCCTGACTTCGGCCATGAT
CGGCAGCTCAG
INTRON 18 - 19 39,347,682 39,348,431 750
GTATGACACTAGGCTGTTGAAAAGA..........CTCTCTCTCTCTCTCTCTCTCAAAG
19 EXON 19 39,348,432 39,348,524 2 2 93
GCTGTTGCTGAGCCAGCCCATCCAGCCTATGATGCCTGGGTCCTGCGATGCCAGGCAGCC
CTCAGAAGTCAGCAGAACTGGACGGCAAGTCAA
INTRON 19 - 20 39,348,525 39,359,648 11,124
GTAGGTGGGAATGGGGCAGACACCT..........ATCTGTTTTATTTGAAACTAAACAG
20 EXON 20 39,359,649 39,359,823 2 0 175
GTATGCACAGAGCCAAGTGATGTTTCCAAGTCCAGACTCACACCCTACCAGCAGCAGCGC
CTCCACCCCAGTCCTGCTCATGGGGCAGGCAGTACTCCATCCCAGCTTCCCTGCTTCCCG
GCCATCGCCACTGCAGCCAGCACAGGCACAGCAGCAGCCACCACCCTATTTGCAG
INTRON 20 - 21 39,359,824 39,361,854 2,031
GTAGGTGAGCTCCGGGAGTTGGGGG..........CTTTTCTGCTCTTTCCTGCGTACAG
21 EXON 21 39,361,855 39,363,236 0 - 1,382
GCACCAACATCTCTGCACAGTGAGCAGCCAGACTCGCTCCTTCTCTCCACCTTCTCCCAG
CAGCCGGGAACCCTGGGCTATGCAGCCACACAGTCTACACCTCAGCAACCCCCACGCCCC
TCCCGCAGGGTCAGCCGGCTGTCAGAGTCCTAAGGTCTCCAACAGCCATCAGGGTAATAC
CCTGACACTGGAGTCCAGACGCAACCAGCTTTAACCAATGGAAAACGGGGTTGGCCGTGG
GAGATGGGATGAAGCGTTTACGTGACTTTGGCGCACCCTGTATACATTTCAGAACTCCTG
ATGGTAACGTGTCTGGAGTGTGGCACTGGCAGAATGGGGAAAGAACAGGAATATTGGCCA
TGATTCTTTTGCCCTGGGCTTCTTGGGCATCCGCTACAGCCATACCAGACAGGAACCAAG
TGTCCCCGTGTTGGCACTGCTTCCTGGTCTATTTGCAGAGGTGGTACCCCTTGCTGCCTC
CAGGAGAGAGCGTTCCAGGTACTCTACAGACTGAGACAGGTCCCAAGCCCTAACAGGCCT
TCACTCTCTTGATAGTCTTTCCTTTACAGTCAAGGACTACGTTAAAGGTCTCTGGAGAGA
GTATAAAGAGATTATTTTTCATCGTTTTTAAAAGGTTTTGTTTTAATTTGCACACCTGTG
CACAAGGGAAATAACTTAGGCACTTTCGGAGTTTGTGTTTGTTTTGTTTTGTTTAATAAG
GTCCCATGGCTTCTTTGGGAATCCACGATAAGAAAAACAACCCCACCAATCAGATAGCGG
AGCCTGTTATTTGAAGCTGCAGAGCCACACCCTTGGCCTAACCCCTAGCGGACTGAGGCT
CTCCCATGCCTACCAGGGGGTGTTTTCCTTCCTAAACAGAACACTGGATTCTTCCTGTTA
ACTTCACCGAGAGTAGCTACAAAGGTGGACTCAGAGCCAAGCACAATCTCACAACGATTC
CAGAATTCCCTAGAGACCTCTTGGGGGGCAACGGGCAGGCTGCATCTCCCAGGAAACCAG
GCAAGGGCCCGCCATCCTAGTGAGGCAGGCCACCGCACCTTTCCACTTCTCTTCCCCATG
ATTCCGAAGATTGGATTTTCCTTTTCAGGATGCACTTTGCTTTTTTTTTTTTTTTTTTTG
TATGTTTTGTTATGTCGAGGTGTTTCTAAAGAGAAGATTTTATGTAATTATAAGAGGAAG
TGTAGTGAATTGTACAGCTGTTGTAATAATGACCTATTTCTATAAAAAAATAAAATTGTA
CGGATTATGTGTAAATTATTTTGTATCTGAGATACCAGTTCCATTCCCACATATGAAAGT
ATAAAGGTTTCCTTGTGTTTTTCTGTGAGTGAACATTTTGTAATAAATTAACAAGTTTGT
AC
3' upstream sequence
AATTTCCTTGGTCCCTTGTTGTACATCGACACATATATCTCTTTTCTGGGAAACCTTAAC
ATTTTTTGAGCTGTTGAAAACTTCAGAGGTAAAGTCCTTAGTCTGTTTTCCGTTGCTGTG
ATAAAGTAAGTGCGGCGGAGAAGTCAGAGAAACGGGCTCAGAGTTTCAGAGAGTTCACAT
GGTCACGTGGCACTGTTGCTCTGGGCCTGTGGTTGCCTCCAACGTCATCGAATGAGTTCA
TGGCAGAAAAGGTCTGCTCATTTCAGGACTATCAGGAAGCAAAGAAAGAGTAAGGGGCAG
GGATGCCAATAAAGGAATACCACTAACAGCCTAACTTTGTTCCAGCAGCCCCACATGCTA
TCAGGCTATACCCAGTAGCTGAGGTCCAGGGTTTCAGCACATGGGTCTTTGGGGGCCGTG
CAAGACCCAAACTTCAGTATGGCAGAAGCTCAAACAATAACTGGAATACTGGAATGGAAA
GCTTGTTTGTTTGTTTGTTTTCTTTTTTCCGAGACAGGGTTTCACTGTATAGCCCTGGCT
GTCCTGGAACTCACTCTGTGGACCAGACTGGCCTTGAACTCAGAAATTCGCCTGCCTCTG
ACTCCCCCGTGCTGGTACTAAAGGCGTGCACCAGAGAAACCCTGTCTCGAAAAACCGGAG
GGGGGGGGTGGTGGGGGGAGGCGTGCGCCACCACTGCTCGACAAATGGAATTTTTTGAAC
TGCATTATTCTGCCAGTTCCCTAAGGCTTAAAGCTTGTGACAGAAAAGCAATGCTTTGTT
GAAGAAATGATGACAAAATAATAACAGGAAAAAGTTGCTGGGAGCATCTCAATCTTGTAG
ACATAGGTAGCCTGCAGAAATGATGGAGACGCTCCCCACCAAAGCATCCATTCATTGTTT
GCAATTGCTTTCAATCAGGACAGATCCGAAGGACTCCCACTACCAGCATGAAGACCAATG
ATACCAGCAAGGTAGGTGTGCCTGTGTGTGATATGTGCAC..........

Sequence Detail Report

Gene Symbol (Gene ID) Npas2 (ENSMUSG00000026077)
Transcript ID ENSMUST00000056815
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 817 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information